mRNA_H-elongata_contig50656.12314.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig50656.12314.1
Unique NamemRNA_H-elongata_contig50656.12314.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig50656.12314.1 vs. uniprot
Match: D8LFG5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFG5_ECTSI)

HSP 1 Score: 147 bits (372), Expect = 2.750e-40
Identity = 68/102 (66.67%), Postives = 75/102 (73.53%), Query Frame = 1
Query:    4 LIMSGGEDGTARVMHVQNKRVLGTLNAAHRKIESTCGVIDKRPHTSTSRGSVEAVGFCATHPWVATAGTDGALKVWDSISGTCRHACVHPGAVTRLEWHPAA 309
            L+MSGGEDGTARVMHVQNKRV+GT+                  H     GSVEAVGFCATHPWVAT GTDG +KVWD++SGTCRH C+HP AVTRLEWHPAA
Sbjct:  286 LVMSGGEDGTARVMHVQNKRVVGTM-----------------VHCDAGAGSVEAVGFCATHPWVATGGTDGGMKVWDTVSGTCRHTCLHPAAVTRLEWHPAA 370          
BLAST of mRNA_H-elongata_contig50656.12314.1 vs. uniprot
Match: A0A8K1FMQ3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FMQ3_PYTOL)

HSP 1 Score: 100 bits (248), Expect = 1.100e-22
Identity = 48/105 (45.71%), Postives = 63/105 (60.00%), Query Frame = 1
Query:    1 PLIMSGGEDGTARVMHVQNKRVLGTLNAAHRKIESTCGVIDKRPHTSTSRGSVEAVGFCATHPWVATAGTDGALKVWDSISGTCRHACVHPGAVTRLEWHPAAPV 315
            PLI+ G +DGTAR+M VQ KRV+G  +  H   E+  G ++   H + +  SVE  GFC T  W AT    GAL++WD  +  CRH C HP  VT+L WHP  P+
Sbjct:  253 PLIICGSQDGTARLMQVQTKRVIGIFS--HDVNEALSGTVNSEVHATEN--SVECGGFCNTMNWAATGCLGGALRIWDLSTYQCRHVCQHPAGVTKLLWHPTQPI 353          
BLAST of mRNA_H-elongata_contig50656.12314.1 vs. uniprot
Match: K3WRZ8_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WRZ8_GLOUD)

HSP 1 Score: 98.2 bits (243), Expect = 5.860e-22
Identity = 42/105 (40.00%), Postives = 63/105 (60.00%), Query Frame = 1
Query:    1 PLIMSGGEDGTARVMHVQNKRVLGTLNAAHRKIESTCGVIDKRPHTSTSRGSVEAVGFCATHPWVATAGTDGALKVWDSISGTCRHACVHPGAVTRLEWHPAAPV 315
            PL++SG +DG+A+++ +Q KRVL T +  H + E+T G + ++     +  SVE  GFC T  W AT    G +++WD  +  CRH C HP  V +L WHP  P+
Sbjct:  255 PLMISGSQDGSAKLIQIQAKRVLATFS--HDRNEATAGTVQEQLQDQATENSVECAGFCNTMQWAATGCLGGFVRIWDLSTYQCRHVCQHPAGVIKLMWHPTLPI 357          
BLAST of mRNA_H-elongata_contig50656.12314.1 vs. uniprot
Match: A0A3M6VL09_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VL09_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 1.420e-21
Identity = 47/106 (44.34%), Postives = 64/106 (60.38%), Query Frame = 1
Query:    1 PLIMSGGEDGTARVMHVQNKRVLGTLNAAHRKIE-STCGVIDKRPHTSTSRGSVEAVGFCATHPWVATAGTDGALKVWDSISGTCRHACVHPGAVTRLEWHPAAPV 315
            PL++SG +DGTAR+M VQ KR+L   +  H  I+ S  G ++   ++S +  SVE  GFC T  W AT    G L++WD  +  CRH C HP  V +L WHPA P+
Sbjct:  296 PLVISGSQDGTARLMQVQTKRILAAFS--HEGIDPSVAGTVND--NSSATENSVECGGFCNTMNWAATGCLGGYLRIWDLATNQCRHVCRHPAGVIKLLWHPAQPI 397          
BLAST of mRNA_H-elongata_contig50656.12314.1 vs. uniprot
Match: A0A2D4BFN1_PYTIN (Angio-associated migratory cell protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BFN1_PYTIN)

HSP 1 Score: 97.1 bits (240), Expect = 1.470e-21
Identity = 47/105 (44.76%), Postives = 64/105 (60.95%), Query Frame = 1
Query:    1 PLIMSGGEDGTARVMHVQNKRVLGTLNAAHRKIESTCGVIDKRPHTSTSRGSVEAVGFCATHPWVATAGTDGALKVWDSISGTCRHACVHPGAVTRLEWHPAAPV 315
            PL++ G +DG+AR++ VQ KRVL  L+  H   E+  G I+    T  +  SVE  GFC+T  W ATA   G+L++WD  +  CRH C HP  VT+L WHP  P+
Sbjct:  252 PLLICGSQDGSARLVQVQAKRVLAVLS--HDISEARVGTINSE--TEATANSVECGGFCSTMNWAATACLGGSLRIWDLSTYQCRHVCSHPAGVTKLLWHPTQPI 352          
BLAST of mRNA_H-elongata_contig50656.12314.1 vs. uniprot
Match: H3GXG4_PHYRM (Uncharacterized protein n=25 Tax=Phytophthora TaxID=4783 RepID=H3GXG4_PHYRM)

HSP 1 Score: 96.3 bits (238), Expect = 2.760e-21
Identity = 49/106 (46.23%), Postives = 63/106 (59.43%), Query Frame = 1
Query:    1 PLIMSGGEDGTARVMHVQNKRVLGTLNAAHRKIE-STCGVIDKRPHTSTSRGSVEAVGFCATHPWVATAGTDGALKVWDSISGTCRHACVHPGAVTRLEWHPAAPV 315
            PL +SG +DGTAR++ VQ KRVL TL+  H  I+ S  G ++     + +  SVE  GFC T  W AT    G L++WD  +  CRHAC HP  V +L WHP  PV
Sbjct:  248 PLSLSGSQDGTARLIQVQTKRVLATLS--HDNIDPSVAGTVNDT--ATATENSVECGGFCNTMNWAATGCLGGYLRIWDLATNQCRHACRHPAGVIKLLWHPTQPV 349          
BLAST of mRNA_H-elongata_contig50656.12314.1 vs. uniprot
Match: A0A5D6XV78_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XV78_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 1.120e-20
Identity = 44/106 (41.51%), Postives = 63/106 (59.43%), Query Frame = 1
Query:    1 PLIMSGGEDGTARVMHVQNKRVLGTLNAAHRKIESTCGVIDKRPHTSTS-RGSVEAVGFCATHPWVATAGTDGALKVWDSISGTCRHACVHPGAVTRLEWHPAAPV 315
            PL++SG +DGTA+++ +Q KRVL T +  H + E+T G + +   T  S   SVE  GF  T  W AT    G++++WD  +  CRH C HP  V +L WHP  P+
Sbjct:  261 PLMISGSQDGTAKLLQIQTKRVLATFS--HDRNEATAGTVYEEQKTDNSTENSVECAGFSNTMQWAATGCLGGSVRIWDLSNYHCRHICRHPAGVIKLIWHPTVPI 364          
BLAST of mRNA_H-elongata_contig50656.12314.1 vs. uniprot
Match: A0A421F6J9_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421F6J9_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 2.250e-20
Identity = 46/105 (43.81%), Postives = 61/105 (58.10%), Query Frame = 1
Query:    1 PLIMSGGEDGTARVMHVQNKRVLGTLNAAHRKIESTCGVIDKRPHTSTSRGSVEAVGFCATHPWVATAGTDGALKVWDSISGTCRHACVHPGAVTRLEWHPAAPV 315
            PL +SG +DGTAR++ VQ KRVL TL+  H       G +++    +T+  SVE  GFC T  W AT    G L++WD  +  CRH C HP  V +L WHP  P+
Sbjct:  226 PLTISGSQDGTARLLQVQTKRVLATLS--HDADPILAGTVNET--ATTTENSVECGGFCNTMNWAATGCLGGFLRIWDLATYQCRHICRHPAGVIKLLWHPTQPI 326          
BLAST of mRNA_H-elongata_contig50656.12314.1 vs. uniprot
Match: A0A835YY67_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY67_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 7.730e-20
Identity = 53/131 (40.46%), Postives = 60/131 (45.80%), Query Frame = 1
Query:    4 LIMSGGEDGTARVMHVQNKRVLGT------LNAAHRKIESTCGVIDKRPHTSTSRG----SVEAVGFCATHPWVATAGTDGALKVWDSISGTCRHACVHPGAV------------------TRLEWHPAAP 312
            L++SG EDGTAR++H Q KRVL T      + AA                          SVEAVGFCA  PW AT G DG LK+WD  SG CRH C HP  +                  TRL WHP  P
Sbjct:  281 LVLSGSEDGTARLVHAQTKRVLATFVHSANVAAAXXXXXXXXXXXXXXXXXDAMEAEASFSVEAVGFCAVRPWCATGGADGNLKIWDLQSGLCRHTCRHPAGIXXXXXXXXXXXXXXXXXXTRLRWHPRLP 411          
BLAST of mRNA_H-elongata_contig50656.12314.1 vs. uniprot
Match: A0A0P1B3B7_PLAHL (Angio-associated migratory cell protein (Contains WD40 repeats) n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B3B7_PLAHL)

HSP 1 Score: 90.9 bits (224), Expect = 2.610e-19
Identity = 46/102 (45.10%), Postives = 64/102 (62.75%), Query Frame = 1
Query:    1 PLIMSGGEDGTARVMHVQNKRVLGTLNAAHRKIEST-CGVIDKRPHTSTSRGSVEAVGFCATHPWVATAGTDGALKVWDSISGTCRHACVHPGAVTRLEWHP 303
            P+++SG +DGTAR++ VQ KRVL TL+  H  ++ST  G +++   T ++  SVE  GFC T  W AT    G L++WD  +  CRH C HP  V +L WHP
Sbjct:  250 PVMLSGSQDGTARLIQVQTKRVLATLS--HDGVDSTIAGSVNEV--TVSTNNSVECGGFCNTMNWAATGCLGGFLRIWDLTTYHCRHVCRHPAGVIKLLWHP 347          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50656.12314.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFG5_ECTSI2.750e-4066.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A8K1FMQ3_PYTOL1.100e-2245.71Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3WRZ8_GLOUD5.860e-2240.00Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A3M6VL09_9STRA1.420e-2144.34Uncharacterized protein n=2 Tax=Peronospora effusa... [more]
A0A2D4BFN1_PYTIN1.470e-2144.76Angio-associated migratory cell protein n=1 Tax=Py... [more]
H3GXG4_PHYRM2.760e-2146.23Uncharacterized protein n=25 Tax=Phytophthora TaxI... [more]
A0A5D6XV78_9STRA1.120e-2041.51Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A421F6J9_9STRA2.250e-2043.81Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A835YY67_9STRA7.730e-2040.46WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
A0A0P1B3B7_PLAHL2.610e-1945.10Angio-associated migratory cell protein (Contains ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig50656contigH-elongata_contig50656:400..1141 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score146.0
Seed ortholog evalue9.8e-33
Seed eggNOG ortholog2880.D8LFG5
KEGG koko:K14818
EggNOG free text desc.smooth muscle cell migration
EggNOG OGsKOG0296@1,KOG0296@2759
COG Functional cat.IQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionWD40/YVTN repeat-like-containing domain
Ec32 orthologEc-04_002260.1
Exons3
Model size315
Cds size306
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig50656.12314.1prot_H-elongata_contig50656.12314.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig50656 409..1141 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930831.9891145-UTR-H-elongata_contig50656:399..4081622930831.9891145-UTR-H-elongata_contig50656:399..408Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig50656 400..408 +
1691679589.4989436-UTR-H-elongata_contig50656:399..4081691679589.4989436-UTR-H-elongata_contig50656:399..408Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig50656 400..408 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930832.0163383-CDS-H-elongata_contig50656:408..4771622930832.0163383-CDS-H-elongata_contig50656:408..477Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50656 409..477 +
1691679589.5205379-CDS-H-elongata_contig50656:408..4771691679589.5205379-CDS-H-elongata_contig50656:408..477Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50656 409..477 +
1622930832.0332515-CDS-H-elongata_contig50656:623..6951622930832.0332515-CDS-H-elongata_contig50656:623..695Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50656 624..695 +
1691679589.5308528-CDS-H-elongata_contig50656:623..6951691679589.5308528-CDS-H-elongata_contig50656:623..695Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50656 624..695 +
1622930832.0512025-CDS-H-elongata_contig50656:976..11411622930832.0512025-CDS-H-elongata_contig50656:976..1141Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50656 977..1141 +
1691679589.5416331-CDS-H-elongata_contig50656:976..11411691679589.5416331-CDS-H-elongata_contig50656:976..1141Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50656 977..1141 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig50656.12314.1

>prot_H-elongata_contig50656.12314.1 ID=prot_H-elongata_contig50656.12314.1|Name=mRNA_H-elongata_contig50656.12314.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp
MSGGEDGTARVMHVQNKRVLGTLNAAHRKIESTCGVIDKRPHTSTSRGSV
EAVGFCATHPWVATAGTDGALKVWDSISGTCRHACVHPGAVTRLEWHPAA
PV
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mRNA from alignment at H-elongata_contig50656:400..1141+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig50656.12314.1 ID=mRNA_H-elongata_contig50656.12314.1|Name=mRNA_H-elongata_contig50656.12314.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=742bp|location=Sequence derived from alignment at H-elongata_contig50656:400..1141+ (Himanthalia elongata Himel1 dioecious)
CCCCTGATCATGTCTGGCGGCGAGGACGGTACCGCCCGAGTGATGCACGT GCAAAACAAGCGCGTGCTCGGGACCTTGGTACACTGCGCCGCGGGCGAGG TAGGTTCTGGTTGGTTAAGCCAAGCGTTTCGTGGTGCGTTGATGCGGTAC TGATGCAGCGTTTCGAGATTAGGTTTGGTGGAGGCGCGCAGCGCTAAGCA GAAGAGTGTCAGTTGGGAGAAGAGAATGCGGCGCATCGCAAAATAGAGTC AACGTGTGGTGTCATCGACAAACGCCCGCACACCAGCACCTCGCGTGTGT AGCAAAATGATAAATAGCACGTTTTTTGTACCGCCCTTGTTCAAAAGTTT ACTTTTTTTGCTGCCAGCTAGTCGTTGGGAGACTAAAGGCCCTCAAAATG CCTCAAACATGCATAACGTGGTTTGAAGCGTTAACTCGTAGTTAGTGTTA TCTAGTTTTGTCGTTTGGTCATGTTTCCATCGAGCTAGCTCCACATTAGG CTGCACGGGGCATATCCCCGGAACCCTTTATGTTGTTGATGTTGCTTTGC CGTTAATGCGTAATCCTACTCACTCAGGGATCTGTCGAAGCAGTAGGATT CTGCGCAACCCACCCCTGGGTCGCGACGGCAGGCACGGACGGAGCGCTGA AAGTTTGGGACTCAATTTCGGGAACATGCAGGCACGCGTGCGTGCACCCC GGGGCGGTGACGAGGCTCGAGTGGCATCCGGCGGCTCCGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig50656:400..1141+

>mRNA_H-elongata_contig50656.12314.1 ID=mRNA_H-elongata_contig50656.12314.1|Name=mRNA_H-elongata_contig50656.12314.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=612bp|location=Sequence derived from alignment at H-elongata_contig50656:400..1141+ (Himanthalia elongata Himel1 dioecious)
ATGTCTGGCGGCGAGGACGGTACCGCCCGAGTGATGCACGTGCAAAACAA
GCGCGTGCTCGGGACCTTGATGTCTGGCGGCGAGGACGGTACCGCCCGAG
TGATGCACGTGCAAAACAAGCGCGTGCTCGGGACCTTGAATGCGGCGCAT
CGCAAAATAGAGTCAACGTGTGGTGTCATCGACAAACGCCCGCACACCAG
CACCTCGCGTAATGCGGCGCATCGCAAAATAGAGTCAACGTGTGGTGTCA
TCGACAAACGCCCGCACACCAGCACCTCGCGTGGATCTGTCGAAGCAGTA
GGATTCTGCGCAACCCACCCCTGGGTCGCGACGGCAGGCACGGACGGAGC
GCTGAAAGTTTGGGACTCAATTTCGGGAACATGCAGGCACGCGTGCGTGC
ACCCCGGGGCGGTGACGAGGCTCGAGTGGCATCCGGCGGCTCCGGTGGGA
TCTGTCGAAGCAGTAGGATTCTGCGCAACCCACCCCTGGGTCGCGACGGC
AGGCACGGACGGAGCGCTGAAAGTTTGGGACTCAATTTCGGGAACATGCA
GGCACGCGTGCGTGCACCCCGGGGCGGTGACGAGGCTCGAGTGGCATCCG
GCGGCTCCGGTG
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