mRNA_H-elongata_contig5126.12383.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5126.12383.1
Unique NamemRNA_H-elongata_contig5126.12383.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig5126.12383.1 vs. uniprot
Match: A0A6H5K0Y1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0Y1_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 4.200e-39
Identity = 74/108 (68.52%), Postives = 83/108 (76.85%), Query Frame = 1 
Query:   22 ESKSKHWAKQIVGPPGANLFVYYLPRFLSDAGLAKAFAPFGKVLSAKVYYDRDTGDSKGFGESNARLYVFLSFVSYADPDHADDAIARMNGFLIGQKRLKVVRKRGQE 345
            E + + WAKQ VGP GANLFVYYLP  L+DA LA AFAPFG+VLSAKVYYDRDTG+SKGFG           FVSY+ PD A+ AI+ MNGF IGQKRLKVVRKRGQ+
Sbjct:  316 EERGRRWAKQSVGPTGANLFVYYLPGSLTDADLATAFAPFGEVLSAKVYYDRDTGESKGFG-----------FVSYSKPDEAEAAISSMNGFFIGQKRLKVVRKRGQQ 412
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BLAST of mRNA_H-elongata_contig5126.12383.1 vs. uniprot
Match: D7FV61_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV61_ECTSI)

HSP 1 Score: 129 bits (323), Expect = 2.140e-33
Identity = 65/99 (65.66%), Postives = 73/99 (73.74%), Query Frame = 1 
Query:   22 ESKSKHWAKQIVGPPGANLFVYYLPRFLSDAGLAKAFAPFGKVLSAKVYYDRDTGDSKGFGESNARLYVFLSFVSYADPDHADDAIARMNGFLIGQKRL 318
            E + + WAKQ VGP GANLFVYYLP  L+DA LA AFAPFG+VLSAKVYYDRDTG+SKGFG           FVSY+ PD A+ AI+ MNGF IGQK L
Sbjct:  313 EERGRRWAKQSVGPTGANLFVYYLPGSLTDADLATAFAPFGEVLSAKVYYDRDTGESKGFG-----------FVSYSKPDEAEAAISSMNGFFIGQKFL 400
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BLAST of mRNA_H-elongata_contig5126.12383.1 vs. uniprot
Match: A0A8K1CEG0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CEG0_PYTOL)

HSP 1 Score: 120 bits (302), Expect = 6.720e-30
Identity = 66/115 (57.39%), Postives = 76/115 (66.09%), Query Frame = 1 
Query:    4 LSIVDAESKSKHWAKQIVGPPGANLFVYYLPRFLSDAGLAKAFAPFGKVLSAKVYYDRDTGDSKGFGESNARLYVFLSFVSYADPDHADDAIARMNGFLIGQKRLKVVRKRGQER 348
            LS V+A +K+     Q+ GP GANLF+Y+LP  L+DA LA AFAPFG V+SAKVY D+ TG+SKGFG           FVSY  PD AD AIA MNGF IG KRLKV  KR   R
Sbjct:  333 LSGVEAAAKASRTTSQLEGPSGANLFIYHLPHDLTDADLATAFAPFGTVISAKVYMDKITGESKGFG-----------FVSYDSPDAADAAIASMNGFQIGSKRLKVQHKRVHHR 436
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BLAST of mRNA_H-elongata_contig5126.12383.1 vs. uniprot
Match: K3WWH8_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WWH8_GLOUD)

HSP 1 Score: 117 bits (294), Expect = 1.040e-28
Identity = 65/115 (56.52%), Postives = 75/115 (65.22%), Query Frame = 1 
Query:    4 LSIVDAESKSKHWAKQIVGPPGANLFVYYLPRFLSDAGLAKAFAPFGKVLSAKVYYDRDTGDSKGFGESNARLYVFLSFVSYADPDHADDAIARMNGFLIGQKRLKVVRKRGQER 348
            L+ VDA +K      Q+ GP GANLF+Y+LP  L+DA LA AFAPFG V+SAKVY D+ TG+SKGFG           FVSY   D AD AIA MNGF IG KRLKV  KR  +R
Sbjct:  350 LNGVDAAAKVSRTTSQLEGPAGANLFIYHLPHDLTDADLATAFAPFGSVISAKVYMDKITGESKGFG-----------FVSYDSADAADAAIASMNGFQIGSKRLKVQHKRIHQR 453
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BLAST of mRNA_H-elongata_contig5126.12383.1 vs. uniprot
Match: A0A2D4C1J1_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C1J1_PYTIN)

HSP 1 Score: 118 bits (295), Expect = 1.680e-28
Identity = 65/115 (56.52%), Postives = 76/115 (66.09%), Query Frame = 1 
Query:    4 LSIVDAESKSKHWAKQIVGPPGANLFVYYLPRFLSDAGLAKAFAPFGKVLSAKVYYDRDTGDSKGFGESNARLYVFLSFVSYADPDHADDAIARMNGFLIGQKRLKVVRKRGQER 348
            LS V+A +K+     Q+ GP GANLF+Y+LP  L+DA LA AFAPFG V+SAKVY D+ TG+SKGFG           FVSY  P+ AD AIA MNGF IG KRLKV  KR   R
Sbjct:  820 LSGVEAANKASRSTSQLEGPAGANLFIYHLPHDLTDADLATAFAPFGTVISAKVYMDKITGESKGFG-----------FVSYDAPEAADAAIASMNGFQIGSKRLKVQHKRVHHR 923
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BLAST of mRNA_H-elongata_contig5126.12383.1 vs. uniprot
Match: A0A2D4C1H5_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C1H5_PYTIN)

HSP 1 Score: 118 bits (295), Expect = 1.710e-28
Identity = 65/115 (56.52%), Postives = 76/115 (66.09%), Query Frame = 1 
Query:    4 LSIVDAESKSKHWAKQIVGPPGANLFVYYLPRFLSDAGLAKAFAPFGKVLSAKVYYDRDTGDSKGFGESNARLYVFLSFVSYADPDHADDAIARMNGFLIGQKRLKVVRKRGQER 348
            LS V+A +K+     Q+ GP GANLF+Y+LP  L+DA LA AFAPFG V+SAKVY D+ TG+SKGFG           FVSY  P+ AD AIA MNGF IG KRLKV  KR   R
Sbjct: 1263 LSGVEAANKASRSTSQLEGPAGANLFIYHLPHDLTDADLATAFAPFGTVISAKVYMDKITGESKGFG-----------FVSYDAPEAADAAIASMNGFQIGSKRLKVQHKRVHHR 1366
[Close]
BLAST of mRNA_H-elongata_contig5126.12383.1 vs. uniprot
Match: D7FV60_ECTSI (Trinucleotide repeat containing 4, isoform CRA_d n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV60_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 2.600e-28
Identity = 61/93 (65.59%), Postives = 69/93 (74.19%), Query Frame = 1 
Query:   58 GPPGANLFVYYLPRFLSDAGLAKAFAPFGKVLSAKVYYDRDTGDSKGFGESNARLYVFLSFVSYADPDHADDAIARMNGFLIGQKRLKVVRKR 336
            GPPGANLF+Y+LP+ LSDA LA AFAPFG VLSAKVY DR +G+SKGFG           FVSY+ P HA+ AIA+MNGF IG KRLKV  KR
Sbjct:  366 GPPGANLFIYHLPQDLSDADLATAFAPFGHVLSAKVYIDRASGESKGFG-----------FVSYSLPSHAEAAIAQMNGFQIGSKRLKVQHKR 447
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BLAST of mRNA_H-elongata_contig5126.12383.1 vs. uniprot
Match: A0A662WJB0_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WJB0_9STRA)

HSP 1 Score: 115 bits (289), Expect = 6.410e-28
Identity = 63/112 (56.25%), Postives = 74/112 (66.07%), Query Frame = 1 
Query:   13 VDAESKSKHWAKQIVGPPGANLFVYYLPRFLSDAGLAKAFAPFGKVLSAKVYYDRDTGDSKGFGESNARLYVFLSFVSYADPDHADDAIARMNGFLIGQKRLKVVRKRGQER 348
            V+A +K+     Q+ GP GANLF+Y+LP  L+DA LA AFAPFG V+SAKVY D+ TG+SKGFG           FVSY   D AD AIA MNGF IG KRLKV  KR  +R
Sbjct:  358 VEAAAKASRTTSQLEGPTGANLFIYHLPHDLTDADLATAFAPFGTVISAKVYMDKITGESKGFG-----------FVSYDSADAADAAIASMNGFQIGSKRLKVQHKRIHQR 458
[Close]
BLAST of mRNA_H-elongata_contig5126.12383.1 vs. uniprot
Match: H3GY92_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GY92_PHYRM)

HSP 1 Score: 115 bits (288), Expect = 6.980e-28
Identity = 63/112 (56.25%), Postives = 74/112 (66.07%), Query Frame = 1 
Query:   13 VDAESKSKHWAKQIVGPPGANLFVYYLPRFLSDAGLAKAFAPFGKVLSAKVYYDRDTGDSKGFGESNARLYVFLSFVSYADPDHADDAIARMNGFLIGQKRLKVVRKRGQER 348
            V+A +K+     Q+ GP GANLF+Y+LP  L+DA LA AFAPFG V+SAKVY D+ TG+SKGFG           FVSY   D AD AIA MNGF IG KRLKV  KR  +R
Sbjct:  323 VEAAAKASRTTSQLEGPTGANLFIYHLPHDLTDADLATAFAPFGTVISAKVYMDKITGESKGFG-----------FVSYDSADAADAAIASMNGFQIGTKRLKVQHKRIHQR 423
[Close]
BLAST of mRNA_H-elongata_contig5126.12383.1 vs. uniprot
Match: A0A3R7A6Y7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R7A6Y7_9STRA)

HSP 1 Score: 112 bits (280), Expect = 1.940e-27
Identity = 64/115 (55.65%), Postives = 72/115 (62.61%), Query Frame = 1 
Query:   19 AESKSKHWAKQIVGPPGANLFVYYLPRFLSDAGLAKAFAPFGKVLSAKVYYDRDTGDSKGFGESNARLYV-----FLSFVSYADPDHADDAIARMNGFLIGQKRLKVVRKRGQER 348
            A S +   A QI GP GANLF+Y+LP  L+DA LA AFAPFG V+SAKVY D++TG+SKGFG S              FVSY     AD AIA MNGF IG KRLKV  KR   R
Sbjct:  208 ASSDAARSAAQIEGPVGANLFIYHLPHDLTDADLATAFAPFGTVISAKVYMDKNTGESKGFGTSCGGRGTRDECGVAGFVSYDSAQAADAAIASMNGFQIGSKRLKVQHKRVHHR 322
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5126.12383.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K0Y1_9PHAE4.200e-3968.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FV61_ECTSI2.140e-3365.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A8K1CEG0_PYTOL6.720e-3057.39Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3WWH8_GLOUD1.040e-2856.52Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A2D4C1J1_PYTIN1.680e-2856.52Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A2D4C1H5_PYTIN1.710e-2856.52Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
D7FV60_ECTSI2.600e-2865.59Trinucleotide repeat containing 4, isoform CRA_d n... [more]
A0A662WJB0_9STRA6.410e-2856.25Uncharacterized protein (Fragment) n=2 Tax=Nothoph... [more]
H3GY92_PHYRM6.980e-2856.25Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A3R7A6Y7_9STRA1.940e-2755.65Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5126contigH-elongata_contig5126:5684..6235 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score127.5
Seed ortholog evalue4.1e-27
Seed eggNOG ortholog2880.D7FV61
KEGG koko:K13207
EggNOG free text desc.positive regulation of mRNA splicing, via spliceosome
EggNOG OGsKOG0144@1,KOG0146@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03041
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNucleotide-binding alpha-beta plait domain
Ec32 orthologEc-12_007410.1
Exons2
Model size348
Cds size348
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930839.1481435-CDS-H-elongata_contig5126:5683..59181622930839.1481435-CDS-H-elongata_contig5126:5683..5918Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5126 5684..5918 +
1691679592.2299347-CDS-H-elongata_contig5126:5683..59181691679592.2299347-CDS-H-elongata_contig5126:5683..5918Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5126 5684..5918 +
1622930839.167717-CDS-H-elongata_contig5126:6122..62351622930839.167717-CDS-H-elongata_contig5126:6122..6235Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5126 6123..6235 +
1691679592.2404957-CDS-H-elongata_contig5126:6122..62351691679592.2404957-CDS-H-elongata_contig5126:6122..6235Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5126 6123..6235 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5126.12383.1prot_H-elongata_contig5126.12383.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5126 5684..6235 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5126.12383.1

>prot_H-elongata_contig5126.12383.1 ID=prot_H-elongata_contig5126.12383.1|Name=mRNA_H-elongata_contig5126.12383.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=116bp
DLSIVDAESKSKHWAKQIVGPPGANLFVYYLPRFLSDAGLAKAFAPFGKV
LSAKVYYDRDTGDSKGFGESNARLYVFLSFVSYADPDHADDAIARMNGFL
IGQKRLKVVRKRGQER
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mRNA from alignment at H-elongata_contig5126:5684..6235+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5126.12383.1 ID=mRNA_H-elongata_contig5126.12383.1|Name=mRNA_H-elongata_contig5126.12383.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=552bp|location=Sequence derived from alignment at H-elongata_contig5126:5684..6235+ (Himanthalia elongata Himel1 dioecious)
GACCTGTCGATAGTTGACGCAGAGAGCAAGAGCAAGCACTGGGCGAAGCA
GATCGTGGGCCCTCCAGGCGCAAATCTGTTCGTATACTACCTTCCGAGGT
TTCTATCAGACGCAGGCCTAGCGAAAGCCTTCGCCCCCTTCGGAAAGGTG
CTAAGCGCCAAGGTTTACTACGATCGGGACACCGGAGATAGCAAAGGTTT
CGGTGAGAGCAACGCCAGACTATATGTATTTTTGAGTAGAAAAATATAGA
ACCCGGTATCTCCGGTATGCTTTGTTTCGGTGCGGCTTCTGGCCTCAATA
CATAGTTATAGCCGTGACTCCATAGTGATACATAGTTATAGCGGGTCCAT
CAATTTCCCCCCGGGCTCGAGTGCCTGATCTGTCTTAACCCGGCGGTGGA
AGTGATTTCTCTTCCTCTTGCGGTGGTTACTGCTGGCAGGTTTCGTGAGC
TACGCTGACCCCGACCACGCGGACGACGCTATCGCCCGAATGAATGGCTT
CCTCATCGGCCAGAAACGCTTGAAGGTAGTCAGGAAACGGGGACAAGAAA
GA
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Coding sequence (CDS) from alignment at H-elongata_contig5126:5684..6235+

>mRNA_H-elongata_contig5126.12383.1 ID=mRNA_H-elongata_contig5126.12383.1|Name=mRNA_H-elongata_contig5126.12383.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=696bp|location=Sequence derived from alignment at H-elongata_contig5126:5684..6235+ (Himanthalia elongata Himel1 dioecious)
GACCTGTCGATAGTTGACGCAGAGAGCAAGAGCAAGCACTGGGCGAAGCA
GATCGTGGGCCCTCCAGGCGCAAATCTGTTCGTATACTACCTTCCGAGGT
TTCTATCAGACGCAGGCCTAGCGAAAGCCTTCGCCCCCTTCGGAAAGGTG
CTAAGCGCCAAGGTTTACTACGATCGGGACACCGGAGATAGCAAAGGTTT
CGGTGAGAGCAACGCCAGACTATATGTATTTTTGAGACCTGTCGATAGTT
GACGCAGAGAGCAAGAGCAAGCACTGGGCGAAGCAGATCGTGGGCCCTCC
AGGCGCAAATCTGTTCGTATACTACCTTCCGAGGTTTCTATCAGACGCAG
GCCTAGCGAAAGCCTTCGCCCCCTTCGGAAAGGTGCTAAGCGCCAAGGTT
TACTACGATCGGGACACCGGAGATAGCAAAGGTTTCGGTGAGAGCAACGC
CAGACTATATGTATTTTTGAGTTTCGTGAGCTACGCTGACCCCGACCACG
CGGACGACGCTATCGCCCGAATGAATGGCTTCCTCATCGGCCAGAAACGC
TTGAAGGTAGTCAGGAAACGGGGACAAGAAAGAGTTTCGTGAGCTACGCT
GACCCCGACCACGCGGACGACGCTATCGCCCGAATGAATGGCTTCCTCAT
CGGCCAGAAACGCTTGAAGGTAGTCAGGAAACGGGGACAAGAAAGA
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