mRNA_H-elongata_contig50850.12344.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig50850.12344.1
Unique NamemRNA_H-elongata_contig50850.12344.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig50850.12344.1 vs. uniprot
Match: A0A1W6IYH0_SACJA (Carbonic anhydrase n=2 Tax=Saccharina japonica TaxID=88149 RepID=A0A1W6IYH0_SACJA)

HSP 1 Score: 125 bits (315), Expect = 2.700e-33
Identity = 59/77 (76.62%), Postives = 70/77 (90.91%), Query Frame = 1
Query:   49 IEDVNERHRRYVELNVQESCINLFANPVVQKKQALNSLPRIHGFVYDVATGFLKKLDIDFKAQIRKFQSVYRLHDVP 279
            I DV+ERH+R VELNVQESCINLFANP+VQKKQA +S P+IHG+VYDVATG LKKLDIDFK++IRK+Q VYRL++ P
Sbjct:  216 IPDVDERHKRLVELNVQESCINLFANPIVQKKQATSSQPKIHGWVYDVATGLLKKLDIDFKSEIRKYQDVYRLYEFP 292          
BLAST of mRNA_H-elongata_contig50850.12344.1 vs. uniprot
Match: D8LR72_ECTSI (Carbonic anhydrase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR72_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 5.960e-30
Identity = 54/79 (68.35%), Postives = 68/79 (86.08%), Query Frame = 1
Query:   43 QAIEDVNERHRRYVELNVQESCINLFANPVVQKKQALNSLPRIHGFVYDVATGFLKKLDIDFKAQIRKFQSVYRLHDVP 279
            Q I D++E+ RR VELNVQESCINLFANP+VQKKQA +S+P+IHG+ YDV  G LK+LDIDFKA+IRK++ VYRL++ P
Sbjct:  219 QGISDMDEKSRRLVELNVQESCINLFANPIVQKKQATHSMPKIHGWAYDVGNGLLKELDIDFKAEIRKYRDVYRLYEFP 297          
BLAST of mRNA_H-elongata_contig50850.12344.1 vs. uniprot
Match: H6WB75_VAULI (Carbonic anhydrase n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WB75_VAULI)

HSP 1 Score: 109 bits (273), Expect = 4.050e-27
Identity = 49/77 (63.64%), Postives = 65/77 (84.42%), Query Frame = 1
Query:   49 IEDVNERHRRYVELNVQESCINLFANPVVQKKQALNSLPRIHGFVYDVATGFLKKLDIDFKAQIRKFQSVYRLHDVP 279
            I D ++R +R VELNVQESC+NLF+NP+VQKKQA  S PRIHG+VYD+ATG++K L IDFK +I+K++ +YRL+D P
Sbjct:  187 IPDESQRFKRLVELNVQESCLNLFSNPIVQKKQATASQPRIHGWVYDIATGYVKDLKIDFKTEIKKYRDIYRLYDFP 263          
BLAST of mRNA_H-elongata_contig50850.12344.1 vs. uniprot
Match: A0A835ZBM8_9STRA (Carbonic anhydrase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBM8_9STRA)

HSP 1 Score: 105 bits (261), Expect = 1.480e-25
Identity = 47/77 (61.04%), Postives = 64/77 (83.12%), Query Frame = 1
Query:   49 IEDVNERHRRYVELNVQESCINLFANPVVQKKQALNSLPRIHGFVYDVATGFLKKLDIDFKAQIRKFQSVYRLHDVP 279
            I +  ERH+R VELNVQE+C+NLFANPVVQKKQA ++ PRIHG+VYD+ +G LK L IDF+ +IRK++++Y L++ P
Sbjct:  153 IPNEEERHQRLVELNVQEACMNLFANPVVQKKQATDAQPRIHGWVYDIGSGLLKDLKIDFRTEIRKYKNIYSLYEFP 229          
BLAST of mRNA_H-elongata_contig50850.12344.1 vs. uniprot
Match: A0A6S9IM72_HETAK (Carbonic anhydrase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9IM72_HETAK)

HSP 1 Score: 101 bits (251), Expect = 2.410e-24
Identity = 49/77 (63.64%), Postives = 59/77 (76.62%), Query Frame = 1
Query:   43 QAIEDVNERHRRYVELNVQESCINLFANPVVQKKQALNSLPRIHGFVYDVATGFLKKLDIDFKAQIRKFQSVYRLHD 273
            +AIE    RHRR VELNVQE CINL+ANP+VQK Q   SLPRIHGFVYD+A G +K+L IDFKA+I K +  Y L++
Sbjct:  170 EAIECEEARHRRLVELNVQEQCINLYANPIVQKAQLATSLPRIHGFVYDIAEGLVKELPIDFKAEISKIKQHYSLYN 246          
BLAST of mRNA_H-elongata_contig50850.12344.1 vs. uniprot
Match: A0A7S2XTK6_9STRA (Carbonic anhydrase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XTK6_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 6.340e-23
Identity = 42/75 (56.00%), Postives = 57/75 (76.00%), Query Frame = 1
Query:   49 IEDVNERHRRYVELNVQESCINLFANPVVQKKQALNSLPRIHGFVYDVATGFLKKLDIDFKAQIRKFQSVYRLHD 273
            IED  +RH R VEL+VQE CINLFANP+VQ+ Q  +  PRIHGFVYD+  G+L++L+IDFK ++ K + +Y  +D
Sbjct:  176 IEDEEKRHERLVELSVQEQCINLFANPIVQRSQVTHGYPRIHGFVYDIGNGYLRELEIDFKKEVSKLKDIYSHYD 250          
BLAST of mRNA_H-elongata_contig50850.12344.1 vs. uniprot
Match: A0A7S1N9X7_9EUGL (Carbonic anhydrase n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1N9X7_9EUGL)

HSP 1 Score: 97.1 bits (240), Expect = 6.010e-22
Identity = 43/65 (66.15%), Postives = 53/65 (81.54%), Query Frame = 1
Query:   67 RHRRYVELNVQESCINLFANPVVQKKQALNSLPRIHGFVYDVATGFLKKLDIDFKAQIRKFQSVY 261
            RHRR VELNVQE CINLFANP++Q++QA + LPRIHG VYDV  G L+KLD+DFK  IR+ + +Y
Sbjct:  272 RHRRLVELNVQEQCINLFANPIIQRRQAAHGLPRIHGMVYDVGEGLLRKLDLDFKHSIREMRHIY 336          
BLAST of mRNA_H-elongata_contig50850.12344.1 vs. uniprot
Match: A0A7S2CER7_9STRA (Carbonic anhydrase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CER7_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 2.570e-21
Identity = 40/72 (55.56%), Postives = 56/72 (77.78%), Query Frame = 1
Query:   46 AIEDVNERHRRYVELNVQESCINLFANPVVQKKQALNSLPRIHGFVYDVATGFLKKLDIDFKAQIRKFQSVY 261
            AIE    RHRR VE+NV++ C+NLF+NPV+QK+QA +SLPRIHG VYD++ G ++ +D+DF+  IRK   +Y
Sbjct:  107 AIECDLARHRRMVEMNVEQQCLNLFSNPVIQKRQAEHSLPRIHGLVYDISDGIIRSIDVDFRKHIRKIGHIY 178          
BLAST of mRNA_H-elongata_contig50850.12344.1 vs. uniprot
Match: A0A7S2XW02_9STRA (Carbonic anhydrase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XW02_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 3.210e-20
Identity = 38/78 (48.72%), Postives = 54/78 (69.23%), Query Frame = 1
Query:   43 QAIEDVNERHRRYVELNVQESCINLFANPVVQKKQALNSLPRIHGFVYDVATGFLKKLDIDFKAQIRKFQSVYRLHDV 276
            QAI+D  ERH+  VELNV+E C NL  +P+VQ  QA N  P++HGFVYD +TGFL+ L+I  +  + K+  +Y +H +
Sbjct:  123 QAIQDPEERHKTLVELNVREQCFNLLCHPIVQNSQAQNGCPKVHGFVYDSSTGFLRDLEIPMEKDVAKYHDIYAVHSL 200          
BLAST of mRNA_H-elongata_contig50850.12344.1 vs. uniprot
Match: A0A3R9P279_9BACT (Carbonic anhydrase n=1 Tax=Hymenobacter rigui TaxID=334424 RepID=A0A3R9P279_9BACT)

HSP 1 Score: 81.6 bits (200), Expect = 6.210e-17
Identity = 41/93 (44.09%), Postives = 55/93 (59.14%), Query Frame = 1
Query:    1 RTIGSAFIYQQPVDQAIEDVNERHRRYVELNVQESCINLFANPVVQKKQALNSLPRIHGFVYDVATGFLKKLDIDFKAQIRKFQSVYRLHDVP 279
            R I   +   Q    AIEDV+ R+ R VELNVQE C+N+    VVQ+K   N  P +HG+V+D+ TG LK L +DF+  +   Q +Y L D P
Sbjct:  121 RNIRDVYRLHQAELDAIEDVDVRYDRLVELNVQEQCVNVIKMAVVQQKYLANKYPTVHGWVFDLKTGLLKDLKLDFEEILHSIQEIYNLGDEP 213          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50850.12344.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1W6IYH0_SACJA2.700e-3376.62Carbonic anhydrase n=2 Tax=Saccharina japonica Tax... [more]
D8LR72_ECTSI5.960e-3068.35Carbonic anhydrase n=1 Tax=Ectocarpus siliculosus ... [more]
H6WB75_VAULI4.050e-2763.64Carbonic anhydrase n=1 Tax=Vaucheria litorea TaxID... [more]
A0A835ZBM8_9STRA1.480e-2561.04Carbonic anhydrase n=1 Tax=Tribonema minus TaxID=3... [more]
A0A6S9IM72_HETAK2.410e-2463.64Carbonic anhydrase n=1 Tax=Heterosigma akashiwo Ta... [more]
A0A7S2XTK6_9STRA6.340e-2356.00Carbonic anhydrase n=1 Tax=Fibrocapsa japonica Tax... [more]
A0A7S1N9X7_9EUGL6.010e-2266.15Carbonic anhydrase n=1 Tax=Eutreptiella gymnastica... [more]
A0A7S2CER7_9STRA2.570e-2155.56Carbonic anhydrase n=1 Tax=Dictyocha speculum TaxI... [more]
A0A7S2XW02_9STRA3.210e-2048.72Carbonic anhydrase n=1 Tax=Fibrocapsa japonica Tax... [more]
A0A3R9P279_9BACT6.210e-1744.09Carbonic anhydrase n=1 Tax=Hymenobacter rigui TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig50850contigH-elongata_contig50850:3440..4084 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.2
Seed ortholog evalue5.2e-25
Seed eggNOG ortholog2880.D8LR72
KEGG rclassRC02807
KEGG koko:K01673
KEGG ReactionR00132,R10092
KEGG Pathwayko00910,map00910
EggNOG free text desc.carbonate dehydratase activity
EggNOG OGsCOG0288@1,KOG1578@2759
EC4.2.1.1
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size279
Cds size279
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930834.723147-CDS-H-elongata_contig50850:3439..34871622930834.723147-CDS-H-elongata_contig50850:3439..3487Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50850 3440..3487 -
1691679590.6134686-CDS-H-elongata_contig50850:3439..34871691679590.6134686-CDS-H-elongata_contig50850:3439..3487Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50850 3440..3487 -
1622930834.739832-CDS-H-elongata_contig50850:3853..40841622930834.739832-CDS-H-elongata_contig50850:3853..4084Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50850 3854..4084 -
1691679590.6273725-CDS-H-elongata_contig50850:3853..40841691679590.6273725-CDS-H-elongata_contig50850:3853..4084Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50850 3854..4084 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig50850.12344.1prot_H-elongata_contig50850.12344.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig50850 3440..4084 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig50850.12344.1

>prot_H-elongata_contig50850.12344.1 ID=prot_H-elongata_contig50850.12344.1|Name=mRNA_H-elongata_contig50850.12344.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=93bp
RTIGSAFIYQQPVDQAIEDVNERHRRYVELNVQESCINLFANPVVQKKQA
LNSLPRIHGFVYDVATGFLKKLDIDFKAQIRKFQSVYRLHDVP
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mRNA from alignment at H-elongata_contig50850:3440..4084-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig50850.12344.1 ID=mRNA_H-elongata_contig50850.12344.1|Name=mRNA_H-elongata_contig50850.12344.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=645bp|location=Sequence derived from alignment at H-elongata_contig50850:3440..4084- (Himanthalia elongata Himel1 dioecious)
CGGACGATTGGTTCTGCATTTATCTACCAACAACCCGTTGATCAGGCCAT CGAAGACGTAAACGAGAGGCACCGGCGCTACGTAGAGCTAAACGTACAGG AGTCATGCATCAACTTGTTTGCGAACCCGGTGGTTCAGAAGAAGCAGGCG CTCAACTCGTTGCCTAGGATCCACGGATTTGTGTACGATGTGGCGACAGG CTTCCTCAAGAAGCTGGATATCGACTTCAAGGTATGTGTGTGTGGAAGAG GGAGAGAGAGCTTGGGTTTATGCCTTTTGTCGTGTCCGAGTATACGAACA AGGTAGGATGATATTTTTAGAGAAAACAGTAGCAGTACCAAAAACGATTG GAAAATTGTTCGCAAGGGGGCGTGTTTTCAAAGGTTATCTGAATCCGAGC GATGATATAGTGAACGCGACCATCTGAGGCAATCCCAATCCATATTTTCT ACTACGCTCACGGGAATGCCCTTCCCCCAATCGTTGGTCCACTTAACATG ACGCGATGCGTCCACATCAGCATTTCTTACGCGTCTGAGAGGCGCTGCAT CACGCTGCCCACCATTTTCCGTTCATCTCCCTTATCTGACCCCGCAGGCG CAAATTCGTAAGTTCCAGAGCGTGTACCGCCTGCACGATGTCCCT
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Coding sequence (CDS) from alignment at H-elongata_contig50850:3440..4084-

>mRNA_H-elongata_contig50850.12344.1 ID=mRNA_H-elongata_contig50850.12344.1|Name=mRNA_H-elongata_contig50850.12344.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=558bp|location=Sequence derived from alignment at H-elongata_contig50850:3440..4084- (Himanthalia elongata Himel1 dioecious)
CGGACGATTGGTTCTGCATTTATCTACCAACAACCCGTTGATCAGGCCAT
CGAAGACGTAAACGAGAGGCACCGGCGCTACGTAGAGCTAAACGTACAGG
AGTCATGCATCAACTTGTTTGCGAACCCGGTGGTTCAGAAGAAGCAGGCG
CTCAACTCGTTGCCTAGGATCCACGGATTTGTGTACGATGTGGCGACAGG
CTTCCTCAAGAAGCTGGATATCGACTTCAAGCGGACGATTGGTTCTGCAT
TTATCTACCAACAACCCGTTGATCAGGCCATCGAAGACGTAAACGAGAGG
CACCGGCGCTACGTAGAGCTAAACGTACAGGAGTCATGCATCAACTTGTT
TGCGAACCCGGTGGTTCAGAAGAAGCAGGCGCTCAACTCGTTGCCTAGGA
TCCACGGATTTGTGTACGATGTGGCGACAGGCTTCCTCAAGAAGCTGGAT
ATCGACTTCAAGGCGCAAATTCGTAAGTTCCAGAGCGTGTACCGCCTGCA
CGATGTCCCTGCGCAAATTCGTAAGTTCCAGAGCGTGTACCGCCTGCACG
ATGTCCCT
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