mRNA_H-elongata_contig51155.12375.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig51155.12375.1
Unique NamemRNA_H-elongata_contig51155.12375.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig51155.12375.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig51155contigH-elongata_contig51155:3403..4074 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size672
Cds size372
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig51155.12375.1prot_H-elongata_contig51155.12375.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig51155 3626..3997 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930838.1053915-UTR-H-elongata_contig51155:3402..36251622930838.1053915-UTR-H-elongata_contig51155:3402..3625Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig51155 3403..3625 +
1691679591.8559706-UTR-H-elongata_contig51155:3402..36251691679591.8559706-UTR-H-elongata_contig51155:3402..3625Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig51155 3403..3625 +
1622930838.1379926-UTR-H-elongata_contig51155:3997..40741622930838.1379926-UTR-H-elongata_contig51155:3997..4074Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig51155 3998..4074 +
1691679591.878837-UTR-H-elongata_contig51155:3997..40741691679591.878837-UTR-H-elongata_contig51155:3997..4074Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig51155 3998..4074 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930838.1215754-CDS-H-elongata_contig51155:3625..39971622930838.1215754-CDS-H-elongata_contig51155:3625..3997Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51155 3626..3997 +
1691679591.8647788-CDS-H-elongata_contig51155:3625..39971691679591.8647788-CDS-H-elongata_contig51155:3625..3997Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51155 3626..3997 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig51155.12375.1

>prot_H-elongata_contig51155.12375.1 ID=prot_H-elongata_contig51155.12375.1|Name=mRNA_H-elongata_contig51155.12375.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=124bp
MTRSSEGEVGPPVVVRASPTPPAFDASTRTGAAATGQSLVVEQEQEQRVS
RGGREEVLAEVSRMTGVVFPVGPGALPALLPAPPQLCHRNCNRSWIWRRR
RRTLRHPPAPISVCGRRFRVERS*
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mRNA from alignment at H-elongata_contig51155:3403..4074+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig51155.12375.1 ID=mRNA_H-elongata_contig51155.12375.1|Name=mRNA_H-elongata_contig51155.12375.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=672bp|location=Sequence derived from alignment at H-elongata_contig51155:3403..4074+ (Himanthalia elongata Himel1 dioecious)
CTTCCTACGTATTCATCGGGAACGGTGGCGACGGTGGTGGGCTCGAGCGA
GGGCGGAGTCGGGCCGCCGGTGGTAGTGAGTACTTCGCACGGGGAGGTTG
TTCCCATCGCGTTTTCATTGGAGGTGGCACCGGCGCCATTGGCAGACCCA
AGTGAGGGGAGGATTCTTCTCACGTCCCCACCGGAAGTGGCGGTGACGGC
GGCGGGATCTTTGGAGGTGGGAGATGACAAGATCGAGCGAGGGCGAAGTC
GGGCCGCCGGTGGTAGTGAGGGCGTCGCCTACGCCACCCGCGTTCGACGC
TTCCACTAGAACTGGAGCAGCTGCAACCGGACAATCTTTAGTGGTGGAGC
AGGAGCAGGAGCAGCGGGTGTCGCGTGGTGGGCGTGAAGAGGTTCTCGCG
GAAGTTTCGCGGATGACCGGGGTCGTTTTTCCGGTGGGTCCAGGTGCCTT
GCCTGCGCTCTTACCTGCCCCTCCCCAACTCTGCCACAGGAACTGCAATC
GGAGCTGGATCTGGAGGCGCCGGAGACGTACGCTTAGGCACCCGCCGGCC
CCAATATCGGTATGTGGACGGAGGTTCAGGGTTGAGAGGTCTTGAAGCCG
CATGCATCGTTGACTTTGTGTTCGATATTCGTTGATTTTTTTTTTTTTTT
TTTTTTTTTAAACTTTATTACC
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Coding sequence (CDS) from alignment at H-elongata_contig51155:3403..4074+

>mRNA_H-elongata_contig51155.12375.1 ID=mRNA_H-elongata_contig51155.12375.1|Name=mRNA_H-elongata_contig51155.12375.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=744bp|location=Sequence derived from alignment at H-elongata_contig51155:3403..4074+ (Himanthalia elongata Himel1 dioecious)
ATGACAAGATCGAGCGAGGGCGAAGTCGGGCCGCCGGTGGTAGTGAGGGC
GTCGCCTACGCCACCCGCGTTCGACGCTTCCACTAGAACTGGAGCAGCTG
CAACCGGACAATCTTTAGTGGTGGAGCAGGAGCAGGAGCAGCGGGTGTCG
CGTGGTGGGCGTGAAGAGGTTCTCGCGGAAGTTTCGCGGATGACCGGGGT
CGTTTTTCCGGTGGGTCCAGGTGCCTTGCCTGCGCTCTTACCTGCCCCTC
CCCAACTCTGCCACAGGAACTGCAATCGGAGCTGGATCTGGAGGCGCCGG
AGACGTACGCTTAGGCACCCGCCGGCCCCAATATCGGTATGTGGACGGAG
GTTCAGGGTTGAGAGGTCTTGAATGACAAGATCGAGCGAGGGCGAAGTCG
GGCCGCCGGTGGTAGTGAGGGCGTCGCCTACGCCACCCGCGTTCGACGCT
TCCACTAGAACTGGAGCAGCTGCAACCGGACAATCTTTAGTGGTGGAGCA
GGAGCAGGAGCAGCGGGTGTCGCGTGGTGGGCGTGAAGAGGTTCTCGCGG
AAGTTTCGCGGATGACCGGGGTCGTTTTTCCGGTGGGTCCAGGTGCCTTG
CCTGCGCTCTTACCTGCCCCTCCCCAACTCTGCCACAGGAACTGCAATCG
GAGCTGGATCTGGAGGCGCCGGAGACGTACGCTTAGGCACCCGCCGGCCC
CAATATCGGTATGTGGACGGAGGTTCAGGGTTGAGAGGTCTTGA
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