mRNA_H-elongata_contig50549.12302.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig50549.12302.1
Unique NamemRNA_H-elongata_contig50549.12302.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50549.12302.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig50549contigH-elongata_contig50549:3671..4063 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEsV-1-7 domain protein
Ec32 orthologEc-00_007710.1
Exons1
Model size393
Cds size372
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930831.0431607-UTR-H-elongata_contig50549:3670..36911622930831.0431607-UTR-H-elongata_contig50549:3670..3691Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig50549 3671..3691 +
1691679589.1133974-UTR-H-elongata_contig50549:3670..36911691679589.1133974-UTR-H-elongata_contig50549:3670..3691Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig50549 3671..3691 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930831.0578704-CDS-H-elongata_contig50549:3691..40631622930831.0578704-CDS-H-elongata_contig50549:3691..4063Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50549 3692..4063 +
1691679589.1241164-CDS-H-elongata_contig50549:3691..40631691679589.1241164-CDS-H-elongata_contig50549:3691..4063Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50549 3692..4063 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig50549.12302.1prot_H-elongata_contig50549.12302.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig50549 3692..4063 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig50549.12302.1

>prot_H-elongata_contig50549.12302.1 ID=prot_H-elongata_contig50549.12302.1|Name=mRNA_H-elongata_contig50549.12302.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=124bp
MSGMINVVSPRCHHLSCTRGPSYGHDGDRKATFCSGHRLLGMVNVVSPRC
VENGCMKGPSYGFEGRRASLCAKHKRDGMLNVVSPRCLELSCIRGPSYAL
PGDRKPLFCAKHKQDKMINVMTRK
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mRNA from alignment at H-elongata_contig50549:3671..4063+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig50549.12302.1 ID=mRNA_H-elongata_contig50549.12302.1|Name=mRNA_H-elongata_contig50549.12302.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=393bp|location=Sequence derived from alignment at H-elongata_contig50549:3671..4063+ (Himanthalia elongata Himel1 dioecious)
GTGTTTTGCGCGGGCCATCGAATGTCAGGCATGATCAACGTCGTGAGCCC
GAGGTGCCACCACCTGAGTTGCACGCGAGGGCCGTCGTATGGTCACGATG
GCGATCGAAAGGCCACCTTCTGTTCTGGTCATCGGCTGCTTGGGATGGTG
AACGTCGTCAGCCCCCGCTGCGTGGAGAACGGGTGCATGAAGGGGCCTTC
TTACGGATTTGAGGGAAGGCGCGCTTCGCTCTGCGCCAAGCACAAGCGGG
ACGGCATGCTGAACGTAGTCAGCCCGCGCTGCCTAGAGCTATCCTGCATC
CGAGGGCCCAGCTACGCGCTGCCCGGCGACCGAAAGCCTTTGTTTTGCGC
CAAACACAAACAAGATAAGATGATAAACGTGATGACCCGAAAG
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Coding sequence (CDS) from alignment at H-elongata_contig50549:3671..4063+

>mRNA_H-elongata_contig50549.12302.1 ID=mRNA_H-elongata_contig50549.12302.1|Name=mRNA_H-elongata_contig50549.12302.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=744bp|location=Sequence derived from alignment at H-elongata_contig50549:3671..4063+ (Himanthalia elongata Himel1 dioecious)
ATGTCAGGCATGATCAACGTCGTGAGCCCGAGGTGCCACCACCTGAGTTG
CACGCGAGGGCCGTCGTATGGTCACGATGGCGATCGAAAGGCCACCTTCT
GTTCTGGTCATCGGCTGCTTGGGATGGTGAACGTCGTCAGCCCCCGCTGC
GTGGAGAACGGGTGCATGAAGGGGCCTTCTTACGGATTTGAGGGAAGGCG
CGCTTCGCTCTGCGCCAAGCACAAGCGGGACGGCATGCTGAACGTAGTCA
GCCCGCGCTGCCTAGAGCTATCCTGCATCCGAGGGCCCAGCTACGCGCTG
CCCGGCGACCGAAAGCCTTTGTTTTGCGCCAAACACAAACAAGATAAGAT
GATAAACGTGATGACCCGAAAGATGTCAGGCATGATCAACGTCGTGAGCC
CGAGGTGCCACCACCTGAGTTGCACGCGAGGGCCGTCGTATGGTCACGAT
GGCGATCGAAAGGCCACCTTCTGTTCTGGTCATCGGCTGCTTGGGATGGT
GAACGTCGTCAGCCCCCGCTGCGTGGAGAACGGGTGCATGAAGGGGCCTT
CTTACGGATTTGAGGGAAGGCGCGCTTCGCTCTGCGCCAAGCACAAGCGG
GACGGCATGCTGAACGTAGTCAGCCCGCGCTGCCTAGAGCTATCCTGCAT
CCGAGGGCCCAGCTACGCGCTGCCCGGCGACCGAAAGCCTTTGTTTTGCG
CCAAACACAAACAAGATAAGATGATAAACGTGATGACCCGAAAG
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