mRNA_H-elongata_contig50529.12299.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig50529.12299.1
Unique NamemRNA_H-elongata_contig50529.12299.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig50529.12299.1 vs. uniprot
Match: D7FJP9_ECTSI (Rab8D, RAB family GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJP9_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 4.200e-22
Identity = 45/49 (91.84%), Postives = 47/49 (95.92%), Query Frame = 1 
Query:    1 MIGDSSVGKTSLVLRYDNRGFNRQFTTTIGVDYSDRLLELDGRQVKLQV 147
            MIGDSSVGKTSLVLRYD RGFN +FTTTIGVDYSDRLLELDGRQVKLQ+
Sbjct:   24 MIGDSSVGKTSLVLRYDKRGFNLRFTTTIGVDYSDRLLELDGRQVKLQI 72
[Close]
BLAST of mRNA_H-elongata_contig50529.12299.1 vs. uniprot
Match: A0A836CM00_9STRA (Rab8D, rab family GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM00_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 7.900e-20
Identity = 39/49 (79.59%), Postives = 46/49 (93.88%), Query Frame = 1 
Query:    1 MIGDSSVGKTSLVLRYDNRGFNRQFTTTIGVDYSDRLLELDGRQVKLQV 147
            MIG+SSVGKTSLVLRYD RGFN +FTTTIGVDYSDR+L +DG+Q+KLQ+
Sbjct:    1 MIGESSVGKTSLVLRYDKRGFNSKFTTTIGVDYSDRMLTIDGKQIKLQI 49
[Close]
BLAST of mRNA_H-elongata_contig50529.12299.1 vs. uniprot
Match: A0A835YM14_9STRA (Rab8D, rab family GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM14_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 2.770e-18
Identity = 39/49 (79.59%), Postives = 44/49 (89.80%), Query Frame = 1 
Query:    1 MIGDSSVGKTSLVLRYDNRGFNRQFTTTIGVDYSDRLLELDGRQVKLQV 147
            MIG+SSVGKTSLVLRYD RGFN +FTTTIGVDYSDR+L +D R VKLQ+
Sbjct:   28 MIGESSVGKTSLVLRYDKRGFNAKFTTTIGVDYSDRMLTVDARAVKLQI 76
[Close]
BLAST of mRNA_H-elongata_contig50529.12299.1 vs. uniprot
Match: Q6T1H1_FUCDI (Putative Rab GTPase (Fragment) n=1 Tax=Fucus distichus TaxID=3012 RepID=Q6T1H1_FUCDI)

HSP 1 Score: 73.2 bits (178), Expect = 2.570e-16
Identity = 35/39 (89.74%), Postives = 36/39 (92.31%), Query Frame = 1 
Query:   31 SLVLRYDNRGFNRQFTTTIGVDYSDRLLELDGRQVKLQV 147
            SLVLRYDNRGFNRQF TTIGVDYSDRLLELDG  VKLQ+
Sbjct:    1 SLVLRYDNRGFNRQFATTIGVDYSDRLLELDGPTVKLQI 39
[Close]
BLAST of mRNA_H-elongata_contig50529.12299.1 vs. uniprot
Match: A0A6V1KKE1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1KKE1_HETAK)

HSP 1 Score: 75.9 bits (185), Expect = 1.140e-15
Identity = 34/49 (69.39%), Postives = 44/49 (89.80%), Query Frame = 1 
Query:    1 MIGDSSVGKTSLVLRYDNRGFNRQFTTTIGVDYSDRLLELDGRQVKLQV 147
            M+GDSSVGKTSLV+R+D++GF  ++ TTIGVDYSDRL+E+DG + KLQV
Sbjct:   18 MVGDSSVGKTSLVMRFDDKGFLNKYATTIGVDYSDRLVEVDGDEYKLQV 66
[Close]
BLAST of mRNA_H-elongata_contig50529.12299.1 vs. uniprot
Match: A0A7S2AY15_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2AY15_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 1.120e-13
Identity = 31/49 (63.27%), Postives = 41/49 (83.67%), Query Frame = 1 
Query:    1 MIGDSSVGKTSLVLRYDNRGFNRQFTTTIGVDYSDRLLELDGRQVKLQV 147
            MIGDS VGKTSLVLRYD   F+ +F TTIGVDY D++++++G+ VKLQ+
Sbjct:   23 MIGDSGVGKTSLVLRYDEDAFSHKFVTTIGVDYRDKVVQVNGKSVKLQI 71
[Close]
BLAST of mRNA_H-elongata_contig50529.12299.1 vs. uniprot
Match: A0A7S2SVP5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SVP5_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 3.650e-13
Identity = 31/49 (63.27%), Postives = 40/49 (81.63%), Query Frame = 1 
Query:    1 MIGDSSVGKTSLVLRYDNRGFNRQFTTTIGVDYSDRLLELDGRQVKLQV 147
            MIGDS+VGKTSLVLRYD   F+ +F TTIGVDY D+++++ G  VKLQ+
Sbjct:   17 MIGDSNVGKTSLVLRYDENRFSHKFVTTIGVDYRDKVVDIHGANVKLQI 65
[Close]
BLAST of mRNA_H-elongata_contig50529.12299.1 vs. uniprot
Match: F0Y0T6_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y0T6_AURAN)

HSP 1 Score: 65.9 bits (159), Expect = 7.550e-12
Identity = 30/49 (61.22%), Postives = 39/49 (79.59%), Query Frame = 1 
Query:    1 MIGDSSVGKTSLVLRYDNRGFNRQFTTTIGVDYSDRLLELDGRQVKLQV 147
            MIGDSSVGKTSLV+RYD   F+ ++ TTIGVDY D+ + +D + VKLQ+
Sbjct:   14 MIGDSSVGKTSLVVRYDEDTFSTKYMTTIGVDYRDKFVTIDDQNVKLQI 62
[Close]
BLAST of mRNA_H-elongata_contig50529.12299.1 vs. uniprot
Match: A0A7S3K6D1_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K6D1_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 1.960e-11
Identity = 29/49 (59.18%), Postives = 40/49 (81.63%), Query Frame = 1 
Query:    1 MIGDSSVGKTSLVLRYDNRGFNRQFTTTIGVDYSDRLLELDGRQVKLQV 147
            MIGDS+VGKTSL+LRY N  F+  F TTIG+D+  + ++LDG++VKLQ+
Sbjct:   17 MIGDSAVGKTSLLLRYANDTFSSTFITTIGIDFKIKTIDLDGKRVKLQI 65
[Close]
BLAST of mRNA_H-elongata_contig50529.12299.1 vs. uniprot
Match: F0YC52_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YC52_AURAN)

HSP 1 Score: 64.3 bits (155), Expect = 2.190e-11
Identity = 29/49 (59.18%), Postives = 40/49 (81.63%), Query Frame = 1 
Query:    1 MIGDSSVGKTSLVLRYDNRGFNRQFTTTIGVDYSDRLLELDGRQVKLQV 147
            MIGDS+VGKTSL+LRY N  F+  F TTIG+D+  + ++LDG++VKLQ+
Sbjct:   18 MIGDSAVGKTSLLLRYANDTFSSTFITTIGIDFKIKTVDLDGKRVKLQI 66
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50529.12299.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJP9_ECTSI4.200e-2291.84Rab8D, RAB family GTPase n=2 Tax=Ectocarpus TaxID=... [more]
A0A836CM00_9STRA7.900e-2079.59Rab8D, rab family GTPase n=1 Tax=Tribonema minus T... [more]
A0A835YM14_9STRA2.770e-1879.59Rab8D, rab family GTPase n=1 Tax=Tribonema minus T... [more]
Q6T1H1_FUCDI2.570e-1689.74Putative Rab GTPase (Fragment) n=1 Tax=Fucus disti... [more]
A0A6V1KKE1_HETAK1.140e-1569.39Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2AY15_9STRA1.120e-1363.27Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S2SVP5_9STRA3.650e-1363.27Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
F0Y0T6_AURAN7.550e-1261.22Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S3K6D1_9STRA1.960e-1159.18Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
F0YC52_AURAN2.190e-1159.18Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig50529contigH-elongata_contig50529:2130..2276 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.8
Seed ortholog evalue4.7e-17
Seed eggNOG ortholog2880.D7FJP9
KEGG koko:K07901
KEGG Pathwayko04144,ko04152,ko04530,ko04972,map04144,map04152,map04530,map04972
EggNOG free text desc.GTPase activity
EggNOG OGsKOG0078@1,KOG0078@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04031,ko04131,ko04147
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionRab8D, RAB family GTPase
Ec32 orthologEc-06_010670.1
Exons1
Model size147
Cds size147
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930830.7737339-CDS-H-elongata_contig50529:2129..22761622930830.7737339-CDS-H-elongata_contig50529:2129..2276Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50529 2130..2276 +
1691679589.0140228-CDS-H-elongata_contig50529:2129..22761691679589.0140228-CDS-H-elongata_contig50529:2129..2276Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50529 2130..2276 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig50529.12299.1prot_H-elongata_contig50529.12299.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig50529 2130..2276 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig50529.12299.1

>prot_H-elongata_contig50529.12299.1 ID=prot_H-elongata_contig50529.12299.1|Name=mRNA_H-elongata_contig50529.12299.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=49bp
MIGDSSVGKTSLVLRYDNRGFNRQFTTTIGVDYSDRLLELDGRQVKLQV
back to top

mRNA from alignment at H-elongata_contig50529:2130..2276+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig50529.12299.1 ID=mRNA_H-elongata_contig50529.12299.1|Name=mRNA_H-elongata_contig50529.12299.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=147bp|location=Sequence derived from alignment at H-elongata_contig50529:2130..2276+ (Himanthalia elongata Himel1 dioecious)
ATGATAGGGGACAGCTCGGTAGGGAAAACGTCGTTGGTGCTTCGGTACGA
CAATCGCGGGTTTAACCGGCAGTTTACGACTACCATTGGGGTGGACTACA
GCGATCGACTGTTGGAGCTAGACGGCCGACAGGTCAAGCTTCAGGTA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig50529:2130..2276+

>mRNA_H-elongata_contig50529.12299.1 ID=mRNA_H-elongata_contig50529.12299.1|Name=mRNA_H-elongata_contig50529.12299.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=294bp|location=Sequence derived from alignment at H-elongata_contig50529:2130..2276+ (Himanthalia elongata Himel1 dioecious)
ATGATAGGGGACAGCTCGGTAGGGAAAACGTCGTTGGTGCTTCGGTACGA
CAATCGCGGGTTTAACCGGCAGTTTACGACTACCATTGGGGTGGACTACA
GCGATCGACTGTTGGAGCTAGACGGCCGACAGGTCAAGCTTCAGGTAATG
ATAGGGGACAGCTCGGTAGGGAAAACGTCGTTGGTGCTTCGGTACGACAA
TCGCGGGTTTAACCGGCAGTTTACGACTACCATTGGGGTGGACTACAGCG
ATCGACTGTTGGAGCTAGACGGCCGACAGGTCAAGCTTCAGGTA
back to top