mRNA_H-elongata_contig50550.12303.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig50550.12303.1 vs. uniprot
Match: D7G111_ECTSI (Glycine/D-amino acid oxidase-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G111_ECTSI) HSP 1 Score: 181 bits (458), Expect = 3.530e-54 Identity = 87/112 (77.68%), Postives = 98/112 (87.50%), Query Frame = 1
Query: 1 GHPDAVDTFCPDVLNTGVKPSLLVERARQRFEGKGGIVMEFTSIDGVSVRPDGVVVATSPFAPPGEEAKAEREA--RQVTSRLVLDCMGNASPLVQQVRWGNKPEGVCLVVG 330
G PDAVDTFCPDVLNTGVKPSLLV+RAR+RFE KGG+VMEFTSIDGVSVRPDGV ++TSP +PPG + A A +VTSRLVLDCMGNASP+V+Q+RWG KPEGVCLVVG
Sbjct: 143 GDPDAVDTFCPDVLNTGVKPSLLVDRARRRFEAKGGVVMEFTSIDGVSVRPDGVALSTSPSSPPGGKPPASGAATGEEVTSRLVLDCMGNASPMVRQIRWGKKPEGVCLVVG 254
BLAST of mRNA_H-elongata_contig50550.12303.1 vs. uniprot
Match: A0A6H5L433_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L433_9PHAE) HSP 1 Score: 177 bits (448), Expect = 4.890e-50 Identity = 85/112 (75.89%), Postives = 96/112 (85.71%), Query Frame = 1
Query: 1 GHPDAVDTFCPDVLNTGVKPSLLVERARQRFEGKGGIVMEFTSIDGVSVRPDGVVVATSPFAPPGEE--AKAEREARQVTSRLVLDCMGNASPLVQQVRWGNKPEGVCLVVG 330
G P AVDTFCPDVLNTGVKPSLLV+RAR+RFE KGG+VMEFTSIDGVSVRPDGV ++TSP +PPG + A +VTSRLVLDCMGNASP+V+Q+RWG KPEGVCLVVG
Sbjct: 241 GDPGAVDTFCPDVLNTGVKPSLLVDRARRRFETKGGVVMEFTSIDGVSVRPDGVALSTSPSSPPGSKPPASGAGTGEEVTSRLVLDCMGNASPMVRQIRWGKKPEGVCLVVG 352
BLAST of mRNA_H-elongata_contig50550.12303.1 vs. uniprot
Match: A0A836CJX3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJX3_9STRA) HSP 1 Score: 138 bits (348), Expect = 2.220e-39 Identity = 69/112 (61.61%), Postives = 82/112 (73.21%), Query Frame = 1
Query: 1 GHPDAVDTFCPDVLNTGVKPSLLVERARQRFEGKGGIVMEFTSIDGVSVRPDG--VVVATSPFAPPGEEAKAEREARQVTSRLVLDCMGNASPLVQQVRWGNKPEGVCLVVG 330
G P+ VDTFCPDVLN GVKPS++V+RAR RFE GG+VME +I GVSVRP+G V VAT P P VT+RLVLDCMGN SP+V+Q+RWG KP+G+CLVVG
Sbjct: 10 GDPNGVDTFCPDVLNLGVKPSVMVQRARARFEAAGGVVMEQAAISGVSVRPNGASVAVATGPADKP--------VTSNVTARLVLDCMGNGSPMVRQIRWGRKPDGMCLVVG 113
BLAST of mRNA_H-elongata_contig50550.12303.1 vs. uniprot
Match: A0A7S0KT21_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0KT21_MICPS) HSP 1 Score: 114 bits (286), Expect = 1.980e-27 Identity = 57/99 (57.58%), Postives = 72/99 (72.73%), Query Frame = 1
Query: 34 DVLNTGVKPSLLVERARQRFEGKGGIVMEFTSIDGVSVRPDGVVVATSPFAPPGEEAKAEREARQVTSRLVLDCMGNASPLVQQVRWGNKPEGVCLVVG 330
D+LNTGVKPSLL++ R FE KGG+V+E T+I G+SVRPDG + TSP G + +T+RLV+DCMG ASP+V+Q RWG KP+GVCLVVG
Sbjct: 224 DILNTGVKPSLLLDAIRGNFEAKGGVVLEKTAISGISVRPDGAELDTSPLD--GGDGPGG-----ITARLVVDCMGFASPIVRQARWGQKPDGVCLVVG 315
BLAST of mRNA_H-elongata_contig50550.12303.1 vs. uniprot
Match: A0A5P8NA30_DUNSA (Lycopene cyclase family protein CruP n=2 Tax=Dunaliella TaxID=3044 RepID=A0A5P8NA30_DUNSA) HSP 1 Score: 106 bits (265), Expect = 1.440e-24 Identity = 50/110 (45.45%), Postives = 69/110 (62.73%), Query Frame = 1
Query: 1 GHPDAVDTFCPDVLNTGVKPSLLVERARQRFEGKGGIVMEFTSIDGVSVRPDGVVVATSPFAPPGEEAKAEREARQVTSRLVLDCMGNASPLVQQVRWGNKPEGVCLVVG 330
G P + D + DVLN GV+P LL+ R R + E GG V E ++ GV V P+G ++ K + +V SRLV+DCMG+ASP+VQQ+RWG KP+G+C+VVG
Sbjct: 221 GKPQSKDVWTRDVLNCGVRPDLLIARMRSKLEALGGKVYELAALQGVQVAPNGCTLSLKSMD------KGSETSMRVHSRLVIDCMGHASPIVQQIRWGKKPDGICIVVG 324
BLAST of mRNA_H-elongata_contig50550.12303.1 vs. uniprot
Match: A0A7S1UCL5_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UCL5_9STRA) HSP 1 Score: 103 bits (257), Expect = 7.350e-24 Identity = 54/110 (49.09%), Postives = 73/110 (66.36%), Query Frame = 1
Query: 1 GHPDAVDTFCPDVLNTGVKPSLLVERARQRFEGKGGIVMEFTSIDGVSVRPDGVVVATSPFAPPGEEAKAEREARQVTSRLVLDCMGNASPLVQQVRWGNKPEGVCLVVG 330
G PD + + P+VLN GV+PS+ V+RAR+ FE GG+VME +++ + V G +V A PGEE + R+VT RLV+D MGNASP+ +Q+R G KP GVC VVG
Sbjct: 246 GDPDNQEVWVPEVLNMGVRPSVAVQRARENFEAAGGVVMEEVNVENIDVYGMGNIVNV---AVPGEE-----KPRRVTCRLVVDAMGNASPIARQIRGGEKPFGVCAVVG 347
BLAST of mRNA_H-elongata_contig50550.12303.1 vs. uniprot
Match: A0A383W046_TETOB (Uncharacterized protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383W046_TETOB) HSP 1 Score: 104 bits (259), Expect = 8.860e-24 Identity = 58/120 (48.33%), Postives = 72/120 (60.00%), Query Frame = 1
Query: 1 GHPDAVDTFCPDVLNTGVKPSLLVERARQRFEGKGGIVMEFTSIDGVSVRPDGV-VVATSPFAPPGEEAKAE---------REARQVTSRLVLDCMGNASPLVQQVRWGNKPEGVCLVVG 330
G D + DVLN GVKP +LV RQ+ E GG V E + GV V DGV +V TS P G A A + A +T+RL+LDCMG+ASP+V+Q+RWG KP+GVCLVVG
Sbjct: 157 GFHGGADVWTRDVLNLGVKPDMLVSLMRQKLEAAGGKVYEEVQLGGVEVLSDGVSLVVTSQTVPGGAAAAAGDAQSSGTRVQYASSITTRLLLDCMGHASPVVRQLRWGKKPDGVCLVVG 276
BLAST of mRNA_H-elongata_contig50550.12303.1 vs. uniprot
Match: A0A7S1XX57_9STRA (Hypothetical protein n=3 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XX57_9STRA) HSP 1 Score: 103 bits (257), Expect = 1.720e-23 Identity = 54/110 (49.09%), Postives = 73/110 (66.36%), Query Frame = 1
Query: 1 GHPDAVDTFCPDVLNTGVKPSLLVERARQRFEGKGGIVMEFTSIDGVSVRPDGVVVATSPFAPPGEEAKAEREARQVTSRLVLDCMGNASPLVQQVRWGNKPEGVCLVVG 330
G PD + + P+VLN GV+PS+ V+RAR+ FE GG+VME +++ + V G +V A PGEE + R+VT RLV+D MGNASP+ +Q+R G KP GVC VVG
Sbjct: 246 GDPDNQEVWVPEVLNMGVRPSVAVQRARENFEAAGGVVMEEVNVENIDVYGMGNIVNV---AVPGEE-----KPRRVTCRLVVDAMGNASPIARQIRGGEKPFGVCAVVG 347
BLAST of mRNA_H-elongata_contig50550.12303.1 vs. uniprot
Match: A0A8J9RAY4_9CHLO (Uncharacterized protein n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RAY4_9CHLO) HSP 1 Score: 103 bits (256), Expect = 2.260e-23 Identity = 48/110 (43.64%), Postives = 69/110 (62.73%), Query Frame = 1
Query: 19 DTFCPDVLNTGVKPSLLVERARQRFEGKGGIVMEFTSIDGVSVRPDGVVV------ATSPFAPPGEEAKAEREARQVTSRLVLDCMGNASPLVQQVRWGNKPEGVCLVVG 330
D + DVLN GV+P L+ + +QRFE GG V+E T +GV+V P+G+ + A G + ++ +T RL++DCMGN SP+V+Q RWG +P+GVCLVVG
Sbjct: 203 DVWTRDVLNLGVRPDKLIAKVKQRFEAAGGTVLELTGAEGVAVHPNGIFLDIPTNDKVQAQASNGSQQESAAGGAGITGRLLIDCMGNFSPIVRQARWGQRPDGVCLVVG 312
BLAST of mRNA_H-elongata_contig50550.12303.1 vs. uniprot
Match: A0A5J4Y8J5_9CHLO (Uncharacterized protein n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y8J5_9CHLO) HSP 1 Score: 102 bits (253), Expect = 5.600e-23 Identity = 49/110 (44.55%), Postives = 68/110 (61.82%), Query Frame = 1
Query: 1 GHPDAVDTFCPDVLNTGVKPSLLVERARQRFEGKGGIVMEFTSIDGVSVRPDGVVVATSPFAPPGEEAKAEREARQVTSRLVLDCMGNASPLVQQVRWGNKPEGVCLVVG 330
G + + + DVLN GVKP +L+ + R +FE GG V E T GV V PDGV + + + + VT +L++DCMGN SP+V+QVRWG+KP+GVC+VVG
Sbjct: 211 GFHGSQEVWTRDVLNLGVKPDMLIAKMRHKFEAAGGKVFERTVAQGVRVHPDGVAL------------QLQADQHDVTGQLIIDCMGNFSPIVRQVRWGHKPDGVCMVVG 308 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50550.12303.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig50550.12303.1 >prot_H-elongata_contig50550.12303.1 ID=prot_H-elongata_contig50550.12303.1|Name=mRNA_H-elongata_contig50550.12303.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=110bp GHPDAVDTFCPDVLNTGVKPSLLVERARQRFEGKGGIVMEFTSIDGVSVRback to top mRNA from alignment at H-elongata_contig50550:1630..3655+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig50550.12303.1 ID=mRNA_H-elongata_contig50550.12303.1|Name=mRNA_H-elongata_contig50550.12303.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2026bp|location=Sequence derived from alignment at H-elongata_contig50550:1630..3655+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig50550:1630..3655+ >mRNA_H-elongata_contig50550.12303.1 ID=mRNA_H-elongata_contig50550.12303.1|Name=mRNA_H-elongata_contig50550.12303.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=660bp|location=Sequence derived from alignment at H-elongata_contig50550:1630..3655+ (Himanthalia elongata Himel1 dioecious)back to top |