mRNA_H-elongata_contig50857.12345.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig50857.12345.1
Unique NamemRNA_H-elongata_contig50857.12345.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig50857.12345.1 vs. uniprot
Match: D8LDN2_ECTSI (General transcription and DNA repair factor IIH helicase subunit XPD n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDN2_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 2.460e-22
Identity = 43/45 (95.56%), Postives = 44/45 (97.78%), Query Frame = 1 
Query:    1 MRFDLDGLDVFFPYEFMYPEQYDYMLELKRSLDAKGHCLLEMPTG 135
            MR DLDGLDVFFPY+FMYPEQYDYMLELKRSLDAKGHCLLEMPTG
Sbjct:    1 MRLDLDGLDVFFPYDFMYPEQYDYMLELKRSLDAKGHCLLEMPTG 45
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BLAST of mRNA_H-elongata_contig50857.12345.1 vs. uniprot
Match: A0A7R9TIP8_9VIRI (Hypothetical protein (Fragment) n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9TIP8_9VIRI)

HSP 1 Score: 89.0 bits (219), Expect = 3.470e-21
Identity = 36/45 (80.00%), Postives = 45/45 (100.00%), Query Frame = 1 
Query:    1 MRFDLDGLDVFFPYEFMYPEQYDYMLELKRSLDAKGHCLLEMPTG 135
            M+F+LDG+DV+FPY+++YPEQY+YMLELKR+LDAKGHCLLEMPTG
Sbjct:    1 MKFNLDGMDVYFPYDYIYPEQYEYMLELKRTLDAKGHCLLEMPTG 45
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BLAST of mRNA_H-elongata_contig50857.12345.1 vs. uniprot
Match: A0A835T392_CHLIN (Helicase ATP-binding domain-containing protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835T392_CHLIN)

HSP 1 Score: 85.1 bits (209), Expect = 6.390e-20
Identity = 36/45 (80.00%), Postives = 43/45 (95.56%), Query Frame = 1 
Query:    1 MRFDLDGLDVFFPYEFMYPEQYDYMLELKRSLDAKGHCLLEMPTG 135
            MRF+L+GL V+FPYE++YPEQY YMLELKR+LDA+GHCLLEMPTG
Sbjct:    1 MRFNLEGLTVYFPYEYIYPEQYRYMLELKRALDARGHCLLEMPTG 45
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BLAST of mRNA_H-elongata_contig50857.12345.1 vs. uniprot
Match: A0A250XN93_9CHLO (General transcription and DNA repair factor IIH helicase subunit XPD n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XN93_9CHLO)

HSP 1 Score: 89.0 bits (219), Expect = 1.710e-19
Identity = 38/45 (84.44%), Postives = 43/45 (95.56%), Query Frame = 1 
Query:    1 MRFDLDGLDVFFPYEFMYPEQYDYMLELKRSLDAKGHCLLEMPTG 135
            M+F L+GLDV+FPYEF+YPEQY YMLELKRSLDA+GHCLLEMPTG
Sbjct:    1 MKFKLEGLDVYFPYEFIYPEQYSYMLELKRSLDARGHCLLEMPTG 45
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BLAST of mRNA_H-elongata_contig50857.12345.1 vs. uniprot
Match: A0A7S1CWE2_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Picochlorum oklahomense TaxID=249345 RepID=A0A7S1CWE2_9CHLO)

HSP 1 Score: 83.6 bits (205), Expect = 4.060e-19
Identity = 35/45 (77.78%), Postives = 41/45 (91.11%), Query Frame = 1 
Query:    1 MRFDLDGLDVFFPYEFMYPEQYDYMLELKRSLDAKGHCLLEMPTG 135
            M+F L+GL VFFPYE++YPEQY YM+ELK +LDAKGHCLLEMPTG
Sbjct:    1 MKFQLEGLTVFFPYEYIYPEQYQYMVELKHALDAKGHCLLEMPTG 45
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BLAST of mRNA_H-elongata_contig50857.12345.1 vs. uniprot
Match: A0A6S7I8T9_PARCT (TFIIH basal transcription factor complex helicase XPD subunit (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7I8T9_PARCT)

HSP 1 Score: 80.1 bits (196), Expect = 6.490e-19
Identity = 33/45 (73.33%), Postives = 41/45 (91.11%), Query Frame = 1 
Query:    1 MRFDLDGLDVFFPYEFMYPEQYDYMLELKRSLDAKGHCLLEMPTG 135
            M+ ++DGL V+FPY+++YPEQY YM ELKRSLDAKGHCLLEMP+G
Sbjct:    1 MKLNIDGLLVYFPYDYIYPEQYSYMFELKRSLDAKGHCLLEMPSG 45
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BLAST of mRNA_H-elongata_contig50857.12345.1 vs. uniprot
Match: A0A7S2WST0_9STRA (General transcription and DNA repair factor IIH helicase subunit XPD n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WST0_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 8.100e-19
Identity = 39/45 (86.67%), Postives = 42/45 (93.33%), Query Frame = 1 
Query:    1 MRFDLDGLDVFFPYEFMYPEQYDYMLELKRSLDAKGHCLLEMPTG 135
            MRF+LDGLDVFFPY  +YPEQYDYMLELKR+LDAKG CLLEMPTG
Sbjct:    1 MRFNLDGLDVFFPYPTIYPEQYDYMLELKRALDAKGSCLLEMPTG 45
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BLAST of mRNA_H-elongata_contig50857.12345.1 vs. uniprot
Match: A0A835XSX7_9CHLO (Helicase ATP-binding domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XSX7_9CHLO)

HSP 1 Score: 85.1 bits (209), Expect = 8.720e-19
Identity = 36/45 (80.00%), Postives = 43/45 (95.56%), Query Frame = 1 
Query:    1 MRFDLDGLDVFFPYEFMYPEQYDYMLELKRSLDAKGHCLLEMPTG 135
            M+F+L+GL V+FPYE++YPEQY YMLELKRSLDA+GHCLLEMPTG
Sbjct:    1 MKFNLEGLTVYFPYEYIYPEQYRYMLELKRSLDARGHCLLEMPTG 45
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BLAST of mRNA_H-elongata_contig50857.12345.1 vs. uniprot
Match: A0A059LDS7_9CHLO (Helicase ATP-binding domain-containing protein (Fragment) n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LDS7_9CHLO)

HSP 1 Score: 80.9 bits (198), Expect = 1.210e-18
Identity = 34/45 (75.56%), Postives = 40/45 (88.89%), Query Frame = 1 
Query:    1 MRFDLDGLDVFFPYEFMYPEQYDYMLELKRSLDAKGHCLLEMPTG 135
            M+F L+GL V+FPYE++YPEQY YM ELK +LDAKGHCLLEMPTG
Sbjct:    1 MKFQLEGLTVYFPYEYIYPEQYKYMQELKHALDAKGHCLLEMPTG 45
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BLAST of mRNA_H-elongata_contig50857.12345.1 vs. uniprot
Match: K8YZX4_NANGC (General transcription and DNA repair factor IIH helicase subunit XPD (Fragment) n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YZX4_NANGC)

HSP 1 Score: 85.9 bits (211), Expect = 2.060e-18
Identity = 37/45 (82.22%), Postives = 43/45 (95.56%), Query Frame = 1 
Query:    1 MRFDLDGLDVFFPYEFMYPEQYDYMLELKRSLDAKGHCLLEMPTG 135
            +RFDLDGLD+FFPY+ +Y EQY+YMLELKR+LDAKGHCLLEMPTG
Sbjct:    2 VRFDLDGLDLFFPYDRLYEEQYNYMLELKRALDAKGHCLLEMPTG 46
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50857.12345.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDN2_ECTSI2.460e-2295.56General transcription and DNA repair factor IIH he... [more]
A0A7R9TIP8_9VIRI3.470e-2180.00Hypothetical protein (Fragment) n=1 Tax=Prasinoder... [more]
A0A835T392_CHLIN6.390e-2080.00Helicase ATP-binding domain-containing protein n=1... [more]
A0A250XN93_9CHLO1.710e-1984.44General transcription and DNA repair factor IIH he... [more]
A0A7S1CWE2_9CHLO4.060e-1977.78Hypothetical protein (Fragment) n=1 Tax=Picochloru... [more]
A0A6S7I8T9_PARCT6.490e-1973.33TFIIH basal transcription factor complex helicase ... [more]
A0A7S2WST0_9STRA8.100e-1986.67General transcription and DNA repair factor IIH he... [more]
A0A835XSX7_9CHLO8.720e-1980.00Helicase ATP-binding domain-containing protein n=1... [more]
A0A059LDS7_9CHLO1.210e-1875.56Helicase ATP-binding domain-containing protein (Fr... [more]
K8YZX4_NANGC2.060e-1882.22General transcription and DNA repair factor IIH he... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig50857contigH-elongata_contig50857:541..678 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.4
Seed ortholog evalue1.8e-18
Seed eggNOG ortholog2880.D8LDN2
Preferred nameERCC2
KEGG koko:K10844
KEGG Pathwayko03022,ko03420,map03022,map03420
KEGG ModuleM00290
GOsGO:0000018,GO:0000019,GO:0000109,GO:0000112,GO:0000166,GO:0000428,GO:0000439,GO:0000717,GO:0000988,GO:0000990,GO:0000991,GO:0001109,GO:0001111,GO:0001112,GO:0001113,GO:0001120,GO:0001503,GO:0001701,GO:0001942,GO:0002244,GO:0002262,GO:0002376,GO:0002520,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003684,GO:0003824,GO:0004003,GO:0004386,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0005675,GO:0005694,GO:0005700,GO:0005703,GO:0005705,GO:0005737,GO:0005819,GO:0005829,GO:0005856,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006293,GO:0006294,GO:0006296,GO:0006351,GO:0006352,GO:0006353,GO:0006354,GO:0006355,GO:0006357,GO:0006360,GO:0006361,GO:0006363,GO:0006366,GO:0006367,GO:0006368,GO:0006370,GO:0006396,GO:0006397,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006915,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007049,GO:0007059,GO:0007088,GO:0007272,GO:0007275,GO:0007346,GO:0007348,GO:0007399,GO:0007417,GO:0007568,GO:0008022,GO:0008026,GO:0008094,GO:0008144,GO:0008150,GO:0008152,GO:0008219,GO:0008283,GO:0008366,GO:0008544,GO:0009058,GO:0009059,GO:0009266,GO:0009314,GO:0009408,GO:0009411,GO:0009416,GO:0009452,GO:0009628,GO:0009650,GO:0009653,GO:0009790,GO:0009791,GO:0009792,GO:0009794,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009913,GO:0009987,GO:0010001,GO:0010389,GO:0010467,GO:0010468,GO:0010525,GO:0010528,GO:0010556,GO:0010557,GO:0010564,GO:0010604,GO:0010628,GO:0010927,GO:0010948,GO:0010972,GO:0012501,GO:0014003,GO:0015630,GO:0016043,GO:0016070,GO:0016071,GO:0016310,GO:0016462,GO:0016591,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0021510,GO:0021700,GO:0021782,GO:0022008,GO:0022010,GO:0022402,GO:0022404,GO:0022405,GO:0022607,GO:0030097,GO:0030099,GO:0030154,GO:0030182,GO:0030198,GO:0030218,GO:0030282,GO:0030554,GO:0030855,GO:0030880,GO:0031214,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031334,GO:0031974,GO:0031981,GO:0032288,GO:0032289,GO:0032291,GO:0032392,GO:0032501,GO:0032502,GO:0032508,GO:0032553,GO:0032555,GO:0032559,GO:0032774,GO:0032806,GO:0032989,GO:0032991,GO:0033043,GO:0033554,GO:0033683,GO:0034101,GO:0034367,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0035264,GO:0035315,GO:0035639,GO:0036094,GO:0036211,GO:0036260,GO:0040007,GO:0040016,GO:0042063,GO:0042303,GO:0042552,GO:0042592,GO:0042623,GO:0042633,GO:0043009,GO:0043062,GO:0043139,GO:0043141,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043249,GO:0043254,GO:0043388,GO:0043412,GO:0043588,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0045786,GO:0045893,GO:0045911,GO:0045930,GO:0045935,GO:0045944,GO:0045951,GO:0045995,GO:0046483,GO:0047485,GO:0048468,GO:0048469,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048589,GO:0048646,GO:0048699,GO:0048709,GO:0048731,GO:0048820,GO:0048821,GO:0048856,GO:0048863,GO:0048869,GO:0048872,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051098,GO:0051099,GO:0051101,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051239,GO:0051252,GO:0051254,GO:0051276,GO:0051301,GO:0051716,GO:0051726,GO:0051783,GO:0051983,GO:0055029,GO:0060218,GO:0060255,GO:0060429,GO:0061515,GO:0061695,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070035,GO:0070816,GO:0070911,GO:0071103,GO:0071695,GO:0071704,GO:0071817,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090575,GO:0097159,GO:0097367,GO:0097659,GO:0098687,GO:0098773,GO:0140097,GO:0140110,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902494,GO:1902554,GO:1902680,GO:1902749,GO:1902750,GO:1902911,GO:1903506,GO:1903508,GO:1990234,GO:1990391,GO:2000026,GO:2000112,GO:2001141
EggNOG free text desc.ATP-dependent DNA helicase activity
EggNOG OGsCOG1199@1,KOG1131@2759
EC3.6.4.12
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03021,ko03400
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size138
Cds size138
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930834.7994065-CDS-H-elongata_contig50857:540..6781622930834.7994065-CDS-H-elongata_contig50857:540..678Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50857 541..678 +
1691679590.6362553-CDS-H-elongata_contig50857:540..6781691679590.6362553-CDS-H-elongata_contig50857:540..678Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50857 541..678 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig50857.12345.1prot_H-elongata_contig50857.12345.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig50857 541..678 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig50857.12345.1

>prot_H-elongata_contig50857.12345.1 ID=prot_H-elongata_contig50857.12345.1|Name=mRNA_H-elongata_contig50857.12345.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=46bp
MRFDLDGLDVFFPYEFMYPEQYDYMLELKRSLDAKGHCLLEMPTG*
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mRNA from alignment at H-elongata_contig50857:541..678+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig50857.12345.1 ID=mRNA_H-elongata_contig50857.12345.1|Name=mRNA_H-elongata_contig50857.12345.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=138bp|location=Sequence derived from alignment at H-elongata_contig50857:541..678+ (Himanthalia elongata Himel1 dioecious)
ATGAGGTTCGACTTGGACGGTTTGGATGTCTTCTTCCCCTACGAATTCAT
GTACCCGGAGCAGTACGATTATATGCTCGAGCTTAAGCGATCCCTCGACG
CCAAGGGACACTGCTTGCTGGAGATGCCCACAGGTTAA
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Coding sequence (CDS) from alignment at H-elongata_contig50857:541..678+

>mRNA_H-elongata_contig50857.12345.1 ID=mRNA_H-elongata_contig50857.12345.1|Name=mRNA_H-elongata_contig50857.12345.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=276bp|location=Sequence derived from alignment at H-elongata_contig50857:541..678+ (Himanthalia elongata Himel1 dioecious)
ATGAGGTTCGACTTGGACGGTTTGGATGTCTTCTTCCCCTACGAATTCAT
GTACCCGGAGCAGTACGATTATATGCTCGAGCTTAAGCGATCCCTCGACG
CCAAGGGACACTGCTTGCTGGAGATGCCCACAGGTTAAATGAGGTTCGAC
TTGGACGGTTTGGATGTCTTCTTCCCCTACGAATTCATGTACCCGGAGCA
GTACGATTATATGCTCGAGCTTAAGCGATCCCTCGACGCCAAGGGACACT
GCTTGCTGGAGATGCCCACAGGTTAA
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