mRNA_H-elongata_contig50520.12297.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig50520.12297.1 vs. uniprot
Match: A0A6H5KKG8_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKG8_9PHAE) HSP 1 Score: 147 bits (371), Expect = 2.610e-38 Identity = 90/212 (42.45%), Postives = 118/212 (55.66%), Query Frame = 1
Query: 1 LENMMTAIVEVCAAFGLKVSENKTMTMNMRPPTMKAEAVAVEAVGQRYSQFDTFVYLGSTISRVGNIGPEIKRRTGYAWNCFLKYSRAVYDNPYIAVADKVRFLKAKVLEVMLYGCVTWILSPGDFDKLREAHRGMLLRCLNAYTSTQATPDYRMLSYLEVLLRTDCA-CIEAAVMKR-ILHYAGRVVRIHDDRLPNIVMRGEMVGGKKKRG 630
LE MM+ IV V FGL VSE KT M M P ++ V A GQ Y Q D FVYLG TIS G EI R+ AW C+ + S ++YD K+R L+A+V+E +LYGC +W L+ + KL HR L RC+ S + D R LSY + L++ C IEA V KR +L +AG V+R+ D RLP ++ M GG + RG
Sbjct: 161 LEKMMSVIVRVAGLFGLMVSEPKTEIMCMLPKGIEERPFTVSAAGQTYKQTDRFVYLGRTISADGKADREITSRSCRAWKCYRRNSASMYDRRRADRQLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIG--WSKRKRSD-RPLSYAQALIQAGCEETIEATVCKRRLLCFAGFVMRMEDSRLPKRMLLAAMAGGVEYRG 369
BLAST of mRNA_H-elongata_contig50520.12297.1 vs. uniprot
Match: A0A6H5JGW6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGW6_9PHAE) HSP 1 Score: 128 bits (322), Expect = 7.940e-30 Identity = 85/233 (36.48%), Postives = 118/233 (50.64%), Query Frame = 1
Query: 85 MRPPTMKAEAVAVEAVGQRYSQFDTFVYLGSTISRVGNIGPEIKRRTGYAWNCFLKYSRAVYDNPYIAVADKVRFLKAKVLEVMLYGCVTWILSPGDFDKLREAHRGMLLRCLNAYTSTQATPDYRMLSYLEVLLRTDCA-CIEAAVMKRILHYAGRVVRIHDDRLPNIVMRGEMVGGKKKRGQPAKRLKRRVMKYCTAFGIDPKC----WMRAAQDAPEWYRKVETGAEAFM 768
M P ++ V GQ Y Q D FVYLG TIS EI R+ AW C+ + S ++YD K+R L+A+V+E +L GC +W L+ + KL +R L R + S + D R LSY + L++ C IEA V KR L +AG V+R+ D+RLPN ++ M GG RG R+ + AF + + W +A+D WY KVE GA FM
Sbjct: 1 MLPKGIEERPFTVSTAGQTYKQTDRFVYLGRTISADRKADREITSRSCRAWKCYRRNSASMYDRRRADRQLKIRLLQAEVVETLLCGCASWSLTAEHYTKLNGTYRQFLTRRIG--WSKRKRSD-RPLSYAQALIQAGCEEIIEATVHKRRLCFAGFVMRMEDNRLPNRMLLEAMAGGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKDPEVWYNKVEDGAAWFM 230
BLAST of mRNA_H-elongata_contig50520.12297.1 vs. uniprot
Match: A0A6S7K883_PARCT (RNA-directed DNA polymerase from mobile element jockey-like (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7K883_PARCT) HSP 1 Score: 125 bits (314), Expect = 1.010e-29 Identity = 81/266 (30.45%), Postives = 129/266 (48.50%), Query Frame = 1
Query: 1 LENMMTAIVEVCAAFGLKVSENKTMTMNMRPPTMKAEAVAVEAVGQRYSQFDTFVYLGSTISRVGNIGPEIKRRTGYAWNCFLKYSRAVYDNPYIAVADKVRFLKAKVLEVMLYGCVTWILSPGDFDKLREAHRGMLLRCLNAYTSTQATPDYRMLSYLEVLLRTDCACIEAAVMKRILHYAGRVVRIHDDRLPNIVMRGEMVGGKKKRGQPAKRLKRRVMKYCTAFGIDPKCWMRAAQDAPEWYRKVETGAEAFMSASSTKRVNE 798
L+++M + F L +S KT + PP + + ++ GQ+ TF YLGSTIS + EI+RR A + F + V+ + I + K+ K V+ +LYG TW L KL EA + LR + + TP + EVL R C +E+ + KR L +AG +VR+ D+RLP I++ GE+ G + G+P KR K + + + + W A+D W + TG ++F A T+R+ +
Sbjct: 126 LQSLMDSFTNASRRFDLTISIKKTEVLCQPPPGVLLDKPSIIVNGQKLKTTKTFPYLGSTISNDEQLHHEIERRIAKASSSFGRLKDRVWKSHDIKLETKIALFKVVVISTLLYGGETWTLYARHIKKL-EAFQQRSLRSIMRVKWEEKTP------HSEVLERAKCCSVESILKKRQLQWAGHIVRMDDERLPKILLYGELQQGNRMVGRPRKRYKDSLKDALKSCNVPLQSWETRAEDRASWRTAIHTGVQSFE-AGRTERIRQ 383
BLAST of mRNA_H-elongata_contig50520.12297.1 vs. uniprot
Match: A0A7D9M5G6_PARCT (RNA-directed DNA polymerase from mobile element jockey-like (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9M5G6_PARCT) HSP 1 Score: 127 bits (320), Expect = 1.130e-29 Identity = 82/266 (30.83%), Postives = 130/266 (48.87%), Query Frame = 1
Query: 1 LENMMTAIVEVCAAFGLKVSENKTMTMNMRPPTMKAEAVAVEAVGQRYSQFDTFVYLGSTISRVGNIGPEIKRRTGYAWNCFLKYSRAVYDNPYIAVADKVRFLKAKVLEVMLYGCVTWILSPGDFDKLREAHRGMLLRCLNAYTSTQATPDYRMLSYLEVLLRTDCACIEAAVMKRILHYAGRVVRIHDDRLPNIVMRGEMVGGKKKRGQPAKRLKRRVMKYCTAFGIDPKCWMRAAQDAPEWYRKVETGAEAFMSASSTKRVNE 798
L+++M + F L +S KT + PP + + ++ GQ+ TF YLGSTIS + EI+RR A + F + V+ + I + K+ KA V+ +LYG TW L KL EA + LR + + TP + EVL R C +E+ + KR L +AG +VR+ D+RLP I++ GE+ G + G+P KR K + + + + W A+D W + TG ++F A T+R+ +
Sbjct: 412 LQSLMDSFANASRRFDLTISIKKTEVLCQPPPGVLLDKPSIIVNGQKLKTTKTFPYLGSTISDDAQLDHEIERRIAKASSSFERLKDRVWKSHDIKLETKIALFKAVVISTLLYGGETWTLYARHIKKL-EAFQQRSLRSIMRVKWEEKTP------HSEVLERAKCCSVESILKKRQLQWAGHIVRMDDERLPKILLYGELQQGNRMVGRPRKRYKDSLKDALKSCNVPLQSWETRAEDRASWRTAIHTGVQSFE-AGRTERIRQ 669
BLAST of mRNA_H-elongata_contig50520.12297.1 vs. uniprot
Match: A0A6S7JKI9_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JKI9_PARCT) HSP 1 Score: 122 bits (307), Expect = 1.360e-29 Identity = 78/251 (31.08%), Postives = 121/251 (48.21%), Query Frame = 1
Query: 1 LENMMTAIVEVCAAFGLKVSENKTMTMNMRPPTMKAEAVAVEAVGQRYSQFDTFVYLGSTISRVGNIGPEIKRRTGYAWNCFLKYSRAVYDNPYIAVADKVRFLKAKVLEVMLYGCVTWILSPGDFDKLREAHRGMLLRCLNAYTSTQATPDYRMLSYLEVLLRTDCACIEAAVMKRILHYAGRVVRIHDDRLPNIVMRGEMVGGKKKRGQPAKRLKRRVMKYCTAFGIDPKCWMRAAQDAPEWYRKVETG 753
L+++M + F L +S KT + PP + + ++ GQ+ TF YLGSTIS + EI+RR A + F + V+ + I + K+ KA V+ +LYG TW L KL EA + LR + + TP + EVL R C +E+ + KR L +AG +VR+ D+RLP I++ GE+ G + G+P KR K + + + + W A+D W + TG
Sbjct: 59 LQSLMDSFANASRRFDLTISIKKTEVLCQPPPGVLLDKPSIIVNGQKLKTTKTFPYLGSTISDDAQLDHEIERRIAKASSSFERLKDRVWKSHDIKLETKIALFKAVVISTLLYGGETWTLYARHIKKL-EAFQQRSLRSIMRVKWEEKTP------HSEVLERAKCCSVESILKKRQLQWAGHIVRMDDERLPKILLYGELQQGNRMVGRPRKRYKDSLKDALKSCNVPLQSWETRAEDRASWRTAIHTG 302
BLAST of mRNA_H-elongata_contig50520.12297.1 vs. uniprot
Match: UPI001CF59A58 (uncharacterized protein LOC122965242 n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF59A58) HSP 1 Score: 125 bits (313), Expect = 3.130e-29 Identity = 82/253 (32.41%), Postives = 117/253 (46.25%), Query Frame = 1
Query: 1 LENMMTAIVEVCAAFGLKVSENKTMTMNMRPPTMKAEAVAVEAVGQRYSQFDTFVYLGSTISRVGNIGPEIKRRTGYAWNCFLKYSRAVYDNPYIAVADKVRFLKAKVLEVMLYGCVTWILSPGDFDKLREAHRGMLLRCLNAYTSTQATPDYRMLSYLEVLLRTDCACIEAAVMKRILHYAGRVVRIHDDRLPNIVMRGEMVGGKKKRGQPAKRLKRRVMKYCTAFGIDPKCWMRAAQDAPEWYRKVETGAE 759
L+ +M C AFGL +S KT M P + R DTFVYLGSTISR G++ EI RT F K + V+ + I + K+ +L +LY W +L H+ L R LN + TPD +L E C IE+ +MK L +AG VVR+ D+R+P + GE++ GK+ + +P KR K + AF I + W A+ EW + ++ GAE
Sbjct: 105 LQEIMNLFSTACDAFGLTISIKKTKVMFTPVPGAPYVEPDIFVKKTRLEVVDTFVYLGSTISRDGSLDAEINLRTQKTGTAFGKLEKRVWSDRGITIKTKISVYSTCILTALLYSSECWTTHQRHLKQLERFHQKCLRRILNIKWQS-LTPDTAVLQIAE------CPSIESLIMKNQLRWAGHVVRMEDERIPKQLFYGELMTGKRPQHKPKKRFKDCIKNNLKAFKIPVENWETLAKSRTEWRQLLKRGAE 350
BLAST of mRNA_H-elongata_contig50520.12297.1 vs. uniprot
Match: UPI001CF21395 (uncharacterized protein LOC122952729 n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF21395) HSP 1 Score: 125 bits (313), Expect = 4.630e-29 Identity = 83/253 (32.81%), Postives = 118/253 (46.64%), Query Frame = 1
Query: 1 LENMMTAIVEVCAAFGLKVSENKTMTMNMRPPTMKAEAVAVEAVGQRYSQFDTFVYLGSTISRVGNIGPEIKRRTGYAWNCFLKYSRAVYDNPYIAVADKVRFLKAKVLEVMLYGCVTWILSPGDFDKLREAHRGMLLRCLNAYTSTQATPDYRMLSYLEVLLRTDCACIEAAVMKRILHYAGRVVRIHDDRLPNIVMRGEMVGGKKKRGQPAKRLKRRVMKYCTAFGIDPKCWMRAAQDAPEWYRKVETGAE 759
L+ +M C AFGL +S KT M P + R DTFVYLGSTISR G++ EI RT A F K + V+ + I + K+ +L +LY W +L H+ L R LN + TPD +L E C IE+ +MK L +AG VVR+ D+R+P + GE++ GK+ + +P KR K + AF I + W A+ EW + ++ GAE
Sbjct: 158 LQEIMNLFSRACDAFGLTISIKKTKVMFTPVPGAPYVEPDIFVKKTRLEFVDTFVYLGSTISRDGSLDAEINLRTQKASIAFRKLEKRVWSDRGITIKTKISVYSTCILTALLYSSECWTTHQRHLKQLETFHQKCLRRILNIKWQS-LTPDTGVLQIAE------CPSIESLIMKNQLRWAGHVVRMEDERIPKQLFYGELMTGKRPQHKPKKRFKDCIKNNLKAFKIPVENWETLAKSRTEWRQLLKRGAE 403
BLAST of mRNA_H-elongata_contig50520.12297.1 vs. uniprot
Match: UPI00077B22FF (uncharacterized protein LOC107355912 n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077B22FF) HSP 1 Score: 124 bits (310), Expect = 2.120e-28 Identity = 82/254 (32.28%), Postives = 120/254 (47.24%), Query Frame = 1
Query: 1 LENMMTAIVEVCAAFGLKVSENKTMTMNMRPPTMKAEAVAVEAVGQRYSQFDTFVYLGSTISRVGNIGPEIKRRTGYAWNCFLKYSRAVYDNPYIAVADKVRFLKAKVLEVMLYGCVTWILSPGDFDKLREAHRGMLLRCLNAYTSTQATPDYRML-SYLEVLLRTDCACIEAAVMKRILHYAGRVVRIHDDRLPNIVMRGEMVGGKKKRGQPAKRLKRRVMKYCTAFGIDPKCWMRAAQDAPEWYRKVETGAE 759
L+ +M C AFGL +S KT M P + R DTFVYLGSTISR G++ EI RT + F K + V+ + I + K+ +L +LY W +L+ H+ L R LN +R L S VL +C IE+ +MK L +AG VVR+ D+R+P + GE++ GK+++ +P KR K + AF I + W A+ EW + ++ GAE
Sbjct: 283 LQEIMNLFSTACDAFGLTISIKKTKVMFTPVPGAPYVEPDIFVKKTRLEVVDTFVYLGSTISRDGSLDAEINLRTQKSSAAFRKLEKRVWSDRGITIKTKISVYSTCILTALLYSSECWTTHQRHLKQLKRFHQKCLRRILNI--------KWRSLTSDTAVLQIAECPTIESLIMKNQLRWAGHVVRMEDERIPKQLFYGELMTGKRQQHKPKKRFKDCIKNNLKAFKIPVENWETLAKSRTEWRQLLKRGAE 528
BLAST of mRNA_H-elongata_contig50520.12297.1 vs. uniprot
Match: A0A8C5PP25_9ANUR (Reverse transcriptase domain-containing protein n=10 Tax=Leptobrachium leishanense TaxID=445787 RepID=A0A8C5PP25_9ANUR) HSP 1 Score: 122 bits (307), Expect = 7.210e-28 Identity = 77/255 (30.20%), Postives = 121/255 (47.45%), Query Frame = 1
Query: 1 LENMMTAIVEVCAAFGLKVSENKTMTMNMRPPTMKAEAVAVEAVGQRYSQFDTFVYLGSTISRVGNIGPEIKRRTGYAWNCFLKYSRAVYDNPYIAVADKVRFLKAKVLEVMLYGCVTWILSPGDFDKLREAHRGMLLRCLNAYTSTQATPDYRMLSYLEVLLRTDCACIEAAVMKRILHYAGRVVRIHDDRLPNIVMRGEMVGGKKKRGQPAKRLKRRVMKYCTAFGIDPKCWMRAAQDAPEWYRKVETGAEAF 765
+++ + + C FGL ++ KT M P ++ GQR + D F YLGS +SR + E+ R A F + + V+D I K++ +A VL +L+GC TW + KL H L + L + PD EVL+R D I + + L +AG V R+ D+RLP +++ GE+ GK+ +G KR K + AF I+P W AAQD +W ++ GA+++
Sbjct: 664 MQHSVDIFADACNNFGLTINRKKTEVMYQPAPRKPYAEPSITISGQRLNAVDKFTYLGSILSRSVVMDDELIARLAKANAAFGRLRKNVWDRRGIRQKTKIKVYRAAVLSTLLHGCETWTIYQRHAKKLNHFHTTSLRKLLGIKWQDKV-PD------TEVLVRADLPSIFTILAQSQLRWAGHVARMKDNRLPKMLLFGELTQGKRSQGGQKKRYKDTLKAALKAFNINPINWELAAQDKIKWRSAIKNGAQSY 911
BLAST of mRNA_H-elongata_contig50520.12297.1 vs. uniprot
Match: A0A6S7JBE9_PARCT (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JBE9_PARCT) HSP 1 Score: 108 bits (270), Expect = 1.930e-23 Identity = 71/215 (33.02%), Postives = 107/215 (49.77%), Query Frame = 1
Query: 1 LENMMTAIVEVCAAFGLKVSENKTMTMNMRPPTMKAEAVAVEAVGQRYSQFDTFVYLGSTISRVGNIGPEIKRRTGYAWNCFLKYSRAVYDNPYIAVADKVRFLKAKVLEVMLYGCVTWILSPGDFDKLREAHRGMLLRCLNAYTSTQATPDYRMLSYLEVLLRTDCACIEAAVMKRILHYAGRVVRIHDDRLPNIVMRGEMVGGKKKRGQPAKR 645
L+++M + F L +S KT + PP + + ++ GQ+ TF YLGSTIS + EI+RR A + F + V+ + I + K+ KA V+ +LYG TW L KL E + LR + + TP + EVL R C IE+ + KR L +AG +VR+ D+RLP I++ GE+ G + G+P KR
Sbjct: 142 LQSLMDSFANASRRFDLTISIKKTEVLCQPPPGVLLDKPSIIVNGQKLKTTKTFPYLGSTISDDAQLDHEIERRIAKASSSFGRLKDRVWKSHDIKLETKIGLFKAVVISTLLYGGETWTLYARHIKKL-EVFQQRSLRSIMRVNWEEKTP------HSEVLERAKCCSIESILKKRQLQWAGHIVRMDDERLPKILLYGELQQGNRMVGRPRKR 349 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50520.12297.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 22
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig50520.12297.1 >prot_H-elongata_contig50520.12297.1 ID=prot_H-elongata_contig50520.12297.1|Name=mRNA_H-elongata_contig50520.12297.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=269bp MMTAIVEVCAAFGLKVSENKTMTMNMRPPTMKAEAVAVEAVGQRYSQFDTback to top mRNA from alignment at H-elongata_contig50520:2..817+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig50520.12297.1 ID=mRNA_H-elongata_contig50520.12297.1|Name=mRNA_H-elongata_contig50520.12297.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=816bp|location=Sequence derived from alignment at H-elongata_contig50520:2..817+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig50520:2..817+ >mRNA_H-elongata_contig50520.12297.1 ID=mRNA_H-elongata_contig50520.12297.1|Name=mRNA_H-elongata_contig50520.12297.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1614bp|location=Sequence derived from alignment at H-elongata_contig50520:2..817+ (Himanthalia elongata Himel1 dioecious)back to top |