mRNA_H-elongata_contig50656.12314.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig50656.12314.1 vs. uniprot
Match: D8LFG5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFG5_ECTSI) HSP 1 Score: 147 bits (372), Expect = 2.750e-40 Identity = 68/102 (66.67%), Postives = 75/102 (73.53%), Query Frame = 1
Query: 4 LIMSGGEDGTARVMHVQNKRVLGTLNAAHRKIESTCGVIDKRPHTSTSRGSVEAVGFCATHPWVATAGTDGALKVWDSISGTCRHACVHPGAVTRLEWHPAA 309
L+MSGGEDGTARVMHVQNKRV+GT+ H GSVEAVGFCATHPWVAT GTDG +KVWD++SGTCRH C+HP AVTRLEWHPAA
Sbjct: 286 LVMSGGEDGTARVMHVQNKRVVGTM-----------------VHCDAGAGSVEAVGFCATHPWVATGGTDGGMKVWDTVSGTCRHTCLHPAAVTRLEWHPAA 370
BLAST of mRNA_H-elongata_contig50656.12314.1 vs. uniprot
Match: A0A8K1FMQ3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FMQ3_PYTOL) HSP 1 Score: 100 bits (248), Expect = 1.100e-22 Identity = 48/105 (45.71%), Postives = 63/105 (60.00%), Query Frame = 1
Query: 1 PLIMSGGEDGTARVMHVQNKRVLGTLNAAHRKIESTCGVIDKRPHTSTSRGSVEAVGFCATHPWVATAGTDGALKVWDSISGTCRHACVHPGAVTRLEWHPAAPV 315
PLI+ G +DGTAR+M VQ KRV+G + H E+ G ++ H + + SVE GFC T W AT GAL++WD + CRH C HP VT+L WHP P+
Sbjct: 253 PLIICGSQDGTARLMQVQTKRVIGIFS--HDVNEALSGTVNSEVHATEN--SVECGGFCNTMNWAATGCLGGALRIWDLSTYQCRHVCQHPAGVTKLLWHPTQPI 353
BLAST of mRNA_H-elongata_contig50656.12314.1 vs. uniprot
Match: K3WRZ8_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WRZ8_GLOUD) HSP 1 Score: 98.2 bits (243), Expect = 5.860e-22 Identity = 42/105 (40.00%), Postives = 63/105 (60.00%), Query Frame = 1
Query: 1 PLIMSGGEDGTARVMHVQNKRVLGTLNAAHRKIESTCGVIDKRPHTSTSRGSVEAVGFCATHPWVATAGTDGALKVWDSISGTCRHACVHPGAVTRLEWHPAAPV 315
PL++SG +DG+A+++ +Q KRVL T + H + E+T G + ++ + SVE GFC T W AT G +++WD + CRH C HP V +L WHP P+
Sbjct: 255 PLMISGSQDGSAKLIQIQAKRVLATFS--HDRNEATAGTVQEQLQDQATENSVECAGFCNTMQWAATGCLGGFVRIWDLSTYQCRHVCQHPAGVIKLMWHPTLPI 357
BLAST of mRNA_H-elongata_contig50656.12314.1 vs. uniprot
Match: A0A3M6VL09_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VL09_9STRA) HSP 1 Score: 97.4 bits (241), Expect = 1.420e-21 Identity = 47/106 (44.34%), Postives = 64/106 (60.38%), Query Frame = 1
Query: 1 PLIMSGGEDGTARVMHVQNKRVLGTLNAAHRKIE-STCGVIDKRPHTSTSRGSVEAVGFCATHPWVATAGTDGALKVWDSISGTCRHACVHPGAVTRLEWHPAAPV 315
PL++SG +DGTAR+M VQ KR+L + H I+ S G ++ ++S + SVE GFC T W AT G L++WD + CRH C HP V +L WHPA P+
Sbjct: 296 PLVISGSQDGTARLMQVQTKRILAAFS--HEGIDPSVAGTVND--NSSATENSVECGGFCNTMNWAATGCLGGYLRIWDLATNQCRHVCRHPAGVIKLLWHPAQPI 397
BLAST of mRNA_H-elongata_contig50656.12314.1 vs. uniprot
Match: A0A2D4BFN1_PYTIN (Angio-associated migratory cell protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BFN1_PYTIN) HSP 1 Score: 97.1 bits (240), Expect = 1.470e-21 Identity = 47/105 (44.76%), Postives = 64/105 (60.95%), Query Frame = 1
Query: 1 PLIMSGGEDGTARVMHVQNKRVLGTLNAAHRKIESTCGVIDKRPHTSTSRGSVEAVGFCATHPWVATAGTDGALKVWDSISGTCRHACVHPGAVTRLEWHPAAPV 315
PL++ G +DG+AR++ VQ KRVL L+ H E+ G I+ T + SVE GFC+T W ATA G+L++WD + CRH C HP VT+L WHP P+
Sbjct: 252 PLLICGSQDGSARLVQVQAKRVLAVLS--HDISEARVGTINSE--TEATANSVECGGFCSTMNWAATACLGGSLRIWDLSTYQCRHVCSHPAGVTKLLWHPTQPI 352
BLAST of mRNA_H-elongata_contig50656.12314.1 vs. uniprot
Match: H3GXG4_PHYRM (Uncharacterized protein n=25 Tax=Phytophthora TaxID=4783 RepID=H3GXG4_PHYRM) HSP 1 Score: 96.3 bits (238), Expect = 2.760e-21 Identity = 49/106 (46.23%), Postives = 63/106 (59.43%), Query Frame = 1
Query: 1 PLIMSGGEDGTARVMHVQNKRVLGTLNAAHRKIE-STCGVIDKRPHTSTSRGSVEAVGFCATHPWVATAGTDGALKVWDSISGTCRHACVHPGAVTRLEWHPAAPV 315
PL +SG +DGTAR++ VQ KRVL TL+ H I+ S G ++ + + SVE GFC T W AT G L++WD + CRHAC HP V +L WHP PV
Sbjct: 248 PLSLSGSQDGTARLIQVQTKRVLATLS--HDNIDPSVAGTVNDT--ATATENSVECGGFCNTMNWAATGCLGGYLRIWDLATNQCRHACRHPAGVIKLLWHPTQPV 349
BLAST of mRNA_H-elongata_contig50656.12314.1 vs. uniprot
Match: A0A5D6XV78_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XV78_9STRA) HSP 1 Score: 94.7 bits (234), Expect = 1.120e-20 Identity = 44/106 (41.51%), Postives = 63/106 (59.43%), Query Frame = 1
Query: 1 PLIMSGGEDGTARVMHVQNKRVLGTLNAAHRKIESTCGVIDKRPHTSTS-RGSVEAVGFCATHPWVATAGTDGALKVWDSISGTCRHACVHPGAVTRLEWHPAAPV 315
PL++SG +DGTA+++ +Q KRVL T + H + E+T G + + T S SVE GF T W AT G++++WD + CRH C HP V +L WHP P+
Sbjct: 261 PLMISGSQDGTAKLLQIQTKRVLATFS--HDRNEATAGTVYEEQKTDNSTENSVECAGFSNTMQWAATGCLGGSVRIWDLSNYHCRHICRHPAGVIKLIWHPTVPI 364
BLAST of mRNA_H-elongata_contig50656.12314.1 vs. uniprot
Match: A0A421F6J9_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421F6J9_9STRA) HSP 1 Score: 93.6 bits (231), Expect = 2.250e-20 Identity = 46/105 (43.81%), Postives = 61/105 (58.10%), Query Frame = 1
Query: 1 PLIMSGGEDGTARVMHVQNKRVLGTLNAAHRKIESTCGVIDKRPHTSTSRGSVEAVGFCATHPWVATAGTDGALKVWDSISGTCRHACVHPGAVTRLEWHPAAPV 315
PL +SG +DGTAR++ VQ KRVL TL+ H G +++ +T+ SVE GFC T W AT G L++WD + CRH C HP V +L WHP P+
Sbjct: 226 PLTISGSQDGTARLLQVQTKRVLATLS--HDADPILAGTVNET--ATTTENSVECGGFCNTMNWAATGCLGGFLRIWDLATYQCRHICRHPAGVIKLLWHPTQPI 326
BLAST of mRNA_H-elongata_contig50656.12314.1 vs. uniprot
Match: A0A835YY67_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY67_9STRA) HSP 1 Score: 92.8 bits (229), Expect = 7.730e-20 Identity = 53/131 (40.46%), Postives = 60/131 (45.80%), Query Frame = 1
Query: 4 LIMSGGEDGTARVMHVQNKRVLGT------LNAAHRKIESTCGVIDKRPHTSTSRG----SVEAVGFCATHPWVATAGTDGALKVWDSISGTCRHACVHPGAV------------------TRLEWHPAAP 312
L++SG EDGTAR++H Q KRVL T + AA SVEAVGFCA PW AT G DG LK+WD SG CRH C HP + TRL WHP P
Sbjct: 281 LVLSGSEDGTARLVHAQTKRVLATFVHSANVAAAXXXXXXXXXXXXXXXXXDAMEAEASFSVEAVGFCAVRPWCATGGADGNLKIWDLQSGLCRHTCRHPAGIXXXXXXXXXXXXXXXXXXTRLRWHPRLP 411
BLAST of mRNA_H-elongata_contig50656.12314.1 vs. uniprot
Match: A0A0P1B3B7_PLAHL (Angio-associated migratory cell protein (Contains WD40 repeats) n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B3B7_PLAHL) HSP 1 Score: 90.9 bits (224), Expect = 2.610e-19 Identity = 46/102 (45.10%), Postives = 64/102 (62.75%), Query Frame = 1
Query: 1 PLIMSGGEDGTARVMHVQNKRVLGTLNAAHRKIEST-CGVIDKRPHTSTSRGSVEAVGFCATHPWVATAGTDGALKVWDSISGTCRHACVHPGAVTRLEWHP 303
P+++SG +DGTAR++ VQ KRVL TL+ H ++ST G +++ T ++ SVE GFC T W AT G L++WD + CRH C HP V +L WHP
Sbjct: 250 PVMLSGSQDGTARLIQVQTKRVLATLS--HDGVDSTIAGSVNEV--TVSTNNSVECGGFCNTMNWAATGCLGGFLRIWDLTTYHCRHVCRHPAGVIKLLWHP 347 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50656.12314.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig50656.12314.1 >prot_H-elongata_contig50656.12314.1 ID=prot_H-elongata_contig50656.12314.1|Name=mRNA_H-elongata_contig50656.12314.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp MSGGEDGTARVMHVQNKRVLGTLNAAHRKIESTCGVIDKRPHTSTSRGSVback to top mRNA from alignment at H-elongata_contig50656:400..1141+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig50656.12314.1 ID=mRNA_H-elongata_contig50656.12314.1|Name=mRNA_H-elongata_contig50656.12314.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=742bp|location=Sequence derived from alignment at H-elongata_contig50656:400..1141+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig50656:400..1141+ >mRNA_H-elongata_contig50656.12314.1 ID=mRNA_H-elongata_contig50656.12314.1|Name=mRNA_H-elongata_contig50656.12314.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=612bp|location=Sequence derived from alignment at H-elongata_contig50656:400..1141+ (Himanthalia elongata Himel1 dioecious)back to top |