mRNA_H-elongata_contig50980.12357.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig50980.12357.1
Unique NamemRNA_H-elongata_contig50980.12357.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50980.12357.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig50980contigH-elongata_contig50980:3353..3962 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size610
Cds size405
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig50980.12357.1prot_H-elongata_contig50980.12357.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig50980 3443..3847 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930836.092003-UTR-H-elongata_contig50980:3352..34421622930836.092003-UTR-H-elongata_contig50980:3352..3442Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig50980 3353..3442 +
1691679591.1512103-UTR-H-elongata_contig50980:3352..34421691679591.1512103-UTR-H-elongata_contig50980:3352..3442Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig50980 3353..3442 +
1622930836.1307092-UTR-H-elongata_contig50980:3847..39621622930836.1307092-UTR-H-elongata_contig50980:3847..3962Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig50980 3848..3962 +
1691679591.1683998-UTR-H-elongata_contig50980:3847..39621691679591.1683998-UTR-H-elongata_contig50980:3847..3962Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig50980 3848..3962 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930836.1114557-CDS-H-elongata_contig50980:3442..38471622930836.1114557-CDS-H-elongata_contig50980:3442..3847Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50980 3443..3847 +
1691679591.1587915-CDS-H-elongata_contig50980:3442..38471691679591.1587915-CDS-H-elongata_contig50980:3442..3847Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50980 3443..3847 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig50980.12357.1

>prot_H-elongata_contig50980.12357.1 ID=prot_H-elongata_contig50980.12357.1|Name=mRNA_H-elongata_contig50980.12357.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=135bp
MAPVAAARSVEATMGHAGTGAEAVAVTTMPELAAAVANPKVAGIASRDTP
ATHPVALRDGVGGIEAEVPAPTVANVAAMVTAVAMMIVPQATRICQIGNC
TEGPGGRVVAVVRRGCVSTASRIGQSNVSRDSSP*
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mRNA from alignment at H-elongata_contig50980:3353..3962+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig50980.12357.1 ID=mRNA_H-elongata_contig50980.12357.1|Name=mRNA_H-elongata_contig50980.12357.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=610bp|location=Sequence derived from alignment at H-elongata_contig50980:3353..3962+ (Himanthalia elongata Himel1 dioecious)
TTCGTGGCGGCTGACGCGGCGACAGGCGTTGCAGAGGAATGAGCTGAAGG
GAGCCTCGCGCTACCAGTACATACCGAAGGCGAGGAACCGATGGCACCGG
TAGCAGCGGCACGATCAGTGGAAGCGACGATGGGACATGCAGGGACTGGC
GCGGAAGCGGTTGCAGTGACCACGATGCCGGAGCTGGCCGCCGCTGTTGC
GAATCCGAAGGTGGCAGGAATTGCGAGTAGGGATACACCGGCCACCCACC
CCGTAGCGTTGAGGGATGGGGTGGGAGGAATCGAGGCGGAAGTACCCGCC
CCGACAGTGGCGAATGTGGCAGCGATGGTAACGGCAGTAGCGATGATGAT
CGTCCCACAAGCGACGAGAATCTGCCAGATCGGAAACTGTACGGAGGGTC
CCGGAGGGAGAGTTGTAGCGGTAGTACGGCGCGGTTGCGTAAGCACCGCA
AGTAGGATAGGTCAATCCAACGTCTCCAGGGATAGCTCCCCATAAGGGGG
GAGTATTCGCAAACCGGCGTGGCGCCCCCTTACATATCATGCCGGTTTGC
GCGGTTTAATGTAAGTTGATAAAGCCAGCTCTCTATAATATACAATATAC
TATTAACGAG
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Coding sequence (CDS) from alignment at H-elongata_contig50980:3353..3962+

>mRNA_H-elongata_contig50980.12357.1 ID=mRNA_H-elongata_contig50980.12357.1|Name=mRNA_H-elongata_contig50980.12357.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=810bp|location=Sequence derived from alignment at H-elongata_contig50980:3353..3962+ (Himanthalia elongata Himel1 dioecious)
ATGGCACCGGTAGCAGCGGCACGATCAGTGGAAGCGACGATGGGACATGC
AGGGACTGGCGCGGAAGCGGTTGCAGTGACCACGATGCCGGAGCTGGCCG
CCGCTGTTGCGAATCCGAAGGTGGCAGGAATTGCGAGTAGGGATACACCG
GCCACCCACCCCGTAGCGTTGAGGGATGGGGTGGGAGGAATCGAGGCGGA
AGTACCCGCCCCGACAGTGGCGAATGTGGCAGCGATGGTAACGGCAGTAG
CGATGATGATCGTCCCACAAGCGACGAGAATCTGCCAGATCGGAAACTGT
ACGGAGGGTCCCGGAGGGAGAGTTGTAGCGGTAGTACGGCGCGGTTGCGT
AAGCACCGCAAGTAGGATAGGTCAATCCAACGTCTCCAGGGATAGCTCCC
CATAAATGGCACCGGTAGCAGCGGCACGATCAGTGGAAGCGACGATGGGA
CATGCAGGGACTGGCGCGGAAGCGGTTGCAGTGACCACGATGCCGGAGCT
GGCCGCCGCTGTTGCGAATCCGAAGGTGGCAGGAATTGCGAGTAGGGATA
CACCGGCCACCCACCCCGTAGCGTTGAGGGATGGGGTGGGAGGAATCGAG
GCGGAAGTACCCGCCCCGACAGTGGCGAATGTGGCAGCGATGGTAACGGC
AGTAGCGATGATGATCGTCCCACAAGCGACGAGAATCTGCCAGATCGGAA
ACTGTACGGAGGGTCCCGGAGGGAGAGTTGTAGCGGTAGTACGGCGCGGT
TGCGTAAGCACCGCAAGTAGGATAGGTCAATCCAACGTCTCCAGGGATAG
CTCCCCATAA
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