mRNA_H-elongata_contig51088.12370.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig51088.12370.1
Unique NamemRNA_H-elongata_contig51088.12370.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig51088.12370.1 vs. uniprot
Match: D7FNB2_ECTSI (SSD domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNB2_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 1.030e-31
Identity = 59/79 (74.68%), Postives = 67/79 (84.81%), Query Frame = 1
Query:    1 RLLNRYYLPVLFSNGGKFLTLAIAAGLAVLGVFGLSGLRMGLEPQLAAPTDFYLQDYYEAQISLGEAGPPAYVVLTDVD 237
            R + RYYLP LFS GGK LTLA+AA LA LG  G+ GL+MGLEPQLAAPTDFYLQDYY+AQ S+GEAGPPAYVV +D+D
Sbjct:  940 RFIERYYLPALFSRGGKALTLAVAAALAFLGCLGMHGLQMGLEPQLAAPTDFYLQDYYDAQFSMGEAGPPAYVVFSDLD 1018          
BLAST of mRNA_H-elongata_contig51088.12370.1 vs. uniprot
Match: K8YSC8_NANGC (Niemann-Pick C1 protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YSC8_NANGC)

HSP 1 Score: 88.2 bits (217), Expect = 1.300e-18
Identity = 41/79 (51.90%), Postives = 56/79 (70.89%), Query Frame = 1
Query:    1 RLLNRYYLPVLFSNGGKFLTLAIAAGLAVLGVFGLSGLRMGLEPQLAAPTDFYLQDYYEAQISLGEAGPPAYVVLTDVD 237
            R +++ YLP L S  GK     +   L +LG++G++ L +GLEPQLAAP+DFYL DYY  + +LGEAGPP Y+VL D+D
Sbjct:  223 RCMDKGYLPCLMSRAGKTAVGGLGLLLLILGLWGITTLELGLEPQLAAPSDFYLVDYYNTEFTLGEAGPPLYLVLKDLD 301          
BLAST of mRNA_H-elongata_contig51088.12370.1 vs. uniprot
Match: W7TJL6_9STRA (Patched family protein (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJL6_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 1.300e-18
Identity = 41/79 (51.90%), Postives = 56/79 (70.89%), Query Frame = 1
Query:    1 RLLNRYYLPVLFSNGGKFLTLAIAAGLAVLGVFGLSGLRMGLEPQLAAPTDFYLQDYYEAQISLGEAGPPAYVVLTDVD 237
            R +++ YLP L S  GK     +   L +LG++G++ L +GLEPQLAAP+DFYL DYY  + +LGEAGPP Y+VL D+D
Sbjct:  267 RCMDKGYLPCLMSRAGKTAVGGLGLLLLILGLWGITTLELGLEPQLAAPSDFYLVDYYNTEFTLGEAGPPLYLVLKDLD 345          
BLAST of mRNA_H-elongata_contig51088.12370.1 vs. uniprot
Match: A0A4D9CZ93_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CZ93_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 7.840e-18
Identity = 38/77 (49.35%), Postives = 55/77 (71.43%), Query Frame = 1
Query:    7 LNRYYLPVLFSNGGKFLTLAIAAGLAVLGVFGLSGLRMGLEPQLAAPTDFYLQDYYEAQISLGEAGPPAYVVLTDVD 237
            +++ YLP L S  GK   + +   L +LG++G++ L +GLEPQLAAP+DFYL DYY  + + GEAGPP Y+V+ D+D
Sbjct:    1 MDKGYLPCLMSRAGKIAVVVVGLLLLMLGLWGITTLELGLEPQLAAPSDFYLVDYYNTEFTRGEAGPPLYLVVKDLD 77          
BLAST of mRNA_H-elongata_contig51088.12370.1 vs. uniprot
Match: H3GZV5_PHYRM (SSD domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GZV5_PHYRM)

HSP 1 Score: 81.6 bits (200), Expect = 2.620e-16
Identity = 42/80 (52.50%), Postives = 52/80 (65.00%), Query Frame = 1
Query:    1 RLLNRYYLPVLFSNGGKFLTLAIAAGLAVLGVFGLSGLRMGLEPQLAAPTDFYLQDYYEAQISLGEAGPPAYVVL-TDVD 237
            R + + Y+P L     K L L IA  +  L  FG S L +GLE +LA PTDFYL +Y++ Q +LGEAGPPAYVVL  DVD
Sbjct:  553 RFVEKTYIPFLLRRSTKVLVLVIALSVLTLSAFGSSELPLGLEQELAVPTDFYLHEYFKKQTALGEAGPPAYVVLDNDVD 632          
BLAST of mRNA_H-elongata_contig51088.12370.1 vs. uniprot
Match: A0A3R7XRB7_9STRA (SSD domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3R7XRB7_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 3.580e-16
Identity = 39/75 (52.00%), Postives = 50/75 (66.67%), Query Frame = 1
Query:    1 RLLNRYYLPVLFSNGGKFLTLAIAAGLAVLGVFGLSGLRMGLEPQLAAPTDFYLQDYYEAQISLGEAGPPAYVVL 225
            R + + Y+P L     K L L IA  + +L  FG S L +GLE +LA PTDFYL +Y++ Q +LGEAGPPAYVVL
Sbjct:  520 RFVEKTYIPFLLRRSTKVLVLVIAFAILILSAFGSSKLPLGLEQELAVPTDFYLHEYFKKQTALGEAGPPAYVVL 594          
BLAST of mRNA_H-elongata_contig51088.12370.1 vs. uniprot
Match: A0A6A3P324_9STRA (SSD domain-containing protein n=8 Tax=Phytophthora TaxID=4783 RepID=A0A6A3P324_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 6.680e-16
Identity = 41/80 (51.25%), Postives = 52/80 (65.00%), Query Frame = 1
Query:    1 RLLNRYYLPVLFSNGGKFLTLAIAAGLAVLGVFGLSGLRMGLEPQLAAPTDFYLQDYYEAQISLGEAGPPAYVVL-TDVD 237
            R + + Y+P L     K L L  A  +  L  FG S L +GLE +LA PTDFYL +Y++ Q +LGEAGPPAYVVL +DVD
Sbjct:  557 RFVEKTYIPFLLRRSTKVLVLVTALSIITLSAFGSSELPLGLEQELAVPTDFYLHEYFKKQTALGEAGPPAYVVLDSDVD 636          
BLAST of mRNA_H-elongata_contig51088.12370.1 vs. uniprot
Match: D0NHB7_PHYIT (Resistance-Nodulation-Cell Division (RND) Superfamily n=14 Tax=Phytophthora TaxID=4783 RepID=D0NHB7_PHYIT)

HSP 1 Score: 78.2 bits (191), Expect = 4.330e-15
Identity = 41/80 (51.25%), Postives = 51/80 (63.75%), Query Frame = 1
Query:    1 RLLNRYYLPVLFSNGGKFLTLAIAAGLAVLGVFGLSGLRMGLEPQLAAPTDFYLQDYYEAQISLGEAGPPAYVVL-TDVD 237
            R + R Y+P L     K + L  A     L  FG S L +GLE +LA PTDFYL +Y++ Q +LGEAGPPAYVVL +DVD
Sbjct:  523 RFVERTYIPFLLRRSTKVVVLVTAVLTLTLSAFGSSELPLGLEQELAVPTDFYLHEYFKKQTALGEAGPPAYVVLDSDVD 602          
BLAST of mRNA_H-elongata_contig51088.12370.1 vs. uniprot
Match: A0A421G8C8_9STRA (SSD domain-containing protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421G8C8_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 5.940e-15
Identity = 39/80 (48.75%), Postives = 50/80 (62.50%), Query Frame = 1
Query:    1 RLLNRYYLPVLFSNGGKFLTLAIAAGLAVLGVFGLSGLRMGLEPQLAAPTDFYLQDYYEAQISLGEAGPPAYVVL-TDVD 237
            R + + Y+P L     K + L  A  +  +   G S L +GLE QLA PTDFYL  Y++ Q +LGEAGPPAYVVL +DVD
Sbjct:  691 RFMEKTYIPFLLQRSTKVVVLVTALSILTISALGSSHLPLGLEQQLAVPTDFYLHQYFQKQTALGEAGPPAYVVLDSDVD 770          
BLAST of mRNA_H-elongata_contig51088.12370.1 vs. uniprot
Match: A0A067D4S9_SAPPC (SSD domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067D4S9_SAPPC)

HSP 1 Score: 73.6 bits (179), Expect = 1.820e-13
Identity = 36/77 (46.75%), Postives = 48/77 (62.34%), Query Frame = 1
Query:    7 LNRYYLPVLFSNGGKFLTLAIAAGLAVLGVFGLSGLRMGLEPQLAAPTDFYLQDYYEAQISLGEAGPPAYVVLTDVD 237
            L+  ++P LFS   K L L +  G      +  + + MGLE  LA PTD+YL DY+EAQ   G+AGPPAY+VL DV+
Sbjct:  503 LDTRWIPTLFSARVKTLVLGLWLGWLAWSAYAFTQIPMGLEQTLAIPTDYYLHDYFEAQTKYGDAGPPAYIVLRDVN 579          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig51088.12370.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNB2_ECTSI1.030e-3174.68SSD domain-containing protein n=2 Tax=Ectocarpus T... [more]
K8YSC8_NANGC1.300e-1851.90Niemann-Pick C1 protein n=1 Tax=Nannochloropsis ga... [more]
W7TJL6_9STRA1.300e-1851.90Patched family protein (Fragment) n=1 Tax=Nannochl... [more]
A0A4D9CZ93_9STRA7.840e-1849.35Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
H3GZV5_PHYRM2.620e-1652.50SSD domain-containing protein n=1 Tax=Phytophthora... [more]
A0A3R7XRB7_9STRA3.580e-1652.00SSD domain-containing protein n=1 Tax=Peronospora ... [more]
A0A6A3P324_9STRA6.680e-1651.25SSD domain-containing protein n=8 Tax=Phytophthora... [more]
D0NHB7_PHYIT4.330e-1551.25Resistance-Nodulation-Cell Division (RND) Superfam... [more]
A0A421G8C8_9STRA5.940e-1548.75SSD domain-containing protein n=4 Tax=Phytophthora... [more]
A0A067D4S9_SAPPC1.820e-1346.75SSD domain-containing protein n=2 Tax=Saprolegnia ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig51088contigH-elongata_contig51088:1248..1989 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score125.2
Seed ortholog evalue1.4e-26
Seed eggNOG ortholog2880.D7FNB2
KEGG koko:K12385
KEGG TC2.A.6.6
KEGG Pathwayko04142,ko04979,map04142,map04979
EggNOG free text desc.cellular response to sterol depletion
EggNOG OGsKOG1933@1,KOG1933@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Hectar predicted targeting categorysignal anchor
Exons2
Model size237
Cds size237
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930837.6290545-CDS-H-elongata_contig51088:1247..13191622930837.6290545-CDS-H-elongata_contig51088:1247..1319Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51088 1248..1319 -
1691679591.68133-CDS-H-elongata_contig51088:1247..13191691679591.68133-CDS-H-elongata_contig51088:1247..1319Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51088 1248..1319 -
1622930837.646043-CDS-H-elongata_contig51088:1824..19891622930837.646043-CDS-H-elongata_contig51088:1824..1989Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51088 1825..1989 -
1691679591.6960287-CDS-H-elongata_contig51088:1824..19891691679591.6960287-CDS-H-elongata_contig51088:1824..1989Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig51088 1825..1989 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig51088.12370.1prot_H-elongata_contig51088.12370.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig51088 1248..1989 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig51088.12370.1

>prot_H-elongata_contig51088.12370.1 ID=prot_H-elongata_contig51088.12370.1|Name=mRNA_H-elongata_contig51088.12370.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=79bp
RLLNRYYLPVLFSNGGKFLTLAIAAGLAVLGVFGLSGLRMGLEPQLAAPT
DFYLQDYYEAQISLGEAGPPAYVVLTDVD
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mRNA from alignment at H-elongata_contig51088:1248..1989-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig51088.12370.1 ID=mRNA_H-elongata_contig51088.12370.1|Name=mRNA_H-elongata_contig51088.12370.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=742bp|location=Sequence derived from alignment at H-elongata_contig51088:1248..1989- (Himanthalia elongata Himel1 dioecious)
AGGTTGTTGAACCGCTATTACCTCCCGGTGTTATTCTCGAACGGAGGAAA GTTCCTCACTCTAGCGATAGCGGCTGGACTCGCCGTCCTGGGGGTCTTCG GCTTGTCCGGGCTGCGGATGGGACTCGAGCCGCAGCTCGCCGCTCCCACA GACTTCTACCTCCAGGTAAGCCTAACTTGCACTATAGGCAGCACTATAGG CAGCACATCTTGCATAGCACATTTTAGCAGTGGTTCAGCAATGGCCGTTA GTCTATAGGCTTTAGGTGTCTGTGTATGTGTATGTGTCTTTTCATAGGCC GACCGTTTTAAGGAGGTTGGTGGAGGATGGTGGAGCGTGTCTAATCAACT CGCGCCGGTCGAGCCCTACCACTGCCTATTGCCCATTGCATGCCTGGGAG TAAATCAAGAACATCGCTGTGACATAGCTCGATGTCCGCAGTGGACGTTT AAGGTAGTGGGTGAGTTTCCTGGAGTCACATCGACTATGGTATAAGATCG TATAATATGGTATAATATGGTACAGTACAAGCTGATGATACTGACCCCAT TACACCGCGGGGCCAACATCAAATCAAATCAGAAGTTGACAGCGGTGGTG AAATCAAGCCGCACTGTCGATCTCATCCCATCCCATGTAATTCCATATAA TTTCATCCACCGGTTTGCAGGACTACTATGAGGCGCAGATTTCCCTGGGA GAGGCGGGGCCTCCGGCATACGTGGTTCTCACCGACGTAGAC
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Coding sequence (CDS) from alignment at H-elongata_contig51088:1248..1989-

>mRNA_H-elongata_contig51088.12370.1 ID=mRNA_H-elongata_contig51088.12370.1|Name=mRNA_H-elongata_contig51088.12370.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=474bp|location=Sequence derived from alignment at H-elongata_contig51088:1248..1989- (Himanthalia elongata Himel1 dioecious)
AGGTTGTTGAACCGCTATTACCTCCCGGTGTTATTCTCGAACGGAGGAAA
GTTCCTCACTCTAGCGATAGCGGCTGGACTCGCCGTCCTGGGGGTCTTCG
GCTTGTCCGGGCTGCGGATGGGACTCGAGCCGCAGCTCGCCGCTCCCACA
GACTTCTACCTCCAGAGGTTGTTGAACCGCTATTACCTCCCGGTGTTATT
CTCGAACGGAGGAAAGTTCCTCACTCTAGCGATAGCGGCTGGACTCGCCG
TCCTGGGGGTCTTCGGCTTGTCCGGGCTGCGGATGGGACTCGAGCCGCAG
CTCGCCGCTCCCACAGACTTCTACCTCCAGGACTACTATGAGGCGCAGAT
TTCCCTGGGAGAGGCGGGGCCTCCGGCATACGTGGTTCTCACCGACGTAG
ACGACTACTATGAGGCGCAGATTTCCCTGGGAGAGGCGGGGCCTCCGGCA
TACGTGGTTCTCACCGACGTAGAC
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