mRNA_H-elongata_contig50763.12327.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig50763.12327.1 vs. uniprot
Match: D8LKT4_ECTSI (DUF202 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKT4_ECTSI) HSP 1 Score: 292 bits (747), Expect = 3.740e-96 Identity = 165/258 (63.95%), Postives = 192/258 (74.42%), Query Frame = 1
Query: 1 INRFAGASDEAISRAIDNALGFPRGSPAVIRDPEDGSALAISDSLPDGLTLDATPVIPAQADALTSIGGGADETSALSRSDDGFHGSAEGGKLLNGNAQGDGADRGDNKGANGRNGGGDTAPSAPGGAQEFRGELLKFERVNAHLANERTWLAWVRTALSVIGVALSLLSLMDDMGTVVMDSLALALGVAFVVCTLFTYMTGWLRYTRVKKVLTWTGSQVKGSFGRFGLQYFTRFLGVSLLLTVPLYLYAGVNIVKDA 774
++ FAGASDEAI+R I+ AL PRG+PAV+RDPEDGSALA+SDSLPDGLT+DAT A+ + GG ++ S +GF+G E G N +A+ D+ G G A EFRGELLKFERVNAHLANERTWLAWVRTALSV+GVALSL+SL DDMG+ MDS A+ALGVAFV CTLFTYMTGWLRYTRVK+VLTWTGSQVKG FGRFGL+YFT FLG SL+LTVP+Y AGVN+V+DA
Sbjct: 31 VSWFAGASDEAITRTIELALRLPRGTPAVVRDPEDGSALAVSDSLPDGLTVDAT--------AVPACSGGDNDRRRAESSGNGFYGRGESGNNKNSDAK----PAHDSAGGIGXXXXXXXXXXXXXAAHEFRGELLKFERVNAHLANERTWLAWVRTALSVLGVALSLISLTDDMGSATMDSTAMALGVAFVACTLFTYMTGWLRYTRVKEVLTWTGSQVKGRFGRFGLKYFTWFLGASLVLTVPVYFIAGVNVVEDA 276
BLAST of mRNA_H-elongata_contig50763.12327.1 vs. uniprot
Match: A0A7S2Y0E1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0E1_9STRA) HSP 1 Score: 133 bits (335), Expect = 1.780e-34 Identity = 96/249 (38.55%), Postives = 129/249 (51.81%), Query Frame = 1
Query: 1 INRFAGASDEAISRAIDNALGFPRGSPAVIRDPEDGSALAISDSLPDGLTLDATPVIPAQADALTSIGGGADETSALSRSDDGFHGSAEGGKLLNGNAQGDGADRGDNKGANGRNGGGDTAPSAPGGAQEFRGELLKFERVNAHLANERTWLAWVRTALSVIGVALSLLSLMDDMGTVVMDSLALALGVAFVVCTLFTYMTGWLRYTRVKKVLTWTGSQVKGSFGRFGLQYFTRFLGVSLLLTVPLYLY 747
I F GA+D ++ R + +A P S ++ DP DG +A+S++LP GL L+ V D T G TSA D G G + GD++ + G+ +FRGELLKFERVNAHLANERT+LAWVRTALSV+ A S+ SL +D + G +VV LFTY TGW+RY++V+ +L S+VK FGRFGL + +FL L T Y +
Sbjct: 24 ITWFPGATDASLHRLVLDAFSLPLHSRFLLVDPADGCIVALSENLPSGLVLNVQHVQTQGRD--TPAKEGQAYTSAREDRDSEKSG---------------GLESGDDESSTGK---------------KFRGELLKFERVNAHLANERTFLAWVRTALSVLSSAFSIDSLTEDFSDGAFKVMVFIFGCLYVVGVLFTYTTGWVRYSQVRAILGLPASKVKAQFGRFGLSHVAKFLAFLFLFTAIGYCF 240
BLAST of mRNA_H-elongata_contig50763.12327.1 vs. uniprot
Match: A0A7S3YD22_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YD22_HETAK) HSP 1 Score: 122 bits (307), Expect = 2.420e-30 Identity = 89/245 (36.33%), Postives = 121/245 (49.39%), Query Frame = 1
Query: 1 INRFAGASDEAISRAIDNALGFPRGSPAVIRDPEDGSALAISDSLPDGLTLDATPVIPAQADALTSIGGGADETSALSRSDDGFHGSAEGGKLLNGNAQGDGADRGDNKGANGRNGGGDTAPSAPGGAQEFRGELLKFERVNAHLANERTWLAWVRTALSVIGVALSLLSLMDDM--GTVVMDSLALALGVAFVVCTLFTYMTGWLRYTRVKKVLTWTGSQVKGSFGRFGLQYFTRFLGVSLLLT 729
I+ + G +DE + + I ++ P + ++ D D + +A+S SLP G+ L P+ D F G + D A GD G G QEF+GELLKFERVNAHLANERTWLAWVRTAL+V+ A + L L +D GT + LG ++ L TY TGWLRY +V+++L GS +K F RFGL + R+L V LL+T
Sbjct: 27 ISWYDGTTDEGLEKLIADSFSLPSKTRFILIDSADNTTIALSSSLPSGIELQIQPL----------------------EGDPSFDEQRRGVLNKKASPDPDEAADGDGSGLQG---------------QEFQGELLKFERVNAHLANERTWLAWVRTALAVLSSAFTFLGLTEDFASGTQIF---VFVLGGFYIGNVLLTYGTGWLRYAQVREILGLPGSMIKPKFNRFGLSHQARYLAVLLLVT 231
BLAST of mRNA_H-elongata_contig50763.12327.1 vs. uniprot
Match: A0A7S2FKJ2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FKJ2_9STRA) HSP 1 Score: 117 bits (292), Expect = 1.150e-28 Identity = 63/107 (58.88%), Postives = 77/107 (71.96%), Query Frame = 1
Query: 391 FRGELLKFERVNAHLANERTWLAWVRTALSVIGVALSLLSLMDDMGTVVMDSLAL-ALGVAFVVCTLFTYMTGWLRYTRVKKVLTWTGSQVKGSFGRFGLQYFTRFL 708
FRG++LKFERV AHLANERTWLAWVRTALS + +A SLL+L DD + LAL +G V LFT++TGWLRY RVK VL T S++ +FGRFGL + RF+
Sbjct: 91 FRGQVLKFERVQAHLANERTWLAWVRTALSALTIAFSLLTLSDDASSA--SQLALFVMGSCMVANVLFTFVTGWLRYVRVKDVLMLTRSEMSENFGRFGLSHQARFM 195
BLAST of mRNA_H-elongata_contig50763.12327.1 vs. uniprot
Match: A0A7S2WVC3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WVC3_9STRA) HSP 1 Score: 115 bits (287), Expect = 1.990e-27 Identity = 65/121 (53.72%), Postives = 79/121 (65.29%), Query Frame = 1
Query: 391 FRGELLKFERVNAHLANERTWLAWVRTALSVIGVALSLLSLMDDMGTVVMDSLALAL---GVAFVVCTLFTYMTGWLRYTRVKKVLTWTGSQVKGSFGRFGLQYFTRFLGVSLLLTVPLYL 744
FRG++LKFERV AHLANERTWLAWVRTAL+ + ++ +LL+L DD D LAL L G VV LFT++TGWLRY RVK VL ++ FGRFGL + RFL L+ YL
Sbjct: 115 FRGQVLKFERVQAHLANERTWLAWVRTALAALSISFTLLTLSDD---ATKDWLALFLFVVGCLMVVNVLFTFITGWLRYVRVKDVLMLRKQEMSDEFGRFGLSHHARFLSALLVAISIAYL 232
BLAST of mRNA_H-elongata_contig50763.12327.1 vs. uniprot
Match: A0A7S2GM95_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GM95_9STRA) HSP 1 Score: 111 bits (277), Expect = 1.720e-26 Identity = 59/121 (48.76%), Postives = 75/121 (61.98%), Query Frame = 1
Query: 391 FRGELLKFERVNAHLANERTWLAWVRTALSVIGVALSLLSLMDDMGTVVMDSLALALGVAFVVCTLFTYMTGWLRYTRVKKVLTWTGSQVKGSFGRFGLQYFTRFLGVSLLLTVPLYLYAG 753
FRG++LKFERV AHLANERTWLAWVRTALS + +A SLL+L D+ + +G V L T++TGWLRY RVK VL + +FGR GL + RFL + L + Y+ G
Sbjct: 67 FRGQVLKFERVQAHLANERTWLAWVRTALSALSIAFSLLTLSDESTKQWLKVTLFVVGSLMVANVLMTFVTGWLRYVRVKDVLMLDKQDMSANFGRLGLSHQARFLSLLLFVISFAYITGG 187
BLAST of mRNA_H-elongata_contig50763.12327.1 vs. uniprot
Match: F0YI70_AURAN (Expressed protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YI70_AURAN) HSP 1 Score: 103 bits (258), Expect = 1.770e-23 Identity = 53/120 (44.17%), Postives = 74/120 (61.67%), Query Frame = 1
Query: 391 FRGELLKFERVNAHLANERTWLAWVRTALSVIGVALSLLSLMDDMGTVVMDSLALALGVAFVVCTLFTYMTGWLRYTRVKKVLTWTGSQVKGSFGRFGLQYFTRFLGVSLLLTVPLYLYA 750
FR +L+KFE + AHLANERTWLAWVRT+LS + VA SLL+L+ D + + LG F+V ++TGWLRY R++ VL T +V F R G+++ R +G+ + YL A
Sbjct: 88 FRKQLIKFENIQAHLANERTWLAWVRTSLSALSVAFSLLTLVGDSRESWLAVVLFLLGSGFIVSVFTAFLTGWLRYARIRDVLMLTKREVPAHFHRIGVRHQARLMGLLFIFLTATYLCA 207
BLAST of mRNA_H-elongata_contig50763.12327.1 vs. uniprot
Match: A0A7S3K4A5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K4A5_9STRA) HSP 1 Score: 99.8 bits (247), Expect = 6.540e-22 Identity = 52/121 (42.98%), Postives = 75/121 (61.98%), Query Frame = 1
Query: 391 FRGELLKFERVNAHLANERTWLAWVRTALSVIGVALSLLSLMDDMGTVVMDSLALALGVAFVVCTLFTYMTGWLRYTRVKKVLTWTGSQVKGSFGRFGLQYFTRFLGVSLLLTVPLYLYAG 753
FR +L+KFE + AHLANERT+LAW+RTAL+ + ++ SLL+L+ D + + ALG AFV T++TGWLR+ R++ +L +QV F R GL + F+ + L LYL G
Sbjct: 82 FRRQLIKFENIQAHLANERTFLAWIRTALASLSISFSLLALVADASKNWLAACLYALGAAFVFSVFTTFLTGWLRFARIRDILMLAQNQVPTDFHRIGLSHQAYFIAILCGLLTFLYLVGG 202
BLAST of mRNA_H-elongata_contig50763.12327.1 vs. uniprot
Match: A0A7S2G4H1_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G4H1_9STRA) HSP 1 Score: 93.2 bits (230), Expect = 1.150e-19 Identity = 51/121 (42.15%), Postives = 73/121 (60.33%), Query Frame = 1
Query: 391 FRGELLKFERVNAHLANERTWLAWVRTALSVIGVALSLLSLMDDMGTVVMDSLALALGVAFVVCTLFTYMTGWLRYTRVKKVLTWTGSQVKGSFGRFGLQYFTRFLGVSLLLTVPLYLYAG 753
F+ ++LKF+R+NAHLANERTWLAW+RT S++ L+L + +D + A+G A +V FTYMTGW+RY +VK++L + GR L+Y T FL L TV + + G
Sbjct: 58 FQKQMLKFDRINAHLANERTWLAWIRTTFSLLSCGLTLQTYANDSSSGTWHWWLFAVGCATIVSMDFTYMTGWIRYGKVKEILQQNKEVLGPKMGRLKLKYQT-FLVFGTLCTVAVVYWMG 177
BLAST of mRNA_H-elongata_contig50763.12327.1 vs. uniprot
Match: A0A7S2DFA2_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DFA2_9STRA) HSP 1 Score: 85.5 bits (210), Expect = 2.240e-16 Identity = 47/125 (37.60%), Postives = 72/125 (57.60%), Query Frame = 1
Query: 388 EFRGELLKFERVNAHLANERTWLAWVRTALSVIGVALSLLSLMDDMGTVVMDSLALAL---GVAFVVCTLFTYMTGWLRYTRVKKVLTWTGSQVKGSFGRFGLQYFTRFLGVSLLLTVPLYLYAG 753
+F+ + +KFERV +HLANERTWLAW+R AL+++ A ++ L D + + +++LAL G+ +V+ T + GWLRY R K +L + + FG G+ LG L+ TV Y G
Sbjct: 98 QFQDQYVKFERVLSHLANERTWLAWIRAALTMLSSAFTIWKLYDSVNDKIHPTISLALYSLGLCYVLVVPLTVVVGWLRYERTKHILGLSKVDIHEYFGSLGVVIQAALLGSVLVFTVGCYWSLG 222 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50763.12327.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 15
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig50763.12327.1 >prot_H-elongata_contig50763.12327.1 ID=prot_H-elongata_contig50763.12327.1|Name=mRNA_H-elongata_contig50763.12327.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=259bp INRFAGASDEAISRAIDNALGFPRGSPAVIRDPEDGSALAISDSLPDGLTback to top mRNA from alignment at H-elongata_contig50763:1404..2240+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig50763.12327.1 ID=mRNA_H-elongata_contig50763.12327.1|Name=mRNA_H-elongata_contig50763.12327.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=837bp|location=Sequence derived from alignment at H-elongata_contig50763:1404..2240+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig50763:1404..2240+ >mRNA_H-elongata_contig50763.12327.1 ID=mRNA_H-elongata_contig50763.12327.1|Name=mRNA_H-elongata_contig50763.12327.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1554bp|location=Sequence derived from alignment at H-elongata_contig50763:1404..2240+ (Himanthalia elongata Himel1 dioecious)back to top |