mRNA_H-elongata_contig50859.12346.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig50859.12346.1 vs. uniprot
Match: D7FIP5_ECTSI (Uncharacterized protein ycf23 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIP5_ECTSI) HSP 1 Score: 450 bits (1157), Expect = 1.600e-154 Identity = 239/273 (87.55%), Postives = 258/273 (94.51%), Query Frame = 2
Query: 20 MKSTCFVLATTALSGTDSFCFSPPRMSGDVMAPFRAGKALKVISGLNKFDADLVSKVARAAVAGGGTHIDIACDPELVRVAKAVSNVPVCVSAVEPELFPACVAAGAEMVELGNFDCFYDQGLTFTAEDVLEMTRKTRALLPSVPLSVTVPHTLDLEEQVRLAEELEALGVDVIQTEGKYSLEPSKGGVQGAIERAAPTLAAAHAISRAVNIPVMAASGLSDVTAPMALAAGAQGVGVGSAVNKLNSEIGMVAVVRAIASAMGLPAPAAVKAP 838
M+STC + A ALS D+FCFSP RMSGDV+APF+AGKALKVISGLNKFDADLVSKVARAA AGGGTHIDIACDP+LVR AKAVSNVPVCVSAV+PELFPACV AGAEMVELGNFDCFYDQGLTF+AEDVLEMTRKTRALLP+ PLSVTVPHTLDL++QV LA ELE LGVDVIQTEGK+SL+PSKGG+QGAIERAAPTLAAAHAIS+AV+IPVMAASGLSDVTAPMALAAGA+GVGVGSAVNKLNSEIGMVAVVRAIASAMGLP P+AV+AP
Sbjct: 1 MRSTCVIAAAAALSCADAFCFSPARMSGDVLAPFQAGKALKVISGLNKFDADLVSKVARAAAAGGGTHIDIACDPDLVRAAKAVSNVPVCVSAVDPELFPACVDAGAEMVELGNFDCFYDQGLTFSAEDVLEMTRKTRALLPTTPLSVTVPHTLDLDDQVDLAVELEGLGVDVIQTEGKFSLDPSKGGIQGAIERAAPTLAAAHAISKAVSIPVMAASGLSDVTAPMALAAGARGVGVGSAVNKLNSEIGMVAVVRAIASAMGLPKPSAVEAP 273
BLAST of mRNA_H-elongata_contig50859.12346.1 vs. uniprot
Match: A0A835YK10_9STRA (Uncharacterized protein ycf23 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK10_9STRA) HSP 1 Score: 321 bits (823), Expect = 4.820e-104 Identity = 170/244 (69.67%), Postives = 206/244 (84.43%), Query Frame = 2
Query: 95 MSGDVMAPFRAGKALKVISGLNKFDADLVSKVARAAVAGGGTHIDIACDPELVRVAKAVS-NVPVCVSAVEPELFPACVAAGAEMVELGNFDCFYDQGLTFTAEDVLEMTRKTRALLPSVPLSVTVPHTLDLEEQVRLAEELEALGVDVIQTEGKYSLEPSKGGVQGAIERAAPTLAAAHAISRAVNIPVMAASGLSDVTAPMALAAGAQGVGVGSAVNKLNSEIGMVAVVRAIASAMGLPAPA 823
MSGD +APFRA KALK+ISG+ FD++LV KVA AA AGG TH+DIA DPELV++AK + +V +CVSA+EPEL CV AGA+MVELGNFD FYDQG+ FTA+DV+ MT+ TRALLP PLSVT+PH L +++QV LA+ L+ LGVDVIQTEGKYSL+PS GG+QG IERAAP LAA +AI+RAV+IPVM +SG+S+VTA MALAAGA GVGVGSAVNKLN+++ M+AVVRA+A AM LPAPA
Sbjct: 23 MSGDAIAPFRAHKALKIISGITNFDSELVRKVAVAAQAGGATHLDIAADPELVKLAKRTAPSVSICVSAIEPELLVPCVEAGADMVELGNFDMFYDQGMDFTADDVITMTKATRALLPKTPLSVTIPHKLHMDQQVTLAQALQELGVDVIQTEGKYSLDPSAGGLQGVIERAAPALAATYAIARAVDIPVMTSSGISEVTASMALAAGASGVGVGSAVNKLNAQVAMIAVVRALAIAMDLPAPA 266
BLAST of mRNA_H-elongata_contig50859.12346.1 vs. uniprot
Match: A0A1Y1HWD8_KLENI (Uncharacterized protein ycf23 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HWD8_KLENI) HSP 1 Score: 285 bits (730), Expect = 1.520e-89 Identity = 153/236 (64.83%), Postives = 190/236 (80.51%), Query Frame = 2
Query: 104 DVMAPFRAGKALKVISGLNKFDADLVSKVARAAVAGGGTHIDIACDPELVRVAKAVSNVPVCVSAVEPELFPACVAAGAEMVELGNFDCFYDQGLTFTAEDVLEMTRKTRALLPSVPLSVTVPHTLDLEEQVRLAEELEALGVDVIQTEGKYSLEPSKGGVQGAIERAAPTLAAAHAISRAVNIPVMAASGLSDVTAPMALAAGAQGVGVGSAVNKLNSEIGMVAVVRAIASAMGL 811
DV+ PF KA KVI+GL F+ + V+++ AA GG TH+DIACDPELV++A ++++VPVCVSAVEPELF VAAGA MVE+GN+D FY +G TF AE+VL +TR+TR LLP++PLSVTVPHTL L +QV LAE LE G D+IQTEG S P++ GV G IE+A+PTLAAA++ISRAV+IPVM ASG+SDVTA MA+AAGA GVGVGSA+NKLNS I M+A RAIA+A+GL
Sbjct: 67 DVLRPFAEKKAFKVIAGLKNFNRENVAEIVAAAEQGGATHVDIACDPELVKLACSLTSVPVCVSAVEPELFVPAVAAGATMVEIGNYDPFYAEGRTFDAEEVLALTRRTRQLLPTIPLSVTVPHTLPLPDQVHLAELLENAGADIIQTEGGVSSAPTQAGVAGMIEKASPTLAAAYSISRAVSIPVMCASGISDVTASMAIAAGAAGVGVGSAINKLNSGIAMIAATRAIANALGL 302
BLAST of mRNA_H-elongata_contig50859.12346.1 vs. uniprot
Match: U5DGR7_9CHRO (Pyruvate/oxaloacetate carboxyltransferase n=1 Tax=Rubidibacter lacunae KORDI 51-2 TaxID=582515 RepID=U5DGR7_9CHRO) HSP 1 Score: 280 bits (715), Expect = 3.070e-88 Identity = 149/233 (63.95%), Postives = 184/233 (78.97%), Query Frame = 2
Query: 107 VMAPFRAGKALKVISGLNKFDADLVSKVARAAVAGGGTHIDIACDPELVRVAKAVSNVPVCVSAVEPELFPACVAAGAEMVELGNFDCFYDQGLTFTAEDVLEMTRKTRALLPSVPLSVTVPHTLDLEEQVRLAEELEALGVDVIQTEGKYSLEPSKGGVQGAIERAAPTLAAAHAISRAVNIPVMAASGLSDVTAPMALAAGAQGVGVGSAVNKLNSEIGMVAVVRAIASAM 805
+ A F ALK+ISGLN F+ D V+ VARAA AGG T +DIA PELVR A+ ++P+C SAVEPE F A VAAGA+++E+GNFDCFY QG F AE+VL +TR TRALLP V LSVTVPH L L+ QV+LAE+L G DVIQTEG S +P+ GGV GAIE+AAPTLAAAH ISRAV++PV+ ASGL+DVTAP+A+AAGA G+GVGSAVN+LNS++ MVA VR++ +A+
Sbjct: 6 LQAAFARRNALKIISGLNNFNGDRVAAVARAAAAGGATFVDIAASPELVRRARQACDLPICTSAVEPEAFVAAVAAGADLIEIGNFDCFYAQGRRFEAEEVLALTRATRALLPQVMLSVTVPHVLPLDAQVQLAEDLVRAGADVIQTEGGTSSQPAHGGVLGAIEKAAPTLAAAHCISRAVDVPVLCASGLTDVTAPLAIAAGAAGIGVGSAVNRLNSKVAMVAAVRSLVAAL 238
BLAST of mRNA_H-elongata_contig50859.12346.1 vs. uniprot
Match: A0A3M9ZCT6_9CYAN (DUF561 domain-containing protein n=2 Tax=Pseudanabaenales TaxID=2881377 RepID=A0A3M9ZCT6_9CYAN) HSP 1 Score: 273 bits (698), Expect = 1.060e-85 Identity = 145/226 (64.16%), Postives = 183/226 (80.97%), Query Frame = 2
Query: 134 ALKVISGLNKFDADLVSKVARAAVAGGGTHIDIACDPELVRVAKAVSNVPVCVSAVEPELFPACVAAGAEMVELGNFDCFYDQGLTFTAEDVLEMTRKTRALLPSVPLSVTVPHTLDLEEQVRLAEELEALGVDVIQTEGKYSLEPSKGGVQGAIERAAPTLAAAHAISRAVNIPVMAASGLSDVTAPMALAAGAQGVGVGSAVNKLNSEIGMVAVVRAIASAMGL 811
ALKVISGL FDA V+ V RAA GG T +DIA DP+LVR++K ++ +PVCVSAVEP+ F A VAAGA+++E+GNFD FY QG F A +VLE+TR+TRALLP++ LSVTVPH L+L++QV+LAEEL G D+IQTEG S +P+ G G IE+AAPTLAAAHAISRAV++PV+ ASGLSDVTAPMA+AAGA G+GVGSA+N+LN E+ MVAVVR++ A+ +
Sbjct: 16 ALKVISGLTNFDAVRVAAVVRAADRGGATFVDIAADPDLVRLSKQLTQLPVCVSAVEPQQFVAAVAAGADLIEIGNFDAFYAQGKRFEAAEVLELTRQTRALLPNIMLSVTVPHILELDQQVQLAEELVQAGADLIQTEGGTSSQPTHAGTLGLIEKAAPTLAAAHAISRAVSVPVLCASGLSDVTAPMAIAAGAAGIGVGSAINRLNDELAMVAVVRSLVEALAI 241
BLAST of mRNA_H-elongata_contig50859.12346.1 vs. uniprot
Match: L1K0A3_GUITC (Uncharacterized protein ycf23 n=2 Tax=Guillardia theta TaxID=55529 RepID=L1K0A3_GUITC) HSP 1 Score: 273 bits (698), Expect = 1.090e-85 Identity = 151/236 (63.98%), Postives = 183/236 (77.54%), Query Frame = 2
Query: 101 GDVMAPFRAGKALKVISGLNKFDADLVSKVARAAVAGGGTHIDIACDPELVRVAKAVSNVPVCVSAVEPELFPACVAAGAEMVELGNFDCFYDQGLTFTAEDVLEMTRKTRALL-PSVPLSVTVPHTLDLEEQVRLAEELEALGVDVIQTEGKYSLEPSKGGVQGAIERAAPTLAAAHAISRAVNIPVMAASGLSDVTAPMALAAGAQGVGVGSAVNKLNSEIGMVAVVRAIASAM 805
GDVM PF +ALK+ISGLN FD V+ V RAA AGG T +DIACDP+LV++A+++ NVPVCVS+V E F A V AGA MVE+GN+D FY QG F+AE+VL +T +TR +L S+P+SVTVPHTL L+EQV LA LEA G +IQTEG ++PS GG+QG IE+AAPTLAA AIS+AV IP MAASG+S +TAP+A+AAGA GVGVGSAVNKLNSEI M+A VR I AM
Sbjct: 4 GDVMLPFEQRRALKIISGLNNFDEKSVASVVRAANAGGATLVDIACDPKLVQLARSIGNVPVCVSSVVAEDFLAAVKAGANMVEIGNYDSFYAQGRKFSAEEVLAITERTRDILGSSIPVSVTVPHTLPLDEQVSLALALEAAGASIIQTEGGMPMKPSSGGIQGLIEKAAPTLAATAAISKAVEIPTMAASGISAITAPLAIAAGASGVGVGSAVNKLNSEIAMLAAVREIYEAM 239
BLAST of mRNA_H-elongata_contig50859.12346.1 vs. uniprot
Match: D8SUW3_SELML (Uncharacterized protein ycf23 n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8SUW3_SELML) HSP 1 Score: 274 bits (701), Expect = 2.220e-85 Identity = 144/229 (62.88%), Postives = 182/229 (79.48%), Query Frame = 2
Query: 125 AGKALKVISGLNKFDADLVSKVARAAVAGGGTHIDIACDPELVRVAKAVSNVPVCVSAVEPELFPACVAAGAEMVELGNFDCFYDQGLTFTAEDVLEMTRKTRALLPSVPLSVTVPHTLDLEEQVRLAEELEALGVDVIQTEGKYSLEPSKGGVQGAIERAAPTLAAAHAISRAVNIPVMAASGLSDVTAPMALAAGAQGVGVGSAVNKLNSEIGMVAVVRAIASAMGL 811
A +A KVI+GLN FD + V+ V AA GG TH+DIACDP+LV +A ++++P+CVSAV+PE F A V AGA M+E+GNFD FYD G F++++VLE+TR+TR LLP + LSVTVPHTL L+EQV+LAE LE G D+IQTEG + PSK G+ G IE+A PTLAAA++ISRA+ +PV+ ASGLS VTAPMA+ AGA GVG+GSAVNKLNS++ MVA VR+IA AMGL
Sbjct: 58 AKRAFKVIAGLNNFDRENVADVVVAAEKGGATHVDIACDPQLVELALGLTSLPICVSAVDPEAFVAAVDAGAHMIEIGNFDSFYDSGRVFSSKEVLELTRRTRELLPHITLSVTVPHTLPLDEQVQLAEALEEEGADIIQTEGGTASTPSKPGITGLIEKATPTLAAAYSISRAITLPVLCASGLSAVTAPMAITAGASGVGIGSAVNKLNSQLAMVATVRSIADAMGL 286
BLAST of mRNA_H-elongata_contig50859.12346.1 vs. uniprot
Match: A0A1E5QXG4_9CHRO (Uncharacterized protein n=2 Tax=unclassified Cyanobacterium TaxID=2629879 RepID=A0A1E5QXG4_9CHRO) HSP 1 Score: 272 bits (695), Expect = 2.980e-85 Identity = 144/225 (64.00%), Postives = 177/225 (78.67%), Query Frame = 2
Query: 131 KALKVISGLNKFDADLVSKVARAAVAGGGTHIDIACDPELVRVAKAVSNVPVCVSAVEPELFPACVAAGAEMVELGNFDCFYDQGLTFTAEDVLEMTRKTRALLPSVPLSVTVPHTLDLEEQVRLAEELEALGVDVIQTEGKYSLEPSKGGVQGAIERAAPTLAAAHAISRAVNIPVMAASGLSDVTAPMALAAGAQGVGVGSAVNKLNSEIGMVAVVRAIASAM 805
KALKVISGLN FD V V +AA GG T +DIA D E+++ K N+PVCVSAVEP+LF + V AGA+++E+GNFD FY QG+ F+AEDVL +TR+TRALLP++ LSVTVPHTL L EQV LA+ LEA G D+IQTEG S +P+ G+ G IE+A+PTLAAAHAIS+AV IPV+ ASGLSDVT PMA+A GA GVGVGSAVNKLN E+ M+AVVR++ A+
Sbjct: 14 KALKVISGLNNFDLANVKAVCKAAELGGATFVDIAADVEIIKAVKESINIPVCVSAVEPQLFVSAVEAGADLIEIGNFDSFYAQGINFSAEDVLNLTRQTRALLPNILLSVTVPHTLPLHEQVELAQALEAAGADIIQTEGGTSSKPNHSGILGLIEKASPTLAAAHAISKAVQIPVLCASGLSDVTVPMAIATGASGVGVGSAVNKLNDEVAMMAVVRSLVEAL 238
BLAST of mRNA_H-elongata_contig50859.12346.1 vs. uniprot
Match: A0A0D6ACD4_9CHRO (IMP dehydrogenase/GMP reductase n=1 Tax=Geminocystis sp. NIES-3708 TaxID=1615909 RepID=A0A0D6ACD4_9CHRO) HSP 1 Score: 271 bits (694), Expect = 4.350e-85 Identity = 144/229 (62.88%), Postives = 177/229 (77.29%), Query Frame = 2
Query: 119 FRAGKALKVISGLNKFDADLVSKVARAAVAGGGTHIDIACDPELVRVAKAVSNVPVCVSAVEPELFPACVAAGAEMVELGNFDCFYDQGLTFTAEDVLEMTRKTRALLPSVPLSVTVPHTLDLEEQVRLAEELEALGVDVIQTEGKYSLEPSKGGVQGAIERAAPTLAAAHAISRAVNIPVMAASGLSDVTAPMALAAGAQGVGVGSAVNKLNSEIGMVAVVRAIASAM 805
F KALKVISGLN FD D V V +AA GG T +DIA D L++ + + N+P+CVSAV+PEL V AGA++VE+GNFD FY QG+TFTAEDVL +TR+TRALLP++ LSVTVPHTL L+EQV LA+ L G D+IQTEG S P+ GV G IE+A+PTLA AHAISRAV +PVM ASGLSDVTAPMA++AGA G+GVGSAVNKLN +I M+AVVR++ ++
Sbjct: 11 FATKKALKVISGLNNFDVDNVVAVCKAAELGGATFVDIAADVNLIKTVRQLINLPICVSAVKPELLANAVEAGADLVEIGNFDSFYAQGITFTAEDVLRLTRETRALLPNITLSVTVPHTLPLDEQVELAQALVTQGADIIQTEGGTSSNPNHSGVLGLIEKASPTLATAHAISRAVEVPVMCASGLSDVTAPMAISAGADGIGVGSAVNKLNDQIAMIAVVRSLVESL 239
BLAST of mRNA_H-elongata_contig50859.12346.1 vs. uniprot
Match: UPI001882BC92 (DUF561 domain-containing protein n=1 Tax=Cyanobacterium stanieri TaxID=102235 RepID=UPI001882BC92) HSP 1 Score: 271 bits (693), Expect = 5.950e-85 Identity = 148/233 (63.52%), Postives = 180/233 (77.25%), Query Frame = 2
Query: 131 KALKVISGLNKFDADLVSKVARAAVAGGGTHIDIACDPELVRVAKAVSNVPVCVSAVEPELFPACVAAGAEMVELGNFDCFYDQGLTFTAEDVLEMTRKTRALLPSVPLSVTVPHTLDLEEQVRLAEELEALGVDVIQTEGKYSLEPSKGGVQGAIERAAPTLAAAHAISRAVNIPVMAASGLSDVTAPMALAAGAQGVGVGSAVNKLNSEIGMVAVVRAIASAMGLPAPAAV 829
KALKVISGLN FD V V RAA GG T +DIA D E+++ K ++PVCVSAVEP+LF + V AGA+++E+GNFD FY QG+ F+AEDVL +TR+TRALLP V LSVTVPHTL L+EQV LA++LEA G D+IQTEG S P+ G+ G IE+A+PTLAAAHAISRAV IPV+ ASGLSDVT PMA+A GA GVGVGSAVNKLN ++ M+AVVR++ A+ A AV
Sbjct: 14 KALKVISGLNNFDVANVVAVCRAAQLGGATFVDIAADVEIIKAVKESIDLPVCVSAVEPQLFVSAVEAGADLIEIGNFDSFYAQGINFSAEDVLSLTRQTRALLPHVLLSVTVPHTLPLDEQVELAQKLEAEGADIIQTEGGTSSNPNHSGILGLIEKASPTLAAAHAISRAVQIPVLCASGLSDVTVPMAIATGASGVGVGSAVNKLNDQVAMIAVVRSLVEALNRSASQAV 246 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50859.12346.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig50859.12346.1 >prot_H-elongata_contig50859.12346.1 ID=prot_H-elongata_contig50859.12346.1|Name=mRNA_H-elongata_contig50859.12346.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=283bp MKSTCFVLATTALSGTDSFCFSPPRMSGDVMAPFRAGKALKVISGLNKFDback to top mRNA from alignment at H-elongata_contig50859:329..3485+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig50859.12346.1 ID=mRNA_H-elongata_contig50859.12346.1|Name=mRNA_H-elongata_contig50859.12346.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3157bp|location=Sequence derived from alignment at H-elongata_contig50859:329..3485+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig50859:329..3485+ >mRNA_H-elongata_contig50859.12346.1 ID=mRNA_H-elongata_contig50859.12346.1|Name=mRNA_H-elongata_contig50859.12346.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1698bp|location=Sequence derived from alignment at H-elongata_contig50859:329..3485+ (Himanthalia elongata Himel1 dioecious)back to top |