mRNA_H-elongata_contig50947.12354.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig50947.12354.1
Unique NamemRNA_H-elongata_contig50947.12354.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig50947.12354.1 vs. uniprot
Match: D7G403_ECTSI (UDENN domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G403_ECTSI)

HSP 1 Score: 151 bits (381), Expect = 5.040e-36
Identity = 88/148 (59.46%), Postives = 104/148 (70.27%), Query Frame = 1 
Query:    1 GGPAAGGHGERLRNCIRRFQLEKHMSESHVRETFDLLCENLQSEAELQVLLGLLPESKGGVGILALGLLSKNNSVRRSTVTFFKRLESFDSTRPAVRCMNDFFKLSLNRQAQEL------SANSSDPAANSAGACFGNEVGARHSVPA 426
            GG AA G G  LRNCIRR QLEK + E    + F+LL E L +EAELQVLLGLLPESK G G+LALGLLS++ S RRSTV  FK+LESF+STRPAV CMNDFFKL+L+RQAQEL      +A S+  A ++     G  V  R S+ A
Sbjct:  492 GGAAACGRGVELRNCIRRIQLEKFVGEEVAAKAFELLSECLDTEAELQVLLGLLPESKRGAGLLALGLLSRSASTRRSTVVLFKKLESFESTRPAVLCMNDFFKLALSRQAQELESAPPETATSASAAGSAVVGLGGGGVPKRRSIRA 639
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BLAST of mRNA_H-elongata_contig50947.12354.1 vs. uniprot
Match: A0A836CED8_9STRA (Docking domain of Afi1 for Arf3 in vesicle trafficking-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CED8_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 2.760e-12
Identity = 47/108 (43.52%), Postives = 65/108 (60.19%), Query Frame = 1 
Query:   10 AAGGHGERLRNCIRRFQLEKH--MSESHVRETFDLLCENLQSEAELQVLLGLLPESKGGVGILALGLLSKNNSVRRSTVTFFKRLESFDSTRPAVRCMNDFFKLSLNR 327
            A G  G +LR  +RR  L     + +  V+E F  L   LQSEA LQVLLGL+PESKGG+ +L  GL+  +  VR   ++  +RL +F+STRPA+  MND   ++  R
Sbjct:  861 AGGISGAQLRRHVRRLTLADGGGLDDQEVKEIFRDLDTALQSEASLQVLLGLMPESKGGIFVLGCGLMHGSAEVRAHALSLHRRLNAFESTRPAIYAMNDLLAMTYMR 968
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50947.12354.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G403_ECTSI5.040e-3659.46UDENN domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A836CED8_9STRA2.760e-1243.52Docking domain of Afi1 for Arf3 in vesicle traffic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig50947contigH-elongata_contig50947:599..3146 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score121.7
Seed ortholog evalue2.3e-25
Seed eggNOG ortholog2880.D7G403
GOsGO:0000278,GO:0000281,GO:0000282,GO:0000910,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005886,GO:0005933,GO:0005935,GO:0007049,GO:0007163,GO:0008150,GO:0009987,GO:0016020,GO:0022402,GO:0030010,GO:0030427,GO:0030447,GO:0030448,GO:0040007,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0051179,GO:0051301,GO:0051641,GO:0051666,GO:0061640,GO:0071944,GO:1903047
EggNOG free text desc.actin cortical patch localization
EggNOG OGs2CMMJ@1,2QQUZ@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionArf3-interacting protein 1, N-terminal domain
Ec32 orthologEc-19_000610.1
Exons4
Model size1430
Cds size357
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig50947.12354.1prot_H-elongata_contig50947.12354.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig50947 1626..3074 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930835.6069508-UTR-H-elongata_contig50947:598..8151622930835.6069508-UTR-H-elongata_contig50947:598..815Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig50947 599..815 -
1691679590.9874818-UTR-H-elongata_contig50947:598..8151691679590.9874818-UTR-H-elongata_contig50947:598..815Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig50947 599..815 -
1622930835.620811-UTR-H-elongata_contig50947:841..16251622930835.620811-UTR-H-elongata_contig50947:841..1625Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig50947 842..1625 -
1691679590.9992628-UTR-H-elongata_contig50947:841..16251691679590.9992628-UTR-H-elongata_contig50947:841..1625Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig50947 842..1625 -
1622930835.6790223-UTR-H-elongata_contig50947:3074..31461622930835.6790223-UTR-H-elongata_contig50947:3074..3146Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig50947 3075..3146 -
1691679591.03918-UTR-H-elongata_contig50947:3074..31461691679591.03918-UTR-H-elongata_contig50947:3074..3146Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig50947 3075..3146 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930835.6323187-CDS-H-elongata_contig50947:1625..18331622930835.6323187-CDS-H-elongata_contig50947:1625..1833Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50947 1626..1833 -
1691679591.0095162-CDS-H-elongata_contig50947:1625..18331691679591.0095162-CDS-H-elongata_contig50947:1625..1833Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50947 1626..1833 -
1622930835.6436663-CDS-H-elongata_contig50947:2127..22521622930835.6436663-CDS-H-elongata_contig50947:2127..2252Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50947 2128..2252 -
1691679591.0194473-CDS-H-elongata_contig50947:2127..22521691679591.0194473-CDS-H-elongata_contig50947:2127..2252Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50947 2128..2252 -
1622930835.6570613-CDS-H-elongata_contig50947:3050..30741622930835.6570613-CDS-H-elongata_contig50947:3050..3074Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50947 3051..3074 -
1691679591.0292413-CDS-H-elongata_contig50947:3050..30741691679591.0292413-CDS-H-elongata_contig50947:3050..3074Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50947 3051..3074 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig50947.12354.1

>prot_H-elongata_contig50947.12354.1 ID=prot_H-elongata_contig50947.12354.1|Name=mRNA_H-elongata_contig50947.12354.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=119bp
MSESHVRETFDLLCENLQSEAELQVLLGLLPESKGGVGILALGLLSKNNS
VRRSTVTFFKRLESFDSTRPAVRCMNDFFKLSLNRQAQELSANSSDPAAN
SAGACFGNEVGARHSVPA*
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mRNA from alignment at H-elongata_contig50947:599..3146-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig50947.12354.1 ID=mRNA_H-elongata_contig50947.12354.1|Name=mRNA_H-elongata_contig50947.12354.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2548bp|location=Sequence derived from alignment at H-elongata_contig50947:599..3146- (Himanthalia elongata Himel1 dioecious)
GGCGGACCGGCGGCTGGGGGTCACGGAGAGCGGTTGAGGAACTGCATCCG
AAGGTTTCAGCTGGAGAAACACATGAGCGAGAGTCACGTCAGAGAGGTAC
TGTATATATTGTTAGTGTTAGTAGGGAACGGGACTACTTCGATGTTATCT
GGCCATTCCATTCATCTCGTTGTCCTTGAATCAATCTTGGGGTCTCTCTA
AATCAGCCTGGGTGGTCTCCTCAGCCGATCTTTTGTCGCCTCGAATTTAG
CTTTAGCTTCCCTCAGCCCCGATCTTGGTTCCCATTTCTTCAGCTTCAGG
TCTCCCTTAAAATCATATTTATATGTATATATGTATATTTAATGGAGTTT
GTGAAATTCTCGAAATAAGAGAGGCGGATATTCGAGGGATAGTCGTATTC
GAAGACGAACTCTCGGTGATAGTCGCGTAAGCCCCCAGCAAGTGTACCTG
CAGCCTTGGAGATGGCAGAATTGACGGAATCAACGCTTCGCGGGGAGGCG
TGTTGGATATGCACGCCTGGATGTTAAGTCGCGCAGTTGCTAAATGCTGC
AGACATCGCCGAGCAAAGTCAGATTCGACACCACAGAGTTTCCGGGTTGG
ACCAACCTTCATGCTTACTCTCTGCCAAGGCGCTAGCCAGCAGCGGGCTG
ACTTTTGAGTGACTTGAGATGCAGCAAGCTTTACTGAAAAAAAAAGCAAT
TCGCTTCAAGATGAAGACGCTGCATGGCTGCGCTAGAGAGGGAGGTGGGG
TGGGGGATAGGCATGAATGTAACCGTCAAGTGCATCGGCCGGCATCGTGT
AATAATGTTTCCCGTTGTTCATGTTTTCCGCTCTTTTGTGCGCGGTCGGT
TCTGTTCCCTGTTCCCGTTTTTTTCTCTCCTTGCATCACGGCAGACGTTT
GACTTGCTCTGCGAGAACCTCCAAAGCGAAGCCGAGCTTCAGGTGCTACT
GGGTCTGCTGCCGGAGTCGAAGGGGGGGGTCGGTATCTTAGCCCTGGGTC
TTCTCTCGAAGAACAACAGGCGCGTATCTTCGCCCCCTGATCCTCTCGTA
CACACGAGACTAGTCCCCCCGTGGTTATCAATCATCATCCTACGTGGAAG
ATATAACGATACACTGAATCGCCGACCTAACATGTGGCGCTAGCAGAGCG
CTAGGGTTTCTACGCATAAAAGGAGGGGGCGATCATACGGGTTCGTCGTT
CGCTCTTATCACCATCTAGATCACGTAAACTCCACCCACCGCCTGCTTCG
GAAAATCGCAGCACCGATCATTTCAACTTTTACCCTTGACCCTTCCGTCT
CTGGCCGTGGCAGCGTCCGAAGGAGCACCGTGACCTTCTTCAAAAGGCTG
GAGTCCTTCGACTCCACCAGACCGGCTGTACGATGCATGAACGACTTCTT
TAAGCTCTCGCTGAACCGGCAGGCTCAGGAGCTGAGCGCGAATTCATCTG
ACCCCGCAGCGAATTCGGCGGGCGCCTGCTTTGGCAATGAAGTAGGAGCT
CGGCATTCGGTTCCCGCCTAACGAAGAAAAGTAACCGTCCAGATGTAACC
CGTCTACCCTAAATTATCCGCGGTAATTTTTCCCGACACGTCGACATGGT
TTCTTAAGGAAAAGGGATGTATAAAGTGAAGGAAGGGTTCACTGTACCGA
GGTCATTGAAGCGTCACATTCATGCGCGCGCATCGGTGCCTGAAATTTCG
AGAATCGTTCGAGAATCGCGCGGTTGGGTGGAAGGCCGATTCCTCCGAAC
ACCGTTCGCCGTCGGGTTTTCGTAGCGCGGGGACATTTGGTGGAAGTGAT
GTACGACCCACTTGGGTACTGTTGTATGTTGTGCCCGAAGTGCCCTGTTC
GTTATGAATTTAACATTGTAATAACTTAGGTTTATAACTTAGGTTTATAT
TCGATTATCGCAACACAAACAAGAAGGGGGTATATATATAGCAGGTGGCA
AGGCCTTACACGAGAGACGGCGACGGGGTGTTTCTAACGCTCTTGAGCAC
GTTGGATGCAGCAACGAACCGGCGGTAAAAAACATAATTTTGATGTAACC
TGCTGCGCCACATGTGAAGAAGACGGCCAAGGAATCACAGCACGCCTGCG
CGTCGTAGATACTTTTAAAGCGGTTTGCGATGGGAAGAGCGCATGATCGC
TAGATTCCAGGAAGATTTTCCGCGCCCCGAGCTTACCAGCACCTCTTTCT
TTCCCATGCATAGGTTATCTGCGTGTTTTGTGCGATCAACGGACGGTTAA
GCGTTGAATGCCGCGAATCGAATGTCGCGTGGAACTCGCTGCTAATCTTT
CGGAACGTCCAATCGCCTCCACCGTCCCCTTGTCGTGACTGTGTTTTCGT
AGATAGGTGGTGATGGTGCGTCTGGTCAAACGTCAGTCTTGAGAATAGAG
TTACGCGTGGAACTGGGAATCGGATTTGATGTTTTATGGTTATGAGGATA
TTTTTGTCGAAAATGATCTGCGAATCTCAGCACAAAAATCGTTTCCTCAA
GGAGGGTCGGACGCCGGTGTTCCTAATTTCATTTTATTGTCGCAAGTT
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Coding sequence (CDS) from alignment at H-elongata_contig50947:599..3146-

>mRNA_H-elongata_contig50947.12354.1 ID=mRNA_H-elongata_contig50947.12354.1|Name=mRNA_H-elongata_contig50947.12354.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=714bp|location=Sequence derived from alignment at H-elongata_contig50947:599..3146- (Himanthalia elongata Himel1 dioecious)
ATGAGCGAGAGTCACGTCAGAGAGATGAGCGAGAGTCACGTCAGAGAGAC
GTTTGACTTGCTCTGCGAGAACCTCCAAAGCGAAGCCGAGCTTCAGGTGC
TACTGGGTCTGCTGCCGGAGTCGAAGGGGGGGGTCGGTATCTTAGCCCTG
GGTCTTCTCTCGAAGAACAACAGACGTTTGACTTGCTCTGCGAGAACCTC
CAAAGCGAAGCCGAGCTTCAGGTGCTACTGGGTCTGCTGCCGGAGTCGAA
GGGGGGGGTCGGTATCTTAGCCCTGGGTCTTCTCTCGAAGAACAACAGCG
TCCGAAGGAGCACCGTGACCTTCTTCAAAAGGCTGGAGTCCTTCGACTCC
ACCAGACCGGCTGTACGATGCATGAACGACTTCTTTAAGCTCTCGCTGAA
CCGGCAGGCTCAGGAGCTGAGCGCGAATTCATCTGACCCCGCAGCGAATT
CGGCGGGCGCCTGCTTTGGCAATGAAGTAGGAGCTCGGCATTCGGTTCCC
GCCTAACGTCCGAAGGAGCACCGTGACCTTCTTCAAAAGGCTGGAGTCCT
TCGACTCCACCAGACCGGCTGTACGATGCATGAACGACTTCTTTAAGCTC
TCGCTGAACCGGCAGGCTCAGGAGCTGAGCGCGAATTCATCTGACCCCGC
AGCGAATTCGGCGGGCGCCTGCTTTGGCAATGAAGTAGGAGCTCGGCATT
CGGTTCCCGCCTAA
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