mRNA_H-elongata_contig50480.12291.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig50480.12291.1
Unique NamemRNA_H-elongata_contig50480.12291.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig50480.12291.1 vs. uniprot
Match: A0A6H5KJA2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJA2_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 1.640e-17
Identity = 47/73 (64.38%), Postives = 53/73 (72.60%), Query Frame = 2 
Query:    2 TLVLFMLLMVAFPVGTFFALYDFFLVDAAHKTRTFCSGIAAVLAANGVMAAYAIVALKEGPGDAGAETGSKRP 220
            TL+LF   MVAFP+GTFFA +D+ L D A  TRTFCSG+AAVLAAN VMA YAIVA+KE     G E G  RP
Sbjct:   38 TLILFSAFMVAFPIGTFFAFHDYILRDTAPNTRTFCSGMAAVLAANIVMAGYAIVAIKED----GVEEGGNRP 106
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50480.12291.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KJA2_9PHAE1.640e-1764.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig50480contigH-elongata_contig50480:843..2285 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons3
Model size426
Cds size234
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig50480.12291.1prot_H-elongata_contig50480.12291.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig50480 1019..2269 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930829.959835-UTR-H-elongata_contig50480:842..10181622930829.959835-UTR-H-elongata_contig50480:842..1018Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig50480 843..1018 -
1691679588.6481004-UTR-H-elongata_contig50480:842..10181691679588.6481004-UTR-H-elongata_contig50480:842..1018Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig50480 843..1018 -
1622930830.0124464-UTR-H-elongata_contig50480:2269..22851622930830.0124464-UTR-H-elongata_contig50480:2269..2285Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig50480 2270..2285 -
1691679588.6869028-UTR-H-elongata_contig50480:2269..22851691679588.6869028-UTR-H-elongata_contig50480:2269..2285Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig50480 2270..2285 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930829.9719496-CDS-H-elongata_contig50480:1018..11571622930829.9719496-CDS-H-elongata_contig50480:1018..1157Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50480 1019..1157 -
1691679588.6582046-CDS-H-elongata_contig50480:1018..11571691679588.6582046-CDS-H-elongata_contig50480:1018..1157Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50480 1019..1157 -
1622930829.9852507-CDS-H-elongata_contig50480:1487..15181622930829.9852507-CDS-H-elongata_contig50480:1487..1518Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50480 1488..1518 -
1691679588.6677177-CDS-H-elongata_contig50480:1487..15181691679588.6677177-CDS-H-elongata_contig50480:1487..1518Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50480 1488..1518 -
1622930830.0008118-CDS-H-elongata_contig50480:2205..22691622930830.0008118-CDS-H-elongata_contig50480:2205..2269Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50480 2206..2269 -
1691679588.6770685-CDS-H-elongata_contig50480:2205..22691691679588.6770685-CDS-H-elongata_contig50480:2205..2269Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50480 2206..2269 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig50480.12291.1

>prot_H-elongata_contig50480.12291.1 ID=prot_H-elongata_contig50480.12291.1|Name=mRNA_H-elongata_contig50480.12291.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=78bp
MLLMVAFPVGTFFALYDFFLVDAAHKTRTFCSGIAAVLAANGVMAAYAIV
ALKEGPGDAGAETGSKRPVDGTSAKVD*
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mRNA from alignment at H-elongata_contig50480:843..2285-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig50480.12291.1 ID=mRNA_H-elongata_contig50480.12291.1|Name=mRNA_H-elongata_contig50480.12291.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1443bp|location=Sequence derived from alignment at H-elongata_contig50480:843..2285- (Himanthalia elongata Himel1 dioecious)
GACCTTGGTGTTGTTTATGTTGTTGATGGTGGCATTCCCGGTTGGCACCT
TCTTCGCCCTCTACGATTTCTTTCTTGTTGGTGAGAAAGGAGAGGAGGGG
AGGGTAGTAGGAGAGAGTATGTCGTGTTTTTATTTTCATGCTCCAAGTAC
ACCGCGTTCGTATTCAGCTTTGTTTCGCAATCTACTGCCTACTTCCCTTA
CGTAGAGTTCGATACTTGGTCAAGGTAGAGAGCTTGAGATGAGAATGCAG
AGATCATTTTGAGGCGCCCGCATCGGCGTCGCAAAATATTGTACCCTGTC
AGCTGTAGGGTGTCCGTATTATTCATCTATCTGGATATCAACCATGTGAT
GATCGTACAGCAGCAGCCGCGATTGTCGTACCCATTCCGTTCACATCCGG
TATCGTAGAGAGAAATGAAAAAGCGATGACCCCAAGATTTCTAATCAACC
ACACTTTTCCTCCACATATTATTCATTTGTGGTCTTGACATATCAGTATT
CTTCGAGATGAAAATGCCCGCCCCAGTACTGTCTACTATTATAACGGTGT
ATCTTCGTCGAACGATGTGGGGAATTGTATTTTATGGTTCGTAAAGAAAG
TGACTATGAGGCATTGAAAGCGACGTAACCTCTTGATCGACCACGGTATA
TCAACCCCTCGCATCATGTACATTATCATGCATCATGCAACGTTTTGCGA
AATTCTTGGTCTGCCGACTTGGGCTCGTCGCTTGCAACGTCCTTCTGGTG
GCGTATGGGATGAGAAGACGCCGCGCACAAAACACGAACGTTCTGCAGGT
ACTGTAATGTACTGTACTGCTGCTAGCTATACTTCACCTGTATATTTAAA
TCTAGCTTTATGCGGGAAAGGCCGAAATAATAGACCGACAAATCCACGGC
ACATCCTTCGTGTGTCATTTTTTCTTGTTATAAAGAGCATACAGGAGTTT
CACTGGCCGTGTAAGTTGCGACCTTAATCATTCGCTTATCGATGTGTTAT
TAGCTATTACTATTGTTGTGTTATTAGTACTGTTAGTTCGTCCTCCCCCC
CGTTACATGTTTGCGAACGCTATCCTCTTTGATATTTCTTTACAACATTC
CTTGTCCTCGTGACTCCTTGTGTCGCAGTGGGATTGCCGCTGTGCTTGCT
GCCAATGGAGTAATGGCCGCGTACGCCATTGTTGCGTTGAAAGAGGGCCC
AGGAGACGCCGGCGCGGAGACGGGAAGCAAACGTCCAGTCGATGGGACAT
CGGCAAAAGTAGACTAACTTCAAATTTCAAGCACAGCAGTAGCTATGAAT
ACAGAGAGCGATCTTGTAAGTAACTGCAATTCAAGACCTCCGCACATAGT
CTGTCACTTCAGCGGTCGACTTTTATTCCGCAGATATTTTAAAGGATAAC
CATATTTGATGACCATCTTGTCACATCCATGCAACAAGTGATG
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Coding sequence (CDS) from alignment at H-elongata_contig50480:843..2285-

>mRNA_H-elongata_contig50480.12291.1 ID=mRNA_H-elongata_contig50480.12291.1|Name=mRNA_H-elongata_contig50480.12291.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=468bp|location=Sequence derived from alignment at H-elongata_contig50480:843..2285- (Himanthalia elongata Himel1 dioecious)
ATGTTGTTGATGGTGGCATTCCCGGTTGGCACCTTCTTCGCCCTCTACGA
TTTCTTTCTTGTTGATGTTGTTGATGGTGGCATTCCCGGTTGGCACCTTC
TTCGCCCTCTACGATTTCTTTCTTGTTGACGCCGCGCACAAAACACGAAC
GTTCTGCAGACGCCGCGCACAAAACACGAACGTTCTGCAGTGGGATTGCC
GCTGTGCTTGCTGCCAATGGAGTAATGGCCGCGTACGCCATTGTTGCGTT
GAAAGAGGGCCCAGGAGACGCCGGCGCGGAGACGGGAAGCAAACGTCCAG
TCGATGGGACATCGGCAAAAGTAGACTAATGGGATTGCCGCTGTGCTTGC
TGCCAATGGAGTAATGGCCGCGTACGCCATTGTTGCGTTGAAAGAGGGCC
CAGGAGACGCCGGCGCGGAGACGGGAAGCAAACGTCCAGTCGATGGGACA
TCGGCAAAAGTAGACTAA
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