mRNA_H-elongata_contig50794.12333.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig50794.12333.1 vs. uniprot
Match: D8LR95_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LR95_ECTSI) HSP 1 Score: 393 bits (1010), Expect = 6.320e-126 Identity = 228/406 (56.16%), Postives = 258/406 (63.55%), Query Frame = 1
Query: 1 ISRLYERAFGYRLTALEALWAGFRDFVERTSWDNLTPP---------CTPDAAGKVPQTLCDAMRVPNGGSTSSGGIGTGEEA-----AASEGSTKAARKERLVKILEDKRKVSLRGRERRESFERRITRPHFHVKPLDDAQLSAWSEFLDFEISQQA-------CGGSGQDDPSLTATASAAGENSMGRKRSRCSKAAAFRGS-DVERLFERCLVPCASYWWLWERYALWKESVWGVEAALEVAERACSPFLQWRPEALFFRAELLERVNRTDDARAVYRRVLSEVAPGLVEAACKLACFERRCGDRQAADKAYRLLLPPPLGSSTSAEVAIAGGSW-SGWEETTETTRPYLYMQLARFQHRILGDAAAARTTFRAAVADVPSSRELWLAFLEFEAAQPQVMCCG 1149
++RLYERAFG+RL LE LW GF++FV+ W L P + E A +A EGST A +K LV+ L +KRK SLRGR+RRESFERRI+RPHFHVKPLDDAQL AWS++LDFE +Q A RGS DVERLFERCLVPCASY WLWERYALWKESV G+E+ALEVAERACSPFL+WRPEALFF+AELLERV R ++AR VY+ VLSEVAPGLVE ACKLACFERRCG+R+AA AYR LLPPPLG S WEETTETTRPYLYMQLARFQ R+LG+ +AR TFRAAV D+P SRELWLAFLEFEAAQPQ + G
Sbjct: 217 VTRLYERAFGHRLKDLEVLWIGFKEFVDGLPWGKLRPSPXXXXXXXXXXXXXXXXXXXXXXXXXXXEGDDAVDDDDFEVAEAALVVASSAEEGSTDADKKAMLVRTLGEKRKASLRGRQRRESFERRISRPHFHVKPLDDAQLLAWSQYLDFEQAQAAGAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRGSGDVERLFERCLVPCASYSWLWERYALWKESVRGLESALEVAERACSPFLRWRPEALFFKAELLERVGRKEEARNVYQHVLSEVAPGLVEGACKLACFERRCGNREAASAAYRSLLPPPLGLPAGXXXXXXXXXXXSHWEETTETTRPYLYMQLARFQQRVLGNPGSARATFRAAVGDIPGSRELWLAFLEFEAAQPQALHAG 622
BLAST of mRNA_H-elongata_contig50794.12333.1 vs. uniprot
Match: A0A7S2V484_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V484_9STRA) HSP 1 Score: 154 bits (388), Expect = 2.750e-39 Identity = 102/283 (36.04%), Postives = 133/283 (47.00%), Query Frame = 1
Query: 319 RESFERRITRPHFHVKPLDDAQLSAWSEFLDFEISQQACGGSGQDDPSLTATASAAGENSMGRKRSRCSKAAAFRGSDVERLFERCLVPCASYWWLWERYALWKESVWGVEAALEVAERACSPFLQWRPEALFFRAELLERVNRTDDARAVYRRVLSEVAPGLVEAACKLACFERRCGDRQAADKA---YRLLLPPPLGSSTSAEVAIAGGSWSGWEETTETTR----------PYLYMQLARFQHRILGDAAAARTTFRAAVADVPSSRELWLAFLEFEAAQ 1128
R+ FE +I RP++HVKPLD+ QL W E+LD+ S C AA ERL+ERC+VPCA+Y W RYA WKE+ G E + EVA R CS FL++RP A F A+LLE +AR VY V GLVE A + FERR G+ A +KA Y LL + + G + P++Y+ AR Q +IL D AR T+ AV P ++E+WLA L+FE Q
Sbjct: 1 RKRFEDKIKRPYYHVKPLDETQLQNWREYLDYSESH-------------------------------CEAAA------TERLYERCVVPCANYAEFWMRYANWKETALGAEQSEEVAHRCCSVFLRYRPAAHLFYADLLEAHGHVQEARQVYENASRSVGVGLVELALRWVNFERRQGE--AGEKALPIYDQLLEQLKEQQQAVDGKAEGXXXXXXXXXXXXXKDKPAPDSAVLPFVYLHKARLQDKILKDIEGARATYNVAVETYPKNKEIWLALLQFEFGQ 244
BLAST of mRNA_H-elongata_contig50794.12333.1 vs. uniprot
Match: A0A835Z852_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z852_9STRA) HSP 1 Score: 123 bits (309), Expect = 3.390e-28 Identity = 82/192 (42.71%), Postives = 95/192 (49.48%), Query Frame = 1
Query: 316 RRESFERRITRPHFHVKPLDDAQLSAWSEFLDFEISQQACGGSGQDDPSLTATASAAGENSMGRKRSRCSKAAAFRGSDVERLFERCLVPCASYWWLWERYALWKESVWGVEAALEVAERACSPFLQWRPEALFFRAELLERVNRTDDARAVYRRVLSEVAPGLVEAACKLACFERRCGDRQAADKAYRLLL 891
RR E R+ RP FHVKPLD QL+AW LD E E + G R V +ERCLV CA+Y W RYALW G AA VA RAC+ L+ RP+ AELLE D AR +Y RVLS++APGL+EAA +LA ERR GD AA AYR L
Sbjct: 226 RRAPLEARLVRPFFHVKPLDATQLAAWRALLDLE------------------------EAASGAAR-------------VAAAYERCLVACANYAEFWARYALWTARAVGAAAACNVAGRACA-VLRRRPDVHLLCAELLEAAGYGDAARGMYARVLSDLAPGLLEAAVRLAALERRRGDAAAAVAAYRCAL 379
BLAST of mRNA_H-elongata_contig50794.12333.1 vs. uniprot
Match: A0A8J2SLJ5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SLJ5_9STRA) HSP 1 Score: 124 bits (312), Expect = 7.080e-28 Identity = 93/269 (34.57%), Postives = 121/269 (44.98%), Query Frame = 1
Query: 319 RESFERRITRPHFHVKPLDDAQLSAWSEFLDFEISQQACGGSGQDDPSLTATASAAGENSMGRKRSRCSKAAAFRGSDVERLFERCLVPCASYWWLWERYALWKESVWGVEAALEVAERACSPFLQWRPEALFFRAELLERVNRTDDARAVYRRVLSEVAPGLVEAACKLACFERRCGDRQAADKAYRLLLPPPLGSSTSAEVAIAGGSWSGWEETTETTRPYLYMQLARFQHRILGDAAAARTTFRAAVADVPSSRELWLAFLEFEAA 1125
R +ERRI RP+FH KPLD+ QL AW +LD+E +N G + V L+ERCLV C +Y W RYA + S + A+ V +R S FL+ P+ L +A LLE D AR V+ + APGL+EA A FERRCG R+ Y LP + GS R + LARFQ +L DA AAR T A+ + P R+LW+A+ EAA
Sbjct: 236 RSPYERRIRRPYFHAKPLDEDQLRAWRAYLDWEE-----------------------DNGDGER--------------VRHLYERCLVACCAYPEFWCRYASYL-SPSSSDEAVAVLDRGLS-FLKHAPDLLLLKAALLEATGDVDGARLVHESLTEHSAPGLLEAVLAHARFERRCGSREDVLAIYNGALP-----------RLDAGS---------DARGLVQAALARFQLTVLRDANAARVTLENAIREAPQCRDLWVAYYALEAA 445
BLAST of mRNA_H-elongata_contig50794.12333.1 vs. uniprot
Match: M4BN98_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BN98_HYAAE) HSP 1 Score: 123 bits (308), Expect = 5.230e-27 Identity = 91/288 (31.60%), Postives = 132/288 (45.83%), Query Frame = 1
Query: 262 RLVKILEDKRKVSLRGRERRESFERRITRPHFHVKPLDDAQLSAWSEFLDFEISQQACGGSGQDDPSLTATASAAGENSMGRKRSRCSKAAAFRGSDVERLFERCLVPCASYWWLWERYALWKESVWGVEAALEVAERACSPFLQWRPEALFFRAELLERVNRTDDARAVYRRVLSEVAPGLVEAACKLACFERRCGDRQAADKAYRLLLPPPLGSSTSAEVAIAGGSWSGWEETTETTRPYLYM--QLARFQHRILGDAAAARTTFRAAVADVPSSRELWLAFLEFE 1119
++V ++E + ++ RR++FE I R +FHV P+ ++ + W +L+FE + SG D +RC E L+ERCL+ CA+Y +W RY W E V G E+A V +RA + FL++R A LE N+ +A+ VY +VLS+VAP LVE + FERR GD +AA + G + Y Y+ A F H+ +GDAA+AR F AV S LWL F+ FE
Sbjct: 256 KIVNVMEAVKNKTMEDIYRRQAFEAGIDRSYFHVTPVAESAMKNWHSYLEFEEA------SGND--------------------ARC-----------ETLYERCLISCANYEEIWLRYVQWNEKVLGFESADAVFQRAVTIFLKYRASTYLEYASFLEAHNKLQEAQDVYMKVLSDVAPKLVEGFLRYCNFERRRGDVEAAKTWFE----------------------RGMDAVENDAGAYAYVATSYATFLHKSVGDAASARAVFDRAVQKHDGSVLLWLNFIHFE 484
BLAST of mRNA_H-elongata_contig50794.12333.1 vs. uniprot
Match: C1E8A9_MICCC (TPR_MalT domain-containing protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1E8A9_MICCC) HSP 1 Score: 120 bits (301), Expect = 4.360e-26 Identity = 123/403 (30.52%), Postives = 162/403 (40.20%), Query Frame = 1
Query: 1 ISRLYERAFGYRLTALEALWAGFRDFVERTSWDNLTPP----CTPDAAGKVPQTLCDAMRVPNGGSTSSGGIGTGEEAAASEG------------------STKAA-----RKERLVKILEDKRKVSLRGRERRESFERRITRPHFHVKPLDDAQLSAWSEFLDFEISQQACGGSGQDDPSLTATASAAGENSMGRKRSRCSKAAAFRGSDVERLFERCLVPCASYWWLWERYALWKESV--WGVEAALEVAERACSPFLQWRPEALFFRAELLERVNRTDDARAVYRRVLSEVAPGLVEAACKLACFERRCGDRQAADKAYRLLLPPPLGSSTSAEVAIAGGSWSGWEETTETTRPYLYMQLARFQHRILGDAAAARTTF-RAAVADVPSSRELWLAFLEFE 1119
++RLY R L L+ WAGF FV S + PP A G +P A G+T++ + T +AAAS G +T+AA R R + + + +L R RE FE+R+ RP+FHVKPLDDAQL+ W +LD E AG+ S V RL+ERCLVPCASY W RYA W+ S GV AA +RA + F + E F A E V D ARA Y V +VAPGL+ + A ERR G A + Y + + A L + A H GD AR + RAA ++ +W +L FE
Sbjct: 178 VTRLYGRVLRVPLKELDKYWAGFETFVTNRSPSAVIPPEELRAIDAAVGGIPPKGATAP-----GATAASRLAT--DAAASNGVDGGDXXXXXXXXXXXXXATEAAGGSDPRLLRFRDVRFETYRATLAVRATREPFEQRVKRPYFHVKPLDDAQLANWDTYLDNE--------------------ERAGDV-----------------SSVTRLYERCLVPCASYSRFWLRYARWQASDAGQGVAAARAALQRAANVFCKRDVEVHFALARFEEAVGDVDAARAAYAHVADDVAPGLLRCVVERANLERRAGALDVAKETYERAMQVEKSREGAGSKAYG----------------VLACKYAAMLHEACGDVEGARKVYERAAEVGDGANALVWDGWLNFE 520
BLAST of mRNA_H-elongata_contig50794.12333.1 vs. uniprot
Match: A0A383WHJ6_TETOB (Uncharacterized protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383WHJ6_TETOB) HSP 1 Score: 115 bits (288), Expect = 2.870e-24 Identity = 90/271 (33.21%), Postives = 116/271 (42.80%), Query Frame = 1
Query: 319 RESFERRITRPHFHVKPLDDAQLSAWSEFLDFEISQQACGGSGQDDPSLTATASAAGENSMGRKRSRCSKAAAFRGSDVERLFERCLVPCASYWWLWERYALWKESVWGVEAALEVAERACSPFLQWRPEALFFRAELLERVNRTDDARAVYRRVLSEVAPGLVEAACKLACFERRCGDRQAADKAYRLLLPPPLGSSTSAEVAIAGGSWSGWEETTETTRPYLYMQLARFQHRILGDAAAARTTFRAAVADVPSSRELWLAFLEFEAAQP 1131
R+ +E I RP++HVKPLD AQL W+ +LD++ +Q G LT RL+ERC VPCASY W+RY LW E+ EAA V RA + + RP+ F A E D ARA YRRVLSE+APGL+E A FERR G Q A S +G +L + A F ++ GD AR + +A P+ + LW L FE P
Sbjct: 411 RQQYEAAIRRPYWHVKPLDAAQLRNWAAYLDWQEAQGELG--------LTV-----------------------------RLYERCCVPCASYPEFWQRYVLWCEAN-QPEAAAAVLARATAVHCKRRPDLAVFAARFHEAAGDADAARAAYRRVLSELAPGLLEVVLAAANFERRMG--QPAXXXXXXXXXXXXXXXXXXXXXXXXXSVAG----------FLSLLYANFLRQVYGDVERARQVLQEGLAASPACQALWEGALFFEETLP 631
BLAST of mRNA_H-elongata_contig50794.12333.1 vs. uniprot
Match: A0A5J4XXZ2_9CHLO (Pre-mRNA-processing factor 39-like n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XXZ2_9CHLO) HSP 1 Score: 111 bits (278), Expect = 6.040e-23 Identity = 90/273 (32.97%), Postives = 115/273 (42.12%), Query Frame = 1
Query: 316 RRESFERRITRPHFHVKPLDDAQLSAWSEFLDFEISQQACGGSGQDDPSLTATASAAGENSMGRKRSRCSKAAAFRGSDVERLFERCLVPCASYWWLWERYALWKESVWGVEAALEVA-ERACSPFLQWRPEALFFRAELLERVNRTDDARAVYRRVLSEVAPGLVEAACKLACFERRCGDRQAADKAYRLLLPPPLGSSTSAEVAIAGGSWSGWEETTETTRPYLYMQLARFQHRILGDAAAARTTFRAAVADVPSSRELWLAFLEFEAAQP 1131
RR+ FE I RP+FHVKPLD AQL WS +LD+ ++ G + RL+ERCLV CASY LW RY W+E +AA +VA ERA S + RPE F A ER D ARA++R V +AP L+ A + A FERR G + AA Y L G ++ V + Y+ FQ D AR + AA+ S LW + FE P
Sbjct: 618 RRKPFEDAIKRPYFHVKPLDSAQLQNWSRYLDYIEEKKDIG-------------------------------------MIIRLYERCLVACASYPDLWMRYVRWQEI--SSKAAAQVALERATSVHCKRRPEMQLFAAHFHERHGNADTARALFRLVTERLAPTLIPGAVQHANFERRQGSKAAACAVYDKFLEREAGKDSATYVFVV--------------IQYINALQCGFQ-----DTQKAREVYNAALEKAQDSIMLWEGIIHFEETLP 832
BLAST of mRNA_H-elongata_contig50794.12333.1 vs. uniprot
Match: A0A8J9RZN4_9CHLO (Probable pre-mRNA-processing factor 39 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RZN4_9CHLO) HSP 1 Score: 107 bits (266), Expect = 1.880e-21 Identity = 85/268 (31.72%), Postives = 117/268 (43.66%), Query Frame = 1
Query: 316 RRESFERRITRPHFHVKPLDDAQLSAWSEFLDFEISQQACGGSGQDDPSLTATASAAGENSMGRKRSRCSKAAAFRGSDVERLFERCLVPCASYWWLWERYALWKESVWGVEAALEVAERACSPFLQWRPEALFFRAELLERVNRTDDARAVYRRVLSEVAPGLVEAACKLACFERRCGDRQAADKAYRLLLPPPLGSSTSAEVAIAGGSWSGWEETTETTRPYLYMQLARFQHRILGDAAAARTTFRAAVADVPSSRELWLAFLEFE 1119
RR++FE I RP+FHVKPLD AQL AWS +LD+ A G+N++ L+ERCLV CA Y W RY + E +AA E RA + +PE A ER AR Y V+S++APGL+ A FERR G++ AA K Y + A+A + G ++E T +L + A F + D AAR+ + +A+ P S LW + E
Sbjct: 404 RRKAFEDAIKRPYFHVKPLDGAQLLAWSRYLDY--------------------AEERGDNTV-----------------TTHLYERCLVACAQYHDFWARYIRFLEPE-RPDAAKEALRRAQHIHCKAQPELQLLAARFHERHGDLAAARTAYELVVSKLAPGLISAVLAFVNFERRQGNKAAACKIY--------------DDAVAAAADKG--SSSERTYAFLVVSYAHFLVQNFKDVDAARSLYASALQQAPGSLSLWEGAIHLE 617
BLAST of mRNA_H-elongata_contig50794.12333.1 vs. uniprot
Match: A0A7J8M6P2_9ROSI (Uncharacterized protein n=2 Tax=Gossypium TaxID=3633 RepID=A0A7J8M6P2_9ROSI) HSP 1 Score: 102 bits (254), Expect = 1.940e-20 Identity = 88/301 (29.24%), Postives = 124/301 (41.20%), Query Frame = 1
Query: 229 SEGSTKAARKERLVKILEDKRKVSLRGRERRESFERRITRPHFHVKPLDDAQLSAWSEFLDFEISQQACGGSGQDDPSLTATASAAGENSMGRKRSRCSKAAAFRGSDVERLFERCLVPCASYWWLWERYALWKESVWGVEAALEVAERACSPFLQWRPEALFFRAELLERVNRTDDARAVYRRVLSEVAPGLVEAACKLACFERRCGDRQAADKAYRLLLPPPLGSSTSAEVAIAGGSWSGWEETTETTRPYLYMQLARFQHRILGDAAAARTTFRAAVADVPSSRELWLAFLEFEAAQP 1131
S GST A E+ V I E+ K + + FE I RP+FH +PL+ A+L W +LDF S E + + V +L+ERCL+ CASY W RY L E+ ++ A RA F++ +PE F A E+ ARA Y+ V +E++PG +EA K A ERR G + A Y + G S T P +Y Q +RF + + G+A AR A+ V S+ A + FE P
Sbjct: 27 SAGSTDAEELEKYVAIREELYKKAKEFNSKILGFETAIRRPYFHARPLNVAELENWHSYLDFIES----------------------EGDLNK---------------VVKLYERCLIACASYPEYWIRYVLCMEASGSMDLADNALARATQLFVKRQPEIHLFAARFKEQNGDIPGARAAYQLVHNEISPGFLEAIIKHANMERRLGKLEDAFSLYEQAIAIEKGKEHSQ------------------TLPMMYAQYSRFSYLVSGNAEKAREILIGALDQVQLSKPFLEAIIYFETILP 272 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50794.12333.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig50794.12333.1 >prot_H-elongata_contig50794.12333.1 ID=prot_H-elongata_contig50794.12333.1|Name=mRNA_H-elongata_contig50794.12333.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=384bp ISRLYERAFGYRLTALEALWAGFRDFVERTSWDNLTPPCTPDAAGKVPQTback to top mRNA from alignment at H-elongata_contig50794:278..3443- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig50794.12333.1 ID=mRNA_H-elongata_contig50794.12333.1|Name=mRNA_H-elongata_contig50794.12333.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3166bp|location=Sequence derived from alignment at H-elongata_contig50794:278..3443- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig50794:278..3443- >mRNA_H-elongata_contig50794.12333.1 ID=mRNA_H-elongata_contig50794.12333.1|Name=mRNA_H-elongata_contig50794.12333.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2304bp|location=Sequence derived from alignment at H-elongata_contig50794:278..3443- (Himanthalia elongata Himel1 dioecious)back to top |