mRNA_H-elongata_contig50644.12313.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig50644.12313.1
Unique NamemRNA_H-elongata_contig50644.12313.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig50644.12313.1 vs. uniprot
Match: D7G301_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G301_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 2.760e-19
Identity = 49/110 (44.55%), Postives = 69/110 (62.73%), Query Frame = 1 
Query:    1 TSFVNNTCGANGGAMSLIQSSSVFFDSDQIIFSGNSAGISGGAVFLEDSEIRTILRNVLFLENSAQGGGGVYAMASGQVD--------NPTTFDNCNFTRNVASTTGGAV 306
            T+FVNNTCGANGGA++L+   +V   ++ + F GN+A ++GGAVF+  +    I     F+ NSAQ GG V  + SG +         NPTTFD+C+F  N A+ TGGA+
Sbjct:  561 TAFVNNTCGANGGALALLGGLAVNIGTENVSFIGNAAEVAGGAVFVSGTGFGPIFTGARFISNSAQVGGAVSTVGSGNLKENADISPPNPTTFDHCHFIDNRATATGGAI 670
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BLAST of mRNA_H-elongata_contig50644.12313.1 vs. uniprot
Match: D7FHG7_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHG7_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 6.330e-18
Identity = 50/109 (45.87%), Postives = 68/109 (62.39%), Query Frame = 1 
Query:    1 TSFVNNTCGANGGAMSLIQSSSVFFDSDQIIFSGNSAGISGGAVFLEDSEIRTILRNVLFLENSAQGGGGVYAMASGQVDN-------PTTFDNCNFTRNVASTTGGAV 306
            T+FVNNT G NGGA++L+   S+  ++++  F  NSA ++GGAV++ D+ I     +V+F  NSAQ GG V A+ SG V         PTTF  C FT N A+ TGGAV
Sbjct: 2238 TAFVNNTSGENGGALALLGGLSISVNTEETNFVDNSADLAGGAVYVSDTAIGPTFSDVIFDSNSAQVGGAVSALGSGNVKGGENDQLLPTTFSRCRFTFNRATATGGAV 2346
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BLAST of mRNA_H-elongata_contig50644.12313.1 vs. uniprot
Match: D7FHH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHH1_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 2.130e-17
Identity = 49/109 (44.95%), Postives = 67/109 (61.47%), Query Frame = 1 
Query:    1 TSFVNNTCGANGGAMSLIQSSSVFFDSDQIIFSGNSAGISGGAVFLEDSEIRTILRNVLFLENSAQGGGGVYAMASGQVDN-------PTTFDNCNFTRNVASTTGGAV 306
            T+FVNNT G NGGA++L+   S+  ++ +  F  NSA ++GGAV++ D+ I     +V+F  NSAQ GG V ++ SG V         PTTF  C FT N A+ TGGAV
Sbjct:  325 TAFVNNTSGENGGALALLGGLSISVNTGETSFVDNSANLAGGAVYVSDTAIGPTFSDVIFDSNSAQVGGAVSSLGSGNVKGGENDQLLPTTFSRCRFTFNRATATGGAV 433
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BLAST of mRNA_H-elongata_contig50644.12313.1 vs. uniprot
Match: D8LSC0_ECTSI (Polymorphic Outer membrane protein G/I family n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LSC0_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 2.460e-13
Identity = 44/111 (39.64%), Postives = 62/111 (55.86%), Query Frame = 1 
Query:    1 TSFVNNTCGANGGAMSLIQSSSVFFD-SDQIIFSGNSAGISGGAVFLEDSEIRTILRNVLFLENSAQGGGGVYAMASG--------QVDNPTTFDNCNFTRNVASTTGGAV 306
            TSF NN CG NGGA++L+ +  +  + +  + F+ N+A ++GGAVF+  +       N  F  NSAQ GG V    SG        +  NPTTF+ C F  N A+ TGGA+
Sbjct:  914 TSFFNNACGGNGGAVTLLGACDLVVNPAASVRFTENAAAVAGGAVFVSGAGAGPAFANTTFTSNSAQVGGAVAVFGSGNSKGVADIEPPNPTTFERCWFVGNRATATGGAI 1024
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50644.12313.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G301_ECTSI2.760e-1944.55Polymorphic Outer membrane protein G/I family n=1 ... [more]
D7FHG7_ECTSI6.330e-1845.87LNR domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FHH1_ECTSI2.130e-1744.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LSC0_ECTSI2.460e-1339.64Polymorphic Outer membrane protein G/I family n=3 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig50644contigH-elongata_contig50644:32..337 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.4
Seed ortholog evalue1.3e-16
Seed eggNOG ortholog2880.D7G301
EggNOG OGs2BFIX@1,2S176@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size306
Cds size306
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930831.9304378-CDS-H-elongata_contig50644:31..3371622930831.9304378-CDS-H-elongata_contig50644:31..337Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50644 32..337 +
1691679589.4855075-CDS-H-elongata_contig50644:31..3371691679589.4855075-CDS-H-elongata_contig50644:31..337Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50644 32..337 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig50644.12313.1prot_H-elongata_contig50644.12313.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig50644 32..337 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig50644.12313.1

>prot_H-elongata_contig50644.12313.1 ID=prot_H-elongata_contig50644.12313.1|Name=mRNA_H-elongata_contig50644.12313.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp
TSFVNNTCGANGGAMSLIQSSSVFFDSDQIIFSGNSAGISGGAVFLEDSE
IRTILRNVLFLENSAQGGGGVYAMASGQVDNPTTFDNCNFTRNVASTTGG
AV
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mRNA from alignment at H-elongata_contig50644:32..337+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig50644.12313.1 ID=mRNA_H-elongata_contig50644.12313.1|Name=mRNA_H-elongata_contig50644.12313.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=306bp|location=Sequence derived from alignment at H-elongata_contig50644:32..337+ (Himanthalia elongata Himel1 dioecious)
ACTAGCTTTGTAAACAACACGTGCGGGGCCAATGGGGGAGCAATGTCATT
GATACAATCGTCATCCGTCTTCTTCGATAGTGACCAAATAATATTTTCGG
GAAATTCTGCCGGGATTTCGGGAGGAGCCGTGTTTTTAGAAGATTCAGAG
ATCAGGACCATTCTTAGGAACGTCCTTTTCCTGGAAAATTCTGCCCAAGG
CGGTGGTGGTGTGTACGCCATGGCAAGTGGACAAGTGGATAATCCGACGA
CGTTCGACAATTGCAACTTTACACGCAACGTTGCTTCCACGACCGGTGGG
GCCGTC
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Coding sequence (CDS) from alignment at H-elongata_contig50644:32..337+

>mRNA_H-elongata_contig50644.12313.1 ID=mRNA_H-elongata_contig50644.12313.1|Name=mRNA_H-elongata_contig50644.12313.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=612bp|location=Sequence derived from alignment at H-elongata_contig50644:32..337+ (Himanthalia elongata Himel1 dioecious)
ACTAGCTTTGTAAACAACACGTGCGGGGCCAATGGGGGAGCAATGTCATT
GATACAATCGTCATCCGTCTTCTTCGATAGTGACCAAATAATATTTTCGG
GAAATTCTGCCGGGATTTCGGGAGGAGCCGTGTTTTTAGAAGATTCAGAG
ATCAGGACCATTCTTAGGAACGTCCTTTTCCTGGAAAATTCTGCCCAAGG
CGGTGGTGGTGTGTACGCCATGGCAAGTGGACAAGTGGATAATCCGACGA
CGTTCGACAATTGCAACTTTACACGCAACGTTGCTTCCACGACCGGTGGG
GCCGTCACTAGCTTTGTAAACAACACGTGCGGGGCCAATGGGGGAGCAAT
GTCATTGATACAATCGTCATCCGTCTTCTTCGATAGTGACCAAATAATAT
TTTCGGGAAATTCTGCCGGGATTTCGGGAGGAGCCGTGTTTTTAGAAGAT
TCAGAGATCAGGACCATTCTTAGGAACGTCCTTTTCCTGGAAAATTCTGC
CCAAGGCGGTGGTGGTGTGTACGCCATGGCAAGTGGACAAGTGGATAATC
CGACGACGTTCGACAATTGCAACTTTACACGCAACGTTGCTTCCACGACC
GGTGGGGCCGTC
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