mRNA_H-elongata_contig50573.12307.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig50573.12307.1
Unique NamemRNA_H-elongata_contig50573.12307.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig50573.12307.1 vs. uniprot
Match: A0A6H5JW60_9PHAE (Ald_Xan_dh_C2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW60_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 4.000e-30
Identity = 57/66 (86.36%), Postives = 63/66 (95.45%), Query Frame = 1
Query:    1 QVVCRTKRLGGGFGGKETRSVFLSCVAALGARLTGRPVRLSLDRDVDMQITGHRHAFLARYRAGAS 198
            +VVCRTKR+GGGFGGKETRSVFLSCVAALGA LT RPVR+ LDRDVDMQITGHRHAFLA+Y+AGA+
Sbjct:   52 KVVCRTKRMGGGFGGKETRSVFLSCVAALGAHLTKRPVRICLDRDVDMQITGHRHAFLAKYKAGAT 117          
BLAST of mRNA_H-elongata_contig50573.12307.1 vs. uniprot
Match: D7G4V3_ECTSI (Xanthine dehydrogenase n=3 Tax=Ectocarpus TaxID=2879 RepID=D7G4V3_ECTSI)

HSP 1 Score: 117 bits (293), Expect = 4.430e-29
Identity = 55/66 (83.33%), Postives = 62/66 (93.94%), Query Frame = 1
Query:    1 QVVCRTKRLGGGFGGKETRSVFLSCVAALGARLTGRPVRLSLDRDVDMQITGHRHAFLARYRAGAS 198
            +VVCRTKR+GG FGGKETRS+FLSCVAALGA LT RPVR+ LDRDVDMQITGHRHAFLA+Y+AGA+
Sbjct:  940 KVVCRTKRMGGAFGGKETRSIFLSCVAALGAHLTKRPVRICLDRDVDMQITGHRHAFLAKYKAGAT 1005          
BLAST of mRNA_H-elongata_contig50573.12307.1 vs. uniprot
Match: W7TFQ7_9STRA (Xanthine dehydrogenase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TFQ7_9STRA)

HSP 1 Score: 108 bits (270), Expect = 5.670e-26
Identity = 52/65 (80.00%), Postives = 57/65 (87.69%), Query Frame = 1
Query:    1 QVVCRTKRLGGGFGGKETRSVFLSCVAALGARLTGRPVRLSLDRDVDMQITGHRHAFLARYRAGA 195
            +VVCR KR+GGGFGGKETRSVF+SC AAL A LT RPVR+SLDRDVDM ITG RHAFLARY+A A
Sbjct:  905 RVVCRMKRMGGGFGGKETRSVFISCTAALAAHLTQRPVRISLDRDVDMHITGQRHAFLARYKAAA 969          
BLAST of mRNA_H-elongata_contig50573.12307.1 vs. uniprot
Match: A0A836C8N1_9STRA (Xanthine dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8N1_9STRA)

HSP 1 Score: 107 bits (266), Expect = 1.970e-25
Identity = 50/65 (76.92%), Postives = 56/65 (86.15%), Query Frame = 1
Query:    4 VVCRTKRLGGGFGGKETRSVFLSCVAALGARLTGRPVRLSLDRDVDMQITGHRHAFLARYRAGAS 198
            VVCR KR+GGGFGGKETRSVF+SC AAL A +TGRPV + LDRDVDMQ TG RHAF A+Y+AGAS
Sbjct:  824 VVCRMKRMGGGFGGKETRSVFISCAAALAAHVTGRPVNIMLDRDVDMQTTGQRHAFTAKYKAGAS 888          
BLAST of mRNA_H-elongata_contig50573.12307.1 vs. uniprot
Match: B8CFF5_THAPS (FAD-binding PCMH-type domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CFF5_THAPS)

HSP 1 Score: 96.7 bits (239), Expect = 8.790e-22
Identity = 47/65 (72.31%), Postives = 55/65 (84.62%), Query Frame = 1
Query:    1 QVVCRTKRLGGGFGGKETRSVFLSCVAALGARLTGRPVRLSLDRDVDMQITGHRHAFLARYRAGA 195
            +VV R KR+GGGFGGKETRSVF+S  AA+ A+LT RPVRL+L+RD DM ITG RHAFLA Y+AGA
Sbjct:  757 KVVVRMKRMGGGFGGKETRSVFVSVAAAVAAKLTNRPVRLTLNRDTDMSITGGRHAFLAHYKAGA 821          
BLAST of mRNA_H-elongata_contig50573.12307.1 vs. uniprot
Match: A0A7S1ER10_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1ER10_9RHOD)

HSP 1 Score: 96.7 bits (239), Expect = 8.790e-22
Identity = 43/65 (66.15%), Postives = 55/65 (84.62%), Query Frame = 1
Query:    1 QVVCRTKRLGGGFGGKETRSVFLSCVAALGARLTGRPVRLSLDRDVDMQITGHRHAFLARYRAGA 195
            ++VCRTKR+GGGFGGKETR++F+SC  A+ A   G+PVRL L+RDVDM I+G RHAFLA+Y+A A
Sbjct:  826 RIVCRTKRIGGGFGGKETRNMFMSCAVAVAANKLGKPVRLVLERDVDMAISGQRHAFLAKYKAAA 890          
BLAST of mRNA_H-elongata_contig50573.12307.1 vs. uniprot
Match: A0A7S3VF44_9STRA (Hypothetical protein n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VF44_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 8.800e-22
Identity = 44/65 (67.69%), Postives = 58/65 (89.23%), Query Frame = 1
Query:    1 QVVCRTKRLGGGFGGKETRSVFLSCVAALGARLTGRPVRLSLDRDVDMQITGHRHAFLARYRAGA 195
            +VV + KR+GGGFGGKETRSVF+SC A++ A+++ RPVRL+LDR+VDMQITG RHAF+A+Y+A A
Sbjct:  942 KVVVKMKRMGGGFGGKETRSVFVSCAASVAAKISDRPVRLTLDRNVDMQITGTRHAFMAKYKASA 1006          
BLAST of mRNA_H-elongata_contig50573.12307.1 vs. uniprot
Match: A0A5B8MMF7_9CHLO (Xanthine dehydrogenase n=2 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MMF7_9CHLO)

HSP 1 Score: 95.9 bits (237), Expect = 1.640e-21
Identity = 44/64 (68.75%), Postives = 53/64 (82.81%), Query Frame = 1
Query:    1 QVVCRTKRLGGGFGGKETRSVFLSCVAALGARLTGRPVRLSLDRDVDMQITGHRHAFLARYRAG 192
            +VVC+TKRLGGGFGGKETR++F++C AA+ A    RPVRL LDRD DMQITGHRHAF  +Y+ G
Sbjct:  809 KVVCKTKRLGGGFGGKETRAIFINCAAAVPAYDLQRPVRLCLDRDEDMQITGHRHAFYGKYKVG 872          
BLAST of mRNA_H-elongata_contig50573.12307.1 vs. uniprot
Match: A0A6B2LQM0_9EUKA (Ald_Xan_dh_C2 domain-containing protein (Fragment) n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LQM0_9EUKA)

HSP 1 Score: 88.6 bits (218), Expect = 2.860e-21
Identity = 40/64 (62.50%), Postives = 51/64 (79.69%), Query Frame = 1
Query:    1 QVVCRTKRLGGGFGGKETRSVFLSCVAALGARLTGRPVRLSLDRDVDMQITGHRHAFLARYRAG 192
            ++V + KRLGGGFGGKETRS+F+SC AA+ A+   +PV+L LDRD DMQITG RH FL +Y+ G
Sbjct:    7 KIVIKVKRLGGGFGGKETRSIFMSCAAAVAAKKVQKPVKLVLDRDDDMQITGGRHPFLGKYKVG 70          
BLAST of mRNA_H-elongata_contig50573.12307.1 vs. uniprot
Match: A0A7S3XDZ6_9CHLO (Hypothetical protein n=1 Tax=Picocystis salinarum TaxID=88271 RepID=A0A7S3XDZ6_9CHLO)

HSP 1 Score: 94.7 bits (234), Expect = 4.170e-21
Identity = 44/62 (70.97%), Postives = 52/62 (83.87%), Query Frame = 1
Query:    1 QVVCRTKRLGGGFGGKETRSVFLSCVAALGARLTGRPVRLSLDRDVDMQITGHRHAFLARYR 186
            +VVCRTKR+GGGFGGKETRS +++C AA+ A L  RPVRL LDRD DMQ +GHRHAFL RY+
Sbjct:  816 KVVCRTKRIGGGFGGKETRSFYVACAAAVPAYLLKRPVRLCLDRDEDMQTSGHRHAFLCRYK 877          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50573.12307.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JW60_9PHAE4.000e-3086.36Ald_Xan_dh_C2 domain-containing protein n=1 Tax=Ec... [more]
D7G4V3_ECTSI4.430e-2983.33Xanthine dehydrogenase n=3 Tax=Ectocarpus TaxID=28... [more]
W7TFQ7_9STRA5.670e-2680.00Xanthine dehydrogenase n=2 Tax=Monodopsidaceae Tax... [more]
A0A836C8N1_9STRA1.970e-2576.92Xanthine dehydrogenase n=1 Tax=Tribonema minus Tax... [more]
B8CFF5_THAPS8.790e-2272.31FAD-binding PCMH-type domain-containing protein n=... [more]
A0A7S1ER10_9RHOD8.790e-2266.15Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A7S3VF44_9STRA8.800e-2267.69Hypothetical protein n=2 Tax=Chaetoceros debilis T... [more]
A0A5B8MMF7_9CHLO1.640e-2168.75Xanthine dehydrogenase n=2 Tax=Chloropicon primus ... [more]
A0A6B2LQM0_9EUKA2.860e-2162.50Ald_Xan_dh_C2 domain-containing protein (Fragment)... [more]
A0A7S3XDZ6_9CHLO4.170e-2170.97Hypothetical protein n=1 Tax=Picocystis salinarum ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig50573contigH-elongata_contig50573:917..1120 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score119.0
Seed ortholog evalue8.5e-25
Seed eggNOG ortholog2880.D7G4V2
KEGG rclassRC00143,RC02017,RC02199
KEGG koko:K00106
KEGG ReactionR01768,R01769,R02103,R02107,R07942,R07977,R07978,R07979,R08235
KEGG Pathwayko00230,ko00232,ko00983,ko01100,ko01110,ko01120,ko04146,map00230,map00232,map00983,map01100,map01110,map01120,map04146
KEGG ModuleM00546
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004854,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006144,GO:0006145,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009112,GO:0009115,GO:0009987,GO:0016491,GO:0016725,GO:0016726,GO:0016903,GO:0019439,GO:0034641,GO:0036094,GO:0043167,GO:0043168,GO:0043546,GO:0044237,GO:0044238,GO:0044248,GO:0044270,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046110,GO:0046113,GO:0046483,GO:0046700,GO:0048037,GO:0050660,GO:0050662,GO:0051536,GO:0051537,GO:0051540,GO:0055086,GO:0055114,GO:0071704,GO:0072521,GO:0072523,GO:0097159,GO:1901265,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901565,GO:1901575
EggNOG free text desc.Xanthine dehydrogenase
EggNOG OGsCOG4631@1,KOG0430@2759
EC1.17.1.4,1.17.3.2
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Hectar predicted targeting categoryother localisation
Exons1
Model size204
Cds size204
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930831.5108876-CDS-H-elongata_contig50573:916..11201622930831.5108876-CDS-H-elongata_contig50573:916..1120Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50573 917..1120 -
1691679589.2911236-CDS-H-elongata_contig50573:916..11201691679589.2911236-CDS-H-elongata_contig50573:916..1120Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50573 917..1120 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig50573.12307.1prot_H-elongata_contig50573.12307.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig50573 917..1120 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig50573.12307.1

>prot_H-elongata_contig50573.12307.1 ID=prot_H-elongata_contig50573.12307.1|Name=mRNA_H-elongata_contig50573.12307.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=68bp
QVVCRTKRLGGGFGGKETRSVFLSCVAALGARLTGRPVRLSLDRDVDMQI
TGHRHAFLARYRAGAST*
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mRNA from alignment at H-elongata_contig50573:917..1120-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig50573.12307.1 ID=mRNA_H-elongata_contig50573.12307.1|Name=mRNA_H-elongata_contig50573.12307.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=204bp|location=Sequence derived from alignment at H-elongata_contig50573:917..1120- (Himanthalia elongata Himel1 dioecious)
CAGGTAGTCTGCAGGACGAAGCGCTTGGGCGGCGGCTTCGGGGGTAAGGA AACCCGATCGGTGTTTCTTTCCTGTGTGGCCGCGCTCGGCGCCCGCTTGA CCGGGAGGCCAGTGCGCCTTAGCCTCGATAGAGACGTGGACATGCAGATT ACCGGACATCGGCACGCCTTCCTTGCCAGATACAGGGCGGGAGCGTCCAC GTGA
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Coding sequence (CDS) from alignment at H-elongata_contig50573:917..1120-

>mRNA_H-elongata_contig50573.12307.1 ID=mRNA_H-elongata_contig50573.12307.1|Name=mRNA_H-elongata_contig50573.12307.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=408bp|location=Sequence derived from alignment at H-elongata_contig50573:917..1120- (Himanthalia elongata Himel1 dioecious)
CAGGTAGTCTGCAGGACGAAGCGCTTGGGCGGCGGCTTCGGGGGTAAGGA
AACCCGATCGGTGTTTCTTTCCTGTGTGGCCGCGCTCGGCGCCCGCTTGA
CCGGGAGGCCAGTGCGCCTTAGCCTCGATAGAGACGTGGACATGCAGATT
ACCGGACATCGGCACGCCTTCCTTGCCAGATACAGGGCGGGAGCGTCCAC
GTGACAGGTAGTCTGCAGGACGAAGCGCTTGGGCGGCGGCTTCGGGGGTA
AGGAAACCCGATCGGTGTTTCTTTCCTGTGTGGCCGCGCTCGGCGCCCGC
TTGACCGGGAGGCCAGTGCGCCTTAGCCTCGATAGAGACGTGGACATGCA
GATTACCGGACATCGGCACGCCTTCCTTGCCAGATACAGGGCGGGAGCGT
CCACGTGA
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