mRNA_H-elongata_contig51093.12371.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig51093.12371.1 vs. uniprot
Match: D7FT55_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT55_ECTSI) HSP 1 Score: 239 bits (611), Expect = 2.340e-73 Identity = 126/251 (50.20%), Postives = 154/251 (61.35%), Query Frame = 1
Query: 1 SVEGAPECGCIETMPVVSRADCSTFSRGGLTACNNNDLNKHYNNKLGAPGGDLESNLVGTCDNVNAPVYVNYSSSAERSTSSSSYDEDTAVEAVLAACEYNTYMCCWTQND-QGIQDNTDVCRVVDSPSEGQTTEYPGDSEGPTYCHGFGWAEGDEFLSVQLPLYHYVINYD-QDFRGYYGNIEGAPACGCIEEMPVVSYANCTTFSRD-----ELTACQDNDLRKHHKNRLQAPGGSLDVNLVITCDNED 732
+VEGAPECGCIE MP VS ++CS +S G+ C NN L Y +LG P G ++ NLV TCDN + P Y +C +NTYMCCWT+ND +G+ DNTDVCRVVD PS G+T E+PGDSEG +CHGF W E + L L +V N+D +D RGYYGNIEGAP CGCIEEMPVVS A+CTT+ D + TAC NDLR ++ + P G L NLV TCDN +
Sbjct: 249 NVEGAPECGCIEEMPQVSYSECSRYSWEGIVGCGNNGLLSQYRGRLGEPYGPMDDNLVRTCDNEDVPDYD------------------------YGSCSHNTYMCCWTENDGEGMADNTDVCRVVDYPSMGETLEFPGDSEGEVHCHGFVWPEDATDKYIHL-LSQFVQNFDHRDRRGYYGNIEGAPMCGCIEEMPVVSEADCTTYDTDPEREGKFTACTKNDLRTRYE--AEYPTGEL-ANLVDTCDNAE 471
BLAST of mRNA_H-elongata_contig51093.12371.1 vs. uniprot
Match: D7G2N2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2N2_ECTSI) HSP 1 Score: 238 bits (606), Expect = 4.560e-70 Identity = 126/251 (50.20%), Postives = 151/251 (60.16%), Query Frame = 1
Query: 1 SVEGAPECGCIETMPVVSRADCSTFSRGGLTACNNNDLNKHYNNKLGAPGGDLESNLVGTCDNVNAPVYVNYSSSAERSTSSSSYDEDTAVEAVLAACEYNTYMCCWTQND-QGIQDNTDVCRVVDSPSEGQTTEYPGDSEGPTYCHGFGWAEGDEFLSVQLPLYHYVINYD-QDFRGYYGNIEGAPACGCIEEMPVVSYANCTTFSRD-----ELTACQDNDLRKHHKNRLQAPGGSLDVNLVITCDNED 732
+VEG P CGCIE MPVVS A CS F R G+ C N L HY N+L P G+LE NLV CDN + P Y C +NTYMCCWT+ND QG+ DNTDVCRV+D PS G+TTEYPG+SEG +CHGF W E + L L +V ++D +D RGY+GNIEGAP CGCIEEMP VS A+CTT+ + + TAC NDLR ++ P G LD NLV CDNE+
Sbjct: 220 NVEGVPSCGCIEDMPVVSDAACSRFGREGIEPCGANSLRSHYKNRLDEPKGELEYNLVRECDNEDVPDYD------------------------FRTCNHNTYMCCWTENDGQGMADNTDVCRVIDYPSMGETTEYPGESEGEVHCHGFVWPEDATDKYIHL-LAQFVQHFDHRDRRGYFGNIEGAPMCGCIEEMPQVSEADCTTYDNEPGREGKFTACTKNDLRTRYEEEY--PMGELD-NLVGECDNEE 442
BLAST of mRNA_H-elongata_contig51093.12371.1 vs. uniprot
Match: D7G2N0_ECTSI (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D7G2N0_ECTSI) HSP 1 Score: 227 bits (579), Expect = 2.040e-68 Identity = 122/251 (48.61%), Postives = 149/251 (59.36%), Query Frame = 1
Query: 1 SVEGAPECGCIETMPVVSRADCSTFSRGGLTACNNNDLNKHYNNKLGAPGGDLESNLVGTCDNVNAPVYVNYSSSAERSTSSSSYDEDTAVEAVLAACEYNTYMCCWTQND-QGIQDNTDVCRVVDSPSEGQTTEYPGDSEGPTYCHGFGWAEGDEFLSVQLPLYHYVINYD-QDFRGYYGNIEGAPACGCIEEMPVVSYANCTTFSRD-----ELTACQDNDLRKHHKNRLQAPGGSLDVNLVITCDNED 732
+VEG P CGCIE MPVVS A CS F G+ C +N L Y KL P G++E NLV CDN + P Y C +NTYMCCWT+ND QG+ DNTDVCRV+D PS G+TTEYPG+SEG +CHGF W E + L L +V ++D +D RGY+GNIEGAP CGCIEEMP VS A+CTT+ + + TAC +NDLR ++ P G LD NLV CDN +
Sbjct: 263 NVEGVPSCGCIEDMPVVSDAACSKFGGEGIEPCWDNSLRSQYKYKLDEPKGEMEYNLVRECDNEDVPDYD------------------------FRTCNHNTYMCCWTENDGQGMADNTDVCRVIDYPSMGETTEYPGESEGEVHCHGFVWPEDATDKYIHL-LAQFVQHFDHRDRRGYFGNIEGAPMCGCIEEMPQVSEADCTTYDNEPGREGKFTACTNNDLRTRYEEEY--PMGELD-NLVGECDNAE 485
BLAST of mRNA_H-elongata_contig51093.12371.1 vs. uniprot
Match: D7FT54_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT54_ECTSI) HSP 1 Score: 211 bits (536), Expect = 9.800e-63 Identity = 112/250 (44.80%), Postives = 143/250 (57.20%), Query Frame = 1
Query: 1 SVEGAPECGCIETMPVVSRADCSTFSRGGLTACNNNDLNKHYNNKLGAPGGDLESNLVGTCDNVNAPVYVNYSSSAERSTSSSSYDEDTAVEAVLAACEYNTYMCCWTQND-QGIQDNTDVCRVVDSPSEGQTTEYPGDSEGPTYCHGFGWAEGDEFLSVQLPLYHYVINYDQ-DFRGYYGNIEGAPACGCIEEMPVVSYANCTTFS-----RDELTACQDNDLRKHHKNRLQAPGGSLDVNLVITCDNE 729
+VEGAP+CGC+E MPVVS ++CS F G+T C + L +Y +++ P G LE NLV CDN + P + C+ +TYMCCWT+ND +G+ DNTDVCR+ D PS G+T EYPGDSEG +CHG W E + L L YV +D +GYYGNIEGAP CGC E+MP VS A+CT +S D + C NDLR + + P G LD NLV CDN+
Sbjct: 197 NVEGAPQCGCLEEMPVVSFSECSRFDGDGITDCGEHGLYSNYVSRIDEPNGPLEDNLVRICDNYDVPDFD------------------------FRECDSHTYMCCWTENDAKGVLDNTDVCRIHDYPSAGETLEYPGDSEGDVHCHGIVWPEDATDKYIHL-LAQYVQTFDHIGNKGYYGNIEGAPMCGCAEDMPEVSKADCTNYSPTEEDEDRIRGCDPNDLRTRYD--VLYPDGDLD-NLVGRCDNQ 418
BLAST of mRNA_H-elongata_contig51093.12371.1 vs. uniprot
Match: A0A6H5JT81_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT81_9PHAE) HSP 1 Score: 184 bits (468), Expect = 2.660e-54 Identity = 83/150 (55.33%), Postives = 103/150 (68.67%), Query Frame = 1
Query: 292 CEYNTYMCCWTQND--QGIQDNTDVCRVVDSPSEGQTTEYPGDSEGPTYCHGFGWAEGDEFLSVQLPLYHYVINYDQ-DFRGYYGNIEGAPACGCIEEMPVVSYANCTTFSRDELTACQDNDLRKHHKNRLQAPGGSLDVNLVITCDNED 732
CE+NTYMCCWT +D +G+ N DVCRV++ P EG E P D EGP YCHGF WA+G + S LPLYHYV N ++ D GYYGN+EG P+CGCIE+MPVVS A C+ F + + C DN LR +K +L P G ++ NLV CDNED
Sbjct: 14 CEWNTYMCCWTGHDGSKGMYGNADVCRVLNYPEEGDVLELPRDDEGPVYCHGFAWADGADIDSHILPLYHYVTNVNRTDDGGYYGNVEGVPSCGCIEDMPVVSDAACSKFGGEGIEPCWDNSLRSQYKYKLDEPKGEMEYNLVRECDNED 163
BLAST of mRNA_H-elongata_contig51093.12371.1 vs. uniprot
Match: D7FT53_ECTSI (Imm downregulated 17 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT53_ECTSI) HSP 1 Score: 176 bits (447), Expect = 2.800e-52 Identity = 92/174 (52.87%), Postives = 113/174 (64.94%), Query Frame = 1
Query: 220 SSAERSTSSSSYDEDTAVEAVL-AACEYNTYMCCWTQND--QGIQDNTDVCRVVDSPSEGQTTEYPGDSEGPTYCHGFGWAEGDEFLSVQLPLYHYVINYD--QDFRGYYGNIEGAPACGCIEEMPVVSYANCTTFSRDELTACQDNDLRKHHKNRLQAPGGSLDVNLVITCDN 726
SSA S S+YDED V +L CE++TYMCC+T +D +G+ NTDVC V PSEG E PGDSEGP YCHGF W EG + + LPLYHYV N ++ GYYGN+EGAP CGCIEEMP VS+A C+ FS D + C + L + RL AP G ++ NLV +CDN
Sbjct: 13 SSASDGGSCSTYDEDLEVAKLLDGTCEWDTYMCCYTNHDSGEGVTANTDVCSV---PSEG--LEMPGDSEGPVYCHGFAWPEGADVNNHILPLYHYVKNIGRTEEEGGYYGNVEGAPECGCIEEMPQVSFAECSRFSIDGIGECGEGGLYSQYNGRLDAPYGEMEHNLVRSCDN 181
BLAST of mRNA_H-elongata_contig51093.12371.1 vs. uniprot
Match: A0A6H5L9G6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9G6_9PHAE) HSP 1 Score: 150 bits (379), Expect = 4.700e-42 Identity = 78/174 (44.83%), Postives = 103/174 (59.20%), Query Frame = 1
Query: 220 SSAERSTSSSSYDEDTAVEAVLA-ACEYNTYMCCWTQND--QGIQDNTDVCRVVDSPSEGQTTEYPGDSEGPTYCHGFGWAEGDEFLSVQLPLYHYVINYD--QDFRGYYGNIEGAPACGCIEEMPVVSYANCTTFSRDELTACQDNDLRKHHKNRLQAPGGSLDVNLVITCDN 726
SSA S ++YDED V +L CE++TYMCC+T +D +G+ NTDVC V +EG YCHGF W +G + + LPLYHYV N ++ GYYG++EGAP CGCIEEMP VS+A C+ F D + C + L + RL AP G ++ NLV +CDN
Sbjct: 20 SSASDGGSCTTYDEDLEVAKLLDDTCEWDTYMCCFTNHDSGEGVTANTDVCSVP--------------NEGSVYCHGFAWPDGADVNNHILPLYHYVKNIGRTEEEGGYYGSVEGAPECGCIEEMPQVSFAECSRFDIDGIVGCGEGGLYSQYNGRLGAPYGEMEHNLVRSCDN 179
BLAST of mRNA_H-elongata_contig51093.12371.1 vs. uniprot
Match: A0A6H5L319_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L319_9PHAE) HSP 1 Score: 157 bits (397), Expect = 6.260e-42 Identity = 80/173 (46.24%), Postives = 108/173 (62.43%), Query Frame = 1
Query: 241 SSSSYDEDTAVEAVL-AACEYNTYMCCWTQND--QGIQDNTDVCRVVDSPSEGQTTEYPGDSEGPTYCHGFGWAEGDEFLSVQLPLYHYVINYDQ-DFRGYY-----GNIEGAPACGCIEEMPVVSYANCTTFSRDELTACQDNDLRKHHKNRLQAPGGSLDVNLVITCDNED 732
S S+Y+E V +L + CE++ YMCCWT ND G+ N+DVCRV+D P EG + E P +SEG CHGF WAEG + + LPLYHYV N + + G+Y ++EG P CGCIEE+P VS + C+ +S + + C +N L ++ L P G +D NLV TCDNED
Sbjct: 28 SCSTYEEHVEVAKLLDSTCEWDPYMCCWTGNDGADGMTANSDVCRVLDYPEEGDSFEMPRESEGFVCCHGFAWAEGADVDTHILPLYHYVKNVGRTEEAGFYEMKLPDSVEGTPECGCIEEIPSVSCSECSRYSWEGIAGCGNNGLLSQYRGCLGEPCGPMDDNLVRTCDNED 200
BLAST of mRNA_H-elongata_contig51093.12371.1 vs. uniprot
Match: A0A7S2I1I6_9STRA (Hypothetical protein n=2 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2I1I6_9STRA) HSP 1 Score: 90.5 bits (223), Expect = 1.290e-17 Identity = 53/141 (37.59%), Postives = 69/141 (48.94%), Query Frame = 1
Query: 262 DTAVE-----AVLAACEYNTYMCCWTQNDQGIQ---------------DNTDVCRV--VDSPSEGQTTE----YPGDSEGPTYCHGFGWAEGDEFLSVQLPLYHYVINYDQDFRGYYGNIEGAPACGCIEEMPVVSYANCT 606
DT +E A C + MCCWT + + DNTDVC V +SP T + +PGD+EGP +C GF W E DE L+H V+ GY N+ GAP CGC+E+MPVVS+A C+
Sbjct: 132 DTVIEWPDYLANFQECHHRAAMCCWTADKYNVGGGSCTSAGCADGDPLDNTDVCHVDMKNSPLAAHTRDGVAVFPGDAEGPVHCQGFAWDEKDEMFRGNA-LFHVVMK-GLLSNGYTRNVPGAPMCGCVEQMPVVSHAVCS 270
BLAST of mRNA_H-elongata_contig51093.12371.1 vs. uniprot
Match: A0A7S1VY93_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1VY93_9STRA) HSP 1 Score: 85.5 bits (210), Expect = 1.600e-15 Identity = 52/147 (35.37%), Postives = 69/147 (46.94%), Query Frame = 1
Query: 292 CEYNTYMCCWTQN-------------------DQGIQDNTDVCRVVDS--PSEGQTTE----YPGDSEGPTYCHGFGWAE--GDEFLSVQLPLYHYVINYDQ-DFRGYYGNIEGAPACGCIEEMPVVSYANCTTFSRDELTACQDND 648
C N MCCW Q+ D DNTD+C V S P+ +T++ + G+ EG ++CHGF W + DE + YV YD RGY N+ GAP CGC+E+M VV+ A+CT S E ND
Sbjct: 112 CTLNAAMCCWVQDRQAGDNNGNCATPYDENCVDADPADNTDICYVDMSRAPASSRTSDGFSLFEGEEEGDSHCHGFAWDKDPSDESALFKGNNLFYVSFYDHLQQRGYVRNVPGAPMCGCVEQMAVVTRADCTEISTSETVEFSFND 258 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig51093.12371.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig51093.12371.1 >prot_H-elongata_contig51093.12371.1 ID=prot_H-elongata_contig51093.12371.1|Name=mRNA_H-elongata_contig51093.12371.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=244bp SVEGAPECGCIETMPVVSRADCSTFSRGGLTACNNNDLNKHYNNKLGAPGback to top mRNA from alignment at H-elongata_contig51093:259..1774+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig51093.12371.1 ID=mRNA_H-elongata_contig51093.12371.1|Name=mRNA_H-elongata_contig51093.12371.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1516bp|location=Sequence derived from alignment at H-elongata_contig51093:259..1774+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig51093:259..1774+ >mRNA_H-elongata_contig51093.12371.1 ID=mRNA_H-elongata_contig51093.12371.1|Name=mRNA_H-elongata_contig51093.12371.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1464bp|location=Sequence derived from alignment at H-elongata_contig51093:259..1774+ (Himanthalia elongata Himel1 dioecious)back to top |