mRNA_H-elongata_contig50972.12355.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig50972.12355.1 vs. uniprot
Match: A0A6G7NUH2_SACJA (Nuf2p n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A6G7NUH2_SACJA) HSP 1 Score: 203 bits (516), Expect = 1.230e-59 Identity = 144/227 (63.44%), Postives = 175/227 (77.09%), Query Frame = 1
Query: 1 QEHVAQVSMIFEKLVDTATGVTKEDMSQPAFAALSVLSYPDIHEENIAFMALFRAVCKMMKISRIDDFSLKDMSEPKPKRLIRQLSAVINFVRFREGKEHMYREAMAKKRAVREKAKAAQLRHSEVVEELEDLQDKMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQAALKQAEVEKGRLQGQVVTSPQRILREVADQQQALDQ 681
++H +QV M+FEKLV+T GVTKE+MSQPAFA L LS P++H++NI F+ALFR VCKMMKIS+IDDF+LKDMS+P RL RQLSA INFVRFRE K+ MY+E +A+K++V +KA++LR+ ++ ++L+D+Q +M XXXXXXXXXXXXXXXXXXXXXXXXXXX AALKQAEVEK RLQGQVV SPQRILREVADQQQALDQ
Sbjct: 39 KQHASQVVMVFEKLVETTMGVTKEEMSQPAFAGLGCLSNPELHDDNITFLALFRNVCKMMKISKIDDFALKDMSDPTRPRLRRQLSAAINFVRFREEKDVMYQEWLARKKSVAAASKASKLRNIKLADDLDDVQSRMAEKKKAIEDIXXXXXXXXXXXXXXXXXXXXXXXXXXXLKKANFAAKDKVASSMAALKQAEVEKERLQGQVVNSPQRILREVADQQQALDQ 265
BLAST of mRNA_H-elongata_contig50972.12355.1 vs. uniprot
Match: D8LMS3_ECTSI (Centromere-associated protein NUF2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMS3_ECTSI) HSP 1 Score: 171 bits (432), Expect = 3.270e-47 Identity = 136/227 (59.91%), Postives = 169/227 (74.45%), Query Frame = 1
Query: 1 QEHVAQVSMIFEKLVDTATGVTKEDMSQPAFAALSVLSYPDIHEENIAFMALFRAVCKMMKISRIDDFSLKDMSEPKPKRLIRQLSAVINFVRFREGKEHMYREAMAKKRAVREKAKAAQLRHSEVVEELEDLQDKMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQAALKQAEVEKGRLQGQVVTSPQRILREVADQQQALDQ 681
++HV Q++M+FE+LV+T GVTKE+MSQP FA L L+YP++H+E+IAF+ALFR VC+MM+ISRI+DF+LKDMS+P KRL RQLSAVINFVRF+EGKEH+Y +AMAKK+ + ++ EE ED+QD+M XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LQ QVV+SP+RILREV+D QQ+L+Q
Sbjct: 39 KDHVPQLTMLFERLVETTLGVTKEEMSQPVFAGLGCLTYPELHDESIAFLALFRNVCRMMRISRIEDFALKDMSDPNQKRLRRQLSAVINFVRFKEGKEHLYLDAMAKKQRLAAXXXXXXXXXXKLQEEHEDIQDRMAEKNKAIEAVNAKHEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLQAQVVSSPKRILREVSDLQQSLEQ 265
BLAST of mRNA_H-elongata_contig50972.12355.1 vs. uniprot
Match: A0A835ZCC3_9STRA (Nuf2 family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCC3_9STRA) HSP 1 Score: 118 bits (296), Expect = 1.640e-27 Identity = 78/227 (34.36%), Postives = 111/227 (48.90%), Query Frame = 1
Query: 1 QEHVAQVSMIFEKLVDTATGVTKEDMSQPAFAALSVLSYPDIHEENIAFMALFRAVCKMMKISRIDDFSLKDMSEPKPKRLIRQLSAVINFVRFREGKEHMYREAMAKKRAVREKAKAAQLRHSEVVEELEDLQDKMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQAALKQAEVEKGRLQGQVVTSPQRILREVADQQQALDQ 681
Q++V +V +F KLV+ GVT+E+M+QP FA L+VL+Y +HE+++ +A FRAV KMM S + DFS D+ P RL RQLSAVINF FREG+ +Y +K + +A + + EL L ++ K+A +E+ RLQ Q+V+SP RI RE+ADQQ AL+Q
Sbjct: 48 QKNVQEVQNVFAKLVEFTMGVTREEMNQPVFAGLNVLNYAQLHEDSVPELAFFRAVSKMMTASCVHDFSFNDLQTPNKTRLKRQLSAVINFCMFREGRMQVYNALATEKENLLANVQALGEDNERLERELASLTERTSQEAAETEMVEADCRAMEAQISALNREQAATRAQSGDLKRQANGLKDRLAALDLETKEAIMERERLQAQIVSSPDRIRREMADQQAALEQ 274
BLAST of mRNA_H-elongata_contig50972.12355.1 vs. uniprot
Match: W7TPN5_9STRA (Kinetochore protein Nuf2 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TPN5_9STRA) HSP 1 Score: 112 bits (280), Expect = 4.050e-25 Identity = 70/218 (32.11%), Postives = 109/218 (50.00%), Query Frame = 1
Query: 4 EHVAQVSMIFEKLVDTATGVTKEDMSQPAFAALSVLSYPDIHEENIAFMALFRAVCKMMKISRIDDFSLKDMSEPKPKRLIRQLSAVINFVRFREGKEHMYREAMAKKRAVREKAKAAQLRHSEVVEELEDLQDKMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQAALKQAEVEKGRLQGQVVTSPQRILREVA 657
+H + +E LV+ TG+TKE+MSQPAF+ ++ L+YP++HEE+I +A FRA KMM + + DFS+KD+ P+PKR+ R LSA+INF +FRE + MY E K+ + + K Q V +EL L+++ +AL+ E+ + +GQ+V SP+R+ RE+A
Sbjct: 69 KHRDAIRRAYEYLVEICTGITKEEMSQPAFSGINALNYPELHEESIPELAFFRACTKMMTVCGVHDFSMKDLLSPEPKRVRRHLSAIINFAKFREERLVMYSELAVKRDELLDNLKRLQDEEVGVAKELGVLREQAAAESEEMEGLEQACEVAEAELEQLNKRQAEIRAQGAELKKQSQDLKESIGKASSALESGIEEREKTRGQIVRSPERVRRELA 286
BLAST of mRNA_H-elongata_contig50972.12355.1 vs. uniprot
Match: A0A4D9D8Z4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D8Z4_9STRA) HSP 1 Score: 112 bits (280), Expect = 8.070e-25 Identity = 70/218 (32.11%), Postives = 109/218 (50.00%), Query Frame = 1
Query: 4 EHVAQVSMIFEKLVDTATGVTKEDMSQPAFAALSVLSYPDIHEENIAFMALFRAVCKMMKISRIDDFSLKDMSEPKPKRLIRQLSAVINFVRFREGKEHMYREAMAKKRAVREKAKAAQLRHSEVVEELEDLQDKMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQAALKQAEVEKGRLQGQVVTSPQRILREVA 657
+H + +E LV+ TG+TKE+MSQPAF+ ++ L+YP++HEE+I +A FRA KMM + + DFS+KD+ P+PKR+ R LSA+INF +FRE + MY E K+ + + K Q V +EL L+++ +AL+ E+ + +GQ+V SP+R+ RE+A
Sbjct: 723 KHRDAIRRAYEYLVEICTGITKEEMSQPAFSGINALNYPELHEESIPELAFFRACTKMMTVCGVHDFSMKDLLSPEPKRVRRHLSAIINFAKFREERLVMYSELAVKRDELLDNLKRLQDEEVGVAKELGVLREQAAAEREEMEGLEQACEVAEAELEQLNKRQAEIRAQGAELKKQSQDLKESIGKASSALESGIEEREKTRGQIVRSPERVRRELA 940
BLAST of mRNA_H-elongata_contig50972.12355.1 vs. uniprot
Match: A0A2D4C6D6_PYTIN (Uncharacterized protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C6D6_PYTIN) HSP 1 Score: 98.2 bits (243), Expect = 3.850e-20 Identity = 46/93 (49.46%), Postives = 67/93 (72.04%), Query Frame = 1
Query: 10 VAQVSMIFEKLVDTATGVTKEDMSQPAFAALSVLSYPDIHEENIAFMALFRAVCKMMKISRIDDFSLKDMSEPKPKRLIRQLSAVINFVRFRE 288
VA + + E ++T GV++E+M+QP FA LSVLSYP++HE++I + FR K+M+ I DFS+KD+ P PKR+ RQLSA+INF +FR+
Sbjct: 58 VAAIRKVLEVFIETTMGVSREEMNQPQFAGLSVLSYPELHEDSIPELTFFRQASKLMQACGIYDFSMKDVLTPNPKRVRRQLSALINFAKFRD 150
BLAST of mRNA_H-elongata_contig50972.12355.1 vs. uniprot
Match: A0A2V0P211_9CHLO (Uncharacterized protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P211_9CHLO) HSP 1 Score: 97.8 bits (242), Expect = 6.100e-20 Identity = 52/130 (40.00%), Postives = 80/130 (61.54%), Query Frame = 1
Query: 19 VSMIFEKLVDTATGVTKEDMSQPAFAALSVLSYPDIHEENIAFMALFRAVCKMMKISRIDDFSLKDMSEPKPKRLIRQLSAVINFVRFREGKEHMYREAMAK-------KRAVREKAKAAQLRHSEVVEE 387
V IFE ++ TG+T+ED++QP FAA+ YP++H+E+IA + F + ++M + + DF +KD+ +P P RL R LSA+INF +FRE K Y E A+ KRA+RE+ +A + + EE
Sbjct: 38 VGPIFENILVNLTGITREDLNQPVFAAIDAFEYPELHDESIAARSFFAQLSRLMAVCGVKDFGMKDVHKPDPARLRRHLSAIINFAKFREEKLVAYAELQARLESLAEQKRALREEQEARECELQRLQEE 167
BLAST of mRNA_H-elongata_contig50972.12355.1 vs. uniprot
Match: A0A8K1C789_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C789_PYTOL) HSP 1 Score: 95.5 bits (236), Expect = 3.120e-19 Identity = 46/93 (49.46%), Postives = 64/93 (68.82%), Query Frame = 1
Query: 10 VAQVSMIFEKLVDTATGVTKEDMSQPAFAALSVLSYPDIHEENIAFMALFRAVCKMMKISRIDDFSLKDMSEPKPKRLIRQLSAVINFVRFRE 288
VA + IFE ++ GV +E+M+QP FA LSVLSYP++HE++I + FR K+M + DF LKD+ P PKR+ RQLSA+INF +FR+
Sbjct: 41 VAAIRKIFEVFIENIMGVGREEMNQPQFAGLSVLSYPELHEDSIPEITFFRQATKLMNACGVYDFGLKDVLTPNPKRVRRQLSALINFAKFRD 133
BLAST of mRNA_H-elongata_contig50972.12355.1 vs. uniprot
Match: A0A2K1JPN4_PHYPA (Uncharacterized protein n=3 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JPN4_PHYPA) HSP 1 Score: 95.5 bits (236), Expect = 3.260e-19 Identity = 43/104 (41.35%), Postives = 72/104 (69.23%), Query Frame = 1
Query: 1 QEHVAQVSM-----IFEKLVDTATGVTKEDMSQPAFAALSVLSYPDIHEENIAFMALFRAVCKMMKISRIDDFSLKDMSEPKPKRLIRQLSAVINFVRFREGKE 297
++H+ + SM ++E LV G+T+E++ QPAF A+ L YP++HEE++ +A RA+ K+M ++ +DDFS D+ +P+ KR I LSA+IN ++F++GKE
Sbjct: 27 EQHLVKPSMETVWPVYESLVLNIMGITREELQQPAFHAIEKLEYPELHEESVGILASIRAISKLMAVTGVDDFSTMDIFKPESKRTITHLSAIINLLKFKQGKE 130
BLAST of mRNA_H-elongata_contig50972.12355.1 vs. uniprot
Match: F0WBG7_9STRA (Kinetochore protein NUF2like protein putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WBG7_9STRA) HSP 1 Score: 95.5 bits (236), Expect = 3.500e-19 Identity = 44/90 (48.89%), Postives = 63/90 (70.00%), Query Frame = 1
Query: 19 VSMIFEKLVDTATGVTKEDMSQPAFAALSVLSYPDIHEENIAFMALFRAVCKMMKISRIDDFSLKDMSEPKPKRLIRQLSAVINFVRFRE 288
+ IFE ++T G++KE+MSQPAF+ L L +P++HEE+I + FR + K+M I DF+ +D+ P PKRL RQLSA+INF +FRE
Sbjct: 62 IRKIFEVFIETIMGISKEEMSQPAFSGLRALDFPELHEESIPELTFFRTISKLMGYCGIYDFNFRDLLHPSPKRLRRQLSALINFAKFRE 151 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50972.12355.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig50972.12355.1 >prot_H-elongata_contig50972.12355.1 ID=prot_H-elongata_contig50972.12355.1|Name=mRNA_H-elongata_contig50972.12355.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=219bp MIFEKLVDTATGVTKEDMSQPAFAALSVLSYPDIHEENIAFMALFRAVCKback to top mRNA from alignment at H-elongata_contig50972:1363..3629+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig50972.12355.1 ID=mRNA_H-elongata_contig50972.12355.1|Name=mRNA_H-elongata_contig50972.12355.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2267bp|location=Sequence derived from alignment at H-elongata_contig50972:1363..3629+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig50972:1363..3629+ >mRNA_H-elongata_contig50972.12355.1 ID=mRNA_H-elongata_contig50972.12355.1|Name=mRNA_H-elongata_contig50972.12355.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1314bp|location=Sequence derived from alignment at H-elongata_contig50972:1363..3629+ (Himanthalia elongata Himel1 dioecious)back to top |