mRNA_H-elongata_contig51137.12372.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig51137.12372.1
Unique NamemRNA_H-elongata_contig51137.12372.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig51137.12372.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig51137contigH-elongata_contig51137:1303..1673 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size159
Cds size159
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930837.7728868-CDS-H-elongata_contig51137:1302..13811622930837.7728868-CDS-H-elongata_contig51137:1302..1381Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51137 1303..1381 -
1691679591.7378697-CDS-H-elongata_contig51137:1302..13811691679591.7378697-CDS-H-elongata_contig51137:1302..1381Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51137 1303..1381 -
1622930837.8065586-CDS-H-elongata_contig51137:1593..16731622930837.8065586-CDS-H-elongata_contig51137:1593..1673Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51137 1594..1673 -
1691679591.748747-CDS-H-elongata_contig51137:1593..16731691679591.748747-CDS-H-elongata_contig51137:1593..1673Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51137 1594..1673 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig51137.12372.1prot_H-elongata_contig51137.12372.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig51137 1303..1673 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig51137.12372.1

>prot_H-elongata_contig51137.12372.1 ID=prot_H-elongata_contig51137.12372.1|Name=mRNA_H-elongata_contig51137.12372.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=53bp
EGISRAGRNQTRRMHRGRKSWWWYVCGQEQERGRAVEMNMLEELVTHLSN
QLK
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mRNA from alignment at H-elongata_contig51137:1303..1673-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig51137.12372.1 ID=mRNA_H-elongata_contig51137.12372.1|Name=mRNA_H-elongata_contig51137.12372.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=371bp|location=Sequence derived from alignment at H-elongata_contig51137:1303..1673- (Himanthalia elongata Himel1 dioecious)
GAGGGAATCTCTAGGGCCGGACGAAATCAGACTCGGCGGATGCATCGAGG
AAGGAAGTCGTGGTGGTGGTACGTGTGTGGGTGCGTATTTTTCAAATTGC
GCCCCTTCTCGACACAAACACATACACACGCTATTCCCCCCATTCCCTCT
TGCATTGTAACATAACGCCTCCGCCTTCATGACGCTCTTTTGACCCCGAA
ACCGCGAGACAGAACAGGCGAGGCTCCTCCAATTGTTTTTTCTATACAGA
AGTCGAAATAAGCTCGACCCCCTCCCCCTACCTTCTCGACAGACAAGAGC
AAGAGCGAGGGCGCGCCGTGGAGATGAATATGTTGGAGGAACTGGTGACC
CATCTGTCCAATCAGCTCAAA
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Coding sequence (CDS) from alignment at H-elongata_contig51137:1303..1673-

>mRNA_H-elongata_contig51137.12372.1 ID=mRNA_H-elongata_contig51137.12372.1|Name=mRNA_H-elongata_contig51137.12372.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=318bp|location=Sequence derived from alignment at H-elongata_contig51137:1303..1673- (Himanthalia elongata Himel1 dioecious)
GAGGGAATCTCTAGGGCCGGACGAAATCAGACTCGGCGGATGCATCGAGG
AAGGAAGTCGTGGTGGTGGTACGTGTGTGGGAGGGAATCTCTAGGGCCGG
ACGAAATCAGACTCGGCGGATGCATCGAGGAAGGAAGTCGTGGTGGTGGT
ACGTGTGTGGACAAGAGCAAGAGCGAGGGCGCGCCGTGGAGATGAATATG
TTGGAGGAACTGGTGACCCATCTGTCCAATCAGCTCAAAACAAGAGCAAG
AGCGAGGGCGCGCCGTGGAGATGAATATGTTGGAGGAACTGGTGACCCAT
CTGTCCAATCAGCTCAAA
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