mRNA_H-elongata_contig50827.12339.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig50827.12339.1 vs. uniprot
Match: A0A6H5KEM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEM1_9PHAE) HSP 1 Score: 118 bits (295), Expect = 1.820e-29 Identity = 53/69 (76.81%), Postives = 59/69 (85.51%), Query Frame = 1
Query: 1 VARYKPQGYFKLHTDHVEAFNGLCCGGRLGTLILYLNDAFVGGQTDFPMLGVSVDPTAGDAIYFHNVKV 207
VARY+P GYFKLHTDHVE FN L CGGRLGTLILYLND F GGQTDFP + V+V P AGDAIYFH+V++
Sbjct: 446 VARYRPDGYFKLHTDHVEDFNSLVCGGRLGTLILYLNDDFTGGQTDFPFVHVAVAPFAGDAIYFHSVQL 514
BLAST of mRNA_H-elongata_contig50827.12339.1 vs. uniprot
Match: D7FP64_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP64_ECTSI) HSP 1 Score: 117 bits (293), Expect = 4.490e-29 Identity = 53/69 (76.81%), Postives = 59/69 (85.51%), Query Frame = 1
Query: 1 VARYKPQGYFKLHTDHVEAFNGLCCGGRLGTLILYLNDAFVGGQTDFPMLGVSVDPTAGDAIYFHNVKV 207
VARY+P GYFKLHTDHVE FN L CGGRLGTLILYLND F GGQTDFP + V+V P AGDAIYFH+V++
Sbjct: 595 VARYRPDGYFKLHTDHVEDFNRLVCGGRLGTLILYLNDDFTGGQTDFPFVHVAVAPFAGDAIYFHSVEL 663
BLAST of mRNA_H-elongata_contig50827.12339.1 vs. uniprot
Match: A0A7S3Y6W7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6W7_HETAK) HSP 1 Score: 83.2 bits (204), Expect = 1.170e-17 Identity = 37/69 (53.62%), Postives = 49/69 (71.01%), Query Frame = 1
Query: 1 VARYKPQGYFKLHTDHVEAFNGLCCGGRLGTLILYLNDAFVGGQTDFPMLGVSVDPTAGDAIYFHNVKV 207
V RY+ + LHTDH++ FN L GGRL T ++YLND F GG+TDFP L VSV P G A++++NVK+
Sbjct: 156 VIRYQLNQQYTLHTDHMDEFNELEVGGRLATCLMYLNDDFTGGETDFPELKVSVSPKKGSALFWYNVKL 224
BLAST of mRNA_H-elongata_contig50827.12339.1 vs. uniprot
Match: A0A520HH70_SPHSX (2OG-Fe(II) oxygenase (Fragment) n=1 Tax=Sphingomonas sp. TaxID=28214 RepID=A0A520HH70_SPHSX) HSP 1 Score: 65.1 bits (157), Expect = 4.790e-11 Identity = 32/67 (47.76%), Postives = 43/67 (64.18%), Query Frame = 1
Query: 1 VARYKPQGYFKLHTDHVEAFNGLCCGGRLGTLILYLNDAFVGGQTDFPMLGVSVDPTAGDAIYFHNV 201
V RY P FKLH+D + G R+ T+++YLNDAF GG+T FP G++V P AGDA+ F N+
Sbjct: 131 VLRYAPGQQFKLHSDVI----GRTRNERVATMLVYLNDAFEGGETTFPDHGLTVTPRAGDALLFRNI 193
BLAST of mRNA_H-elongata_contig50827.12339.1 vs. uniprot
Match: A0A7S2KU42_9STRA (Hypothetical protein n=2 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KU42_9STRA) HSP 1 Score: 65.5 bits (158), Expect = 7.680e-11 Identity = 31/81 (38.27%), Postives = 46/81 (56.79%), Query Frame = 1
Query: 1 VARYKPQGYFKLHTDHVEAFNGLCCGGRLGTLILYLNDA---------------FVGGQTDFPMLGVSVDPTAGDAIYFHN 198
V RY+P F++HTDH+++FN + CGGRL T ++YLND+ F GG+T F +V P G A+++ N
Sbjct: 239 VVRYQPGQEFQIHTDHLDSFNDMDCGGRLATCLMYLNDSEDNVPEESLSNNDETFTGGETFFHEFDRAVSPRKGSALFWWN 319
BLAST of mRNA_H-elongata_contig50827.12339.1 vs. uniprot
Match: A0A196ND86_9SPHN (Fe2OG dioxygenase domain-containing protein n=1 Tax=Sphingomonas sp. TDK1 TaxID=453247 RepID=A0A196ND86_9SPHN) HSP 1 Score: 64.3 bits (155), Expect = 1.780e-10 Identity = 31/67 (46.27%), Postives = 40/67 (59.70%), Query Frame = 1
Query: 1 VARYKPQGYFKLHTDHVEAFNGLCCGGRLGTLILYLNDAFVGGQTDFPMLGVSVDPTAGDAIYFHNV 201
V RY P ++ H D + R+ T I+YLN FVGG+TDFP LGV+V P+AGDAI F +
Sbjct: 223 VLRYSPGQQYRRHLDTIAG----AANQRVATFIVYLNQGFVGGETDFPALGVTVRPSAGDAILFETL 285
BLAST of mRNA_H-elongata_contig50827.12339.1 vs. uniprot
Match: A0A0C2MRX7_THEKT (Prolyl 4-hydroxylase subunit alpha-1 n=1 Tax=Thelohanellus kitauei TaxID=669202 RepID=A0A0C2MRX7_THEKT) HSP 1 Score: 61.2 bits (147), Expect = 8.780e-10 Identity = 29/74 (39.19%), Postives = 45/74 (60.81%), Query Frame = 1
Query: 1 VARYKPQGYFKLHTDHVE----AFNGLCC---GGRLGTLILYLNDAFVGGQTDFPMLGVSVDPTAGDAIYFHNV 201
+A Y GY+ H D+ + N GGRL T +LY++D +GG+T FP LG+SV P+ GDA++++N+
Sbjct: 79 LANYGIGGYYDTHFDYARKTEPSINDTLTRRNGGRLATYLLYMSDVTIGGKTGFPRLGISVQPSKGDALFWYNL 152
BLAST of mRNA_H-elongata_contig50827.12339.1 vs. uniprot
Match: A0A3S0EJZ5_9SPHN (2OG-Fe(II) oxygenase n=1 Tax=Sphingomonas ginkgonis TaxID=2315330 RepID=A0A3S0EJZ5_9SPHN) HSP 1 Score: 62.0 bits (149), Expect = 9.340e-10 Identity = 27/67 (40.30%), Postives = 41/67 (61.19%), Query Frame = 1
Query: 1 VARYKPQGYFKLHTDHVEAFNGLCCGGRLGTLILYLNDAFVGGQTDFPMLGVSVDPTAGDAIYFHNV 201
V RY+P FK H D++ + G R+ T +L+LN+ + GG+T+FP +GV GDA++F NV
Sbjct: 159 VLRYRPGEQFKAHVDYLGPASPAADGQRIATFLLFLNEDYAGGETEFPSIGVRHRGRTGDALFFANV 225
BLAST of mRNA_H-elongata_contig50827.12339.1 vs. uniprot
Match: A0A0Q4I1C2_9SPHN (Fe2OG dioxygenase domain-containing protein n=2 Tax=Sphingomonas sp. Leaf22 TaxID=1735687 RepID=A0A0Q4I1C2_9SPHN) HSP 1 Score: 60.1 bits (144), Expect = 5.650e-9 Identity = 30/67 (44.78%), Postives = 41/67 (61.19%), Query Frame = 1
Query: 1 VARYKPQGYFKLHTDHVEAFNGLCCGGRLGTLILYLNDAFVGGQTDFPMLGVSVDPTAGDAIYFHNV 201
V RY P F+LH+D + R+ T++LYLND FVGG+T FP LG+++ P DA+ F NV
Sbjct: 204 VLRYAPGQEFRLHSDAIAGARNQ----RIATMLLYLNDDFVGGETVFPDLGLTIRPKRCDALLFGNV 266
BLAST of mRNA_H-elongata_contig50827.12339.1 vs. uniprot
Match: UPI0009EC8EBB (2OG-Fe(II) oxygenase n=1 Tax=unclassified Sphingomonas TaxID=196159 RepID=UPI0009EC8EBB) HSP 1 Score: 59.7 bits (143), Expect = 8.280e-9 Identity = 30/67 (44.78%), Postives = 41/67 (61.19%), Query Frame = 1
Query: 1 VARYKPQGYFKLHTDHVEAFNGLCCGGRLGTLILYLNDAFVGGQTDFPMLGVSVDPTAGDAIYFHNV 201
+ RY+ F+LH+D + A R T+I+YLN+ F+GG+T FP+L V V P GDAI F NV
Sbjct: 222 ILRYQVGQQFRLHSDALPASKNQ----RTKTVIIYLNNDFIGGETVFPILNVKVSPVMGDAIIFSNV 284 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50827.12339.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig50827.12339.1 >prot_H-elongata_contig50827.12339.1 ID=prot_H-elongata_contig50827.12339.1|Name=mRNA_H-elongata_contig50827.12339.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=69bp VARYKPQGYFKLHTDHVEAFNGLCCGGRLGTLILYLNDAFVGGQTDFPMLback to top mRNA from alignment at H-elongata_contig50827:3860..4066+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig50827.12339.1 ID=mRNA_H-elongata_contig50827.12339.1|Name=mRNA_H-elongata_contig50827.12339.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=207bp|location=Sequence derived from alignment at H-elongata_contig50827:3860..4066+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig50827:3860..4066+ >mRNA_H-elongata_contig50827.12339.1 ID=mRNA_H-elongata_contig50827.12339.1|Name=mRNA_H-elongata_contig50827.12339.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=414bp|location=Sequence derived from alignment at H-elongata_contig50827:3860..4066+ (Himanthalia elongata Himel1 dioecious)back to top |