mRNA_H-elongata_contig50827.12338.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig50827.12338.1 vs. uniprot
Match: A0A6H5KEM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEM1_9PHAE) HSP 1 Score: 300 bits (768), Expect = 9.910e-94 Identity = 192/381 (50.39%), Postives = 234/381 (61.42%), Query Frame = 1
Query: 1 QQALARISCGVLRAVARQTLPEIDANGFLELIDGGDGEGGGGSSAISPPSGELLSSSPLRLCRYAGPQGGVAFGAHTDATFLTTIPCASTPGLEILRPASGRWWRPEAAPSCRPWTDVMLLAGELLQALGRGRYRASVHRVVCPAGTLLYQPRVSTPLLLRGAMESTVPDSLLPPWL-----KQKPRPNTTR--------------GDRSGRKVTIATLSAGLHLCGGAASPPGEXXXAAGIVATSSGDDFLSRGSPLAIARNLAGRDDEIRRAFGPFAPGGMTILSSDPLLVRLHGFASRAECDAIMAGVIAAPSSSASGDLEESTTWLSTDAQRDKSDGLRRSSTCWIADGAL-PHLTELTERVSGLSGLPSRFMEKWQ 1083
++AL IS G+L+AV RQ+LPEID FL L+D G+G G G S SP +S+SPLR+CRYAG GVAFG HTD TFLT IPCAS PGLEI++P++GRW RPEA+ CRP +DVMLLAGELLQ GRGRY+A+VHRVV PAG+ +PRVSTPLLLRG + + S+LPP + ++ TR GD G ++ + L A L GGA PG G S D +S PLA A+ D+IR F P+A G+ +LS DPLLVRL GFAS +C AI+ LEESTTW AQ + SD LRRS+T W+AD L P L LTERVSG+SG+PS FMEKWQ
Sbjct: 91 RRALTAISGGILQAVLRQSLPEIDPASFLGLVDPGEGRQGVGGS--SPK----MSASPLRVCRYAGGGDGVAFGTHTDTTFLTVIPCASAPGLEIIQPSTGRWVRPEASRDCRPGSDVMLLAGELLQVFGRGRYQAAVHRVVRPAGST--EPRVSTPLLLRGVAGAAIRGSMLPPAVAARLERRSEEAKQTRREIRRAAGGSSWEEGDEGG-ELNMTDLWAALQFRGGAT--PGSSGGGDGWSGEIS--DSVSSPPPLAQAKTT----DQIRECFEPYARDGVAVLSVDPLLVRLRGFASPDQCSAII--------DQGMESLEESTTWGGAGAQTE-SDVLRRSATTWLADDCLAPLLGRLTERVSGMSGVPSAFMEKWQ 445
BLAST of mRNA_H-elongata_contig50827.12338.1 vs. uniprot
Match: D7FP64_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP64_ECTSI) HSP 1 Score: 300 bits (767), Expect = 5.010e-92 Identity = 188/382 (49.21%), Postives = 234/382 (61.26%), Query Frame = 1
Query: 1 QQALARISCGVLRAVARQTLPEIDANGFLELIDGGDGEGGGGSSAISPPSGELLSSSPLRLCRYAGPQGGVAFGAHTDATFLTTIPCASTPGLEILRPASGRWWRPEAAPSCRPWTDVMLLAGELLQALGRGRYRASVHRVVCPAGTLLYQPRVSTPLLLRGAMESTVPDSLLPPWL-----KQKPRPNTTR--------------GDRSGRKVTIATLSAGLHLCGGAA-SPPGEXXXAAGIVATSSGDDFLSRGSPLAIARNLAGRDDEIRRAFGPFAPGGMTILSSDPLLVRLHGFASRAECDAIMAGVIAAPSSSASGDLEESTTWLSTDAQRDKSDGLRRSSTCWIADGAL-PHLTELTERVSGLSGLPSRFMEKWQ 1083
++AL IS G+L+AV RQ+LPEID FL L+D G+G G G S+ + +S+SPLR+CRYAG GVAFG HTD TFLT IPCAS PGLEI++P++GRW RPEA+ CRP +DVMLLAGELLQ GRGRY+A+VHRVV PAG+ +PRVSTPLLLRG + + S+LPP + ++ TR GD +G ++ + L A L GGA G G ++ D +S PLA + D+IR F P+A G+ +LS DPLLVRL GFAS +C AI+ LEESTTW AQ + SD LRRS+T W+AD L P L LTERVSG+SGLPS FMEKWQ
Sbjct: 240 RRALTAISGGILQAVLRQSLPEIDPAAFLGLVDPGEGRQGVGGSSPN------MSASPLRICRYAGGGDGVAFGTHTDTTFLTVIPCASAPGLEIIQPSTGRWVRPEASRDCRPGSDVMLLAGELLQVFGRGRYQAAVHRVVRPAGST--EPRVSTPLLLRGIAGAAIRGSMLPPAVAARLERRSEEAKQTRREIXXXXXXXXXEEGDEAG-ELNMTDLWAALQFRGGATPESSGGGDGWGGEIS-----DSVSSPPPLAQTKTT----DQIRECFEPYARDGVAVLSVDPLLVRLRGFASPGQCSAII--------DQGMESLEESTTWGGAGAQTE-SDALRRSATTWLADDCLAPLLGRLTERVSGMSGLPSAFMEKWQ 594
BLAST of mRNA_H-elongata_contig50827.12338.1 vs. uniprot
Match: A0A7S4D4K1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D4K1_HETAK) HSP 1 Score: 100 bits (250), Expect = 4.770e-22 Identity = 51/91 (56.04%), Postives = 61/91 (67.03%), Query Frame = 1
Query: 211 VAFGAHTDATFLTTIPCASTPGLEILRPASGRWWRPEAAPSCRPWTDVMLLAGELLQALGRGRYRASVHRVVCPAGTLLYQPRVSTPLLLR 483
V FGAHTD TF+T IPC++ PGLE+ PA W RPE P+CRP D+++L GELLQ L G Y A+VHRVV G RVS PLL+R
Sbjct: 6 VTFGAHTDTTFVTLIPCSNIPGLEVFSPALDGWVRPE--PACRPGRDIIILPGELLQVLSAGHYPAAVHRVVSVGGGTA---RVSAPLLVR 91
BLAST of mRNA_H-elongata_contig50827.12338.1 vs. uniprot
Match: F0YH17_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YH17_AURAN) HSP 1 Score: 107 bits (266), Expect = 1.640e-21 Identity = 94/308 (30.52%), Postives = 128/308 (41.56%), Query Frame = 1
Query: 160 LSSSPLRLCRYAGPQGGVAFGAHTDATFLTTIPCASTPGLEILRPASGRWWRPEAAPSCRPWTDVMLLAGELLQALGRGRYRASVHRVVCPAGTLLYQPRVSTPLLLRGAMESTVPDSLLPPWLKQKPRPNTTRGDRSGRKVTIATLSAGLHLCGGAASPPGEXXXAAGIVATSSGDDFLSRGSPLAIARNLAGRDDEIRRAFGPFAPGGMTILSSDPLLVRLHGFASRAECDAIMAGVIAAPSSSASGDLEESTTWLSTDAQRDKSDGLRRSSTCWIADGALPHLTELTERVSGLSGLPSRFMEKWQ 1083
+S++ RLCRYA V FGAHTD +F T +P +S PGLE+ P+ W RPEAA TDV+ + GE L+ G +RA VHRV+ G RVSTPLL+RG R+ + ++A H C A A I + D S +P R A + A G G +LS+DPL+V L GFAS A+C A++A S T W+ D A P +L R + ++ LP E+W+
Sbjct: 743 VSTTAHRLCRYAPSSKAVVFGAHTDTSFFTLVPLSSPPGLEVFDPSLDAWVRPEAAEGAEA-TDVLCMPGEFLELASAGAFRAVVHRVL--GGPT---KRVSTPLLVRG-----------------------------DRRFALGGVNA--HDCWRALQEREPDRAAEAIRGAPAHVDGASYVAPH---RTRAEAETFYSLALG----GAAEVLSADPLVVLLPGFASDADCAAVLAAA---------------------------------SRTAWLDDAAAPG--DLALRAAAVAELPPAHAERWR 971
BLAST of mRNA_H-elongata_contig50827.12338.1 vs. uniprot
Match: A0A7S3NIL1_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NIL1_9STRA) HSP 1 Score: 102 bits (255), Expect = 3.460e-21 Identity = 53/111 (47.75%), Postives = 70/111 (63.06%), Query Frame = 1
Query: 160 LSSSPLRLCRYAGPQGGVAFGAHTDATFLTTIPCASTPGLEILRPASGRWWRPEAAPSCRPWTDVMLLAGELLQALGRGRYRASVHRVVCPAGTLLYQ--PRVSTPLLLRG 486
+S++ RLCRY + VAFG+HTD TFLT +PCAS PGLE+ P+ G + EA+P P DV+ LAGE L L G+Y ++VHRV+ + + R STPLLLR
Sbjct: 178 VSTTVFRLCRYESIKEDVAFGSHTDTTFLTLVPCASQPGLEVFDPSIGAFLCHEASPLACPGRDVICLAGEFLDLLSNGKYGSAVHRVILTSADAKQRRTTRSSTPLLLRA 288
BLAST of mRNA_H-elongata_contig50827.12338.1 vs. uniprot
Match: A0A1Z5J8Q8_FISSO (2OG-FeII_Oxy domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J8Q8_FISSO) HSP 1 Score: 97.4 bits (241), Expect = 1.840e-18 Identity = 64/147 (43.54%), Postives = 78/147 (53.06%), Query Frame = 1
Query: 88 ELIDGGDGEGGGGSSAISPPSGELLSSSPLRLCRYAGPQGGVA----------FGAHTDATFLTTIPCASTPGLEILRPASGRWWRPEAAPSCRPWTDVMLLAGELLQALGRGRYRASVHRVVCPAGTLLYQPRVSTPLLLRGAMES 498
EL+D G G GGS +S SP RLCRY P FGAHTD+TF+T +P A+ PGLE+ A+ RW+RPEA + V+L+ GE LQ L R ASVHRVV A + R S PLLLRG E+
Sbjct: 456 ELVDHG---GSGGS----------VSMSPHRLCRYYSPSTDAGSKDDQKYREVFGAHTDSTFITAVPVATVPGLEVYDEAAERWYRPEALLTSSHCRYVVLVPGEFLQLLTRQEILASVHRVVVGA-----EQRFSAPLLLRGRPEA 584
BLAST of mRNA_H-elongata_contig50827.12338.1 vs. uniprot
Match: A0A7S2G6D7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G6D7_9STRA) HSP 1 Score: 92.0 bits (227), Expect = 4.250e-18 Identity = 63/158 (39.87%), Postives = 85/158 (53.80%), Query Frame = 1
Query: 82 FLELIDGGDGEGGGGSSAISPPSGELLSSSPLRLCRYAGPQGGVAFGAHTDATFLTTIPCAST---PGLEILRPASGRWWRPEAAPSCRPWTDVMLLAGELLQALGRGRYRASVHRVVCPAGTLLYQPRVSTPLLLRGA----MESTVPDSLLPPWLK 534
FL L+D GD +S LS + R CRY +AFG+HTD+TF T IP AS+ PG+++ + G+W PE +C TDV+++ GE LQ L G Y A+VHRV P + RVSTP+L+RG +E VP L P +K
Sbjct: 55 FLGLMDRGD------EVELSS-----LSHTVQRFCRYGSEGKRIAFGSHTDSTFFTVIPVASSVLQPGVQVF--SQGQWLCPET--NCDAETDVLIMTGEFLQVLSNGVYPAAVHRVNRPR----HGSRVSTPMLVRGKPSAFLERHVPTGLYPANVK 193
BLAST of mRNA_H-elongata_contig50827.12338.1 vs. uniprot
Match: A0A836CHQ9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHQ9_9STRA) HSP 1 Score: 83.6 bits (205), Expect = 4.240e-14 Identity = 68/210 (32.38%), Postives = 95/210 (45.24%), Query Frame = 1
Query: 7 ALARISCGVLRAVARQTLPEIDANGFLELIDGGD-------GEGGGG--------SSAISPPSGELLSSSPLRLCRYAGPQG-----------------------------GVAFGAHTDATFLTTIPCASTPGLEILRPASGRWWRPEAAPSCRPWTDVMLLAGELLQALGRGRYRASVHRVVCPAGTLLYQPRVSTPLLLRGAMESTV 504
AL+R++ V+ A AR I L+DG D G G G ++A + +S + RLCRY+ P+ V FGAHTD T +T +PC S PG+++ G W PE +P DV +L+GELLQAL G++ A+VHRVV A Q R+S PLL+R ++V
Sbjct: 154 ALSRVAAAVVAAAARDC--GIAPTELCALMDGDDSYVETVPGSGPGNDPEARNGVAAAAERAAATRMSETVHRLCRYSPPEPEHTAAESAXXXXXXXXXXXXXXXXXXXSVSVTFGAHTDTTMVTLVPC-SVPGIQV-HTRGGGWVGPEGSPCIARGRDVAVLSGELLQALSAGKFPAAVHRVVAGA-----QGRLSAPLLVRERAGASV 354
BLAST of mRNA_H-elongata_contig50827.12338.1 vs. uniprot
Match: A0A7S2DXD9_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2DXD9_9EUKA) HSP 1 Score: 65.9 bits (159), Expect = 7.900e-10 Identity = 41/93 (44.09%), Postives = 54/93 (58.06%), Query Frame = 1
Query: 211 VAFGAHTDATFLTTIPCASTPGLEILRPASGRWWRPEAAPSCRPWTDVMLLAGELLQALGRGRYRASVHRVVCPAGTLLYQPRVSTPLLLRGA 489
+AF AHTD T+LT IPCAS PGLE+ R +SGR R +V +L G+ LQ++ Y A+ HRV+ P R+S PLL+R A
Sbjct: 9 LAFPAHTDGTWLTIIPCASQPGLEV-RASSGRV---SLEKQGRYGINVAVLTGDFLQSMSNFEYTAASHRVLRPQSG--DPERLSAPLLMRAA 95
BLAST of mRNA_H-elongata_contig50827.12338.1 vs. uniprot
Match: UPI00023E6CDE (gibberellin 2-beta-dioxygenase 1-like n=2 Tax=cellular organisms TaxID=131567 RepID=UPI00023E6CDE) HSP 1 Score: 55.1 bits (131), Expect = 1.940e-5 Identity = 31/92 (33.70%), Postives = 49/92 (53.26%), Query Frame = 1
Query: 205 GGVAFGAHTDATFLTTIPCASTPGLEILRPASGRWWRPEAAPSCRPWTDVMLLAGELLQALGRGRYRASVHRVVCPAGTLLYQPRVSTPLLL 480
G + AH+D FLT +P A+ PGL++ A G W P + V + G++LQ G + ++VHRV+ P+G + R+S P+ L
Sbjct: 61 GAIRAAAHSDINFLTVLPAANQPGLQVKH-ADGHWID---VPGDFGYLIVNI--GDMLQEATNGYFPSTVHRVINPSGPSARRSRISLPIFL 146 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50827.12338.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig50827.12338.1 >prot_H-elongata_contig50827.12338.1 ID=prot_H-elongata_contig50827.12338.1|Name=mRNA_H-elongata_contig50827.12338.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=362bp QQALARISCGVLRAVARQTLPEIDANGFLELIDGGDGEGGGGSSAISPPSback to top mRNA from alignment at H-elongata_contig50827:2391..3477+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig50827.12338.1 ID=mRNA_H-elongata_contig50827.12338.1|Name=mRNA_H-elongata_contig50827.12338.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1087bp|location=Sequence derived from alignment at H-elongata_contig50827:2391..3477+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig50827:2391..3477+ >mRNA_H-elongata_contig50827.12338.1 ID=mRNA_H-elongata_contig50827.12338.1|Name=mRNA_H-elongata_contig50827.12338.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2172bp|location=Sequence derived from alignment at H-elongata_contig50827:2391..3477+ (Himanthalia elongata Himel1 dioecious)back to top |