mRNA_H-elongata_contig50470.12289.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig50470.12289.1
Unique NamemRNA_H-elongata_contig50470.12289.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig50470.12289.1 vs. uniprot
Match: A0A6H5JBA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA7_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 1.530e-34
Identity = 68/134 (50.75%), Postives = 88/134 (65.67%), Query Frame = 1
Query:    1 ECEGCSVAKGLGKPIGRTTSTRADKVFDRLFVDICGEKYIASIRGKRYMLVVCDNFSRFTWAYFMRQKYDTVTLFEHFLADERMAGTPSAVEVVRSDEGGEF-KGDFAKLCRRHNIRQELTTADSLKFNGVAER 399
            EC GCS+AK + K I R T +R+DK   R+FVD+ G K +AS+ GK Y ++V D+F+R  W YF++ K D    F  FLA  R  G PS VE+VRSD GGEF  G+FA +C    I+QE T A S ++NGVAER
Sbjct:  698 ECTGCSMAKAVKKGIARETKSRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVRADGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAER 831          
BLAST of mRNA_H-elongata_contig50470.12289.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 1.530e-34
Identity = 68/134 (50.75%), Postives = 88/134 (65.67%), Query Frame = 1
Query:    1 ECEGCSVAKGLGKPIGRTTSTRADKVFDRLFVDICGEKYIASIRGKRYMLVVCDNFSRFTWAYFMRQKYDTVTLFEHFLADERMAGTPSAVEVVRSDEGGEF-KGDFAKLCRRHNIRQELTTADSLKFNGVAER 399
            EC GCS+AK + K I R T +R+DK   R+FVD+ G K +AS+ GK Y ++V D+F+R  W YF++ K D    F  FLA  R  G PS VE+VRSD GGEF  G+FA +C    I+QE T A S ++NGVAER
Sbjct:  405 ECTGCSMAKAVKKGIARETKSRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVRADGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAER 538          
BLAST of mRNA_H-elongata_contig50470.12289.1 vs. uniprot
Match: A0A6H5K2M6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M6_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 1.300e-33
Identity = 66/133 (49.62%), Postives = 86/133 (64.66%), Query Frame = 1
Query:    4 CEGCSVAKGLGKPIGRTTSTRADKVFDRLFVDICGEKYIASIRGKRYMLVVCDNFSRFTWAYFMRQKYDTVTLFEHFLADERMAGTPSAVEVVRSDEGGEF-KGDFAKLCRRHNIRQELTTADSLKFNGVAER 399
            C GCS++K   K I   T  R+DK   R+FVD+ G K +AS+ GK Y ++V D+F+R TW YF++ K D  + F  FLA  R  G PS VE+VRSD GGEF  G+FA +C    I+QE T A S ++NGVAER
Sbjct:  605 CTGCSMSKAFKKGIAHETKCRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRTWMYFLKSKSDAASAFRSFLASVRADGIPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAER 737          
BLAST of mRNA_H-elongata_contig50470.12289.1 vs. uniprot
Match: A0A6H5L3Y0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y0_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 1.770e-33
Identity = 68/133 (51.13%), Postives = 87/133 (65.41%), Query Frame = 1
Query:    4 CEGCSVAKGLGKPIGRTTSTRADKVFDRLFVDICGEKYIASIRGKRYMLVVCDNFSRFTWAYFMRQKYDTVTLFEHFLADERMAGTPSAVEVVRSDEGGEF-KGDFAKLCRRHNIRQELTTADSLKFNGVAER 399
            C GCS++K + K I R T  R+DK   R+FVD+ G K  AS+ GK Y ++V D+F+R TW YF+R K D  + F  FLA  R  G PS VE+VRSD GGEF  G+FA +C    I+QE T A S ++NGVAER
Sbjct:  165 CSGCSMSKAIRKGIVRETKRRSDKKLGRVFVDLGGRKDSASVGGKHYPMIVKDDFTRRTWMYFLRNKSDAGSAFRTFLASVRANGVPSFVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAER 297          
BLAST of mRNA_H-elongata_contig50470.12289.1 vs. uniprot
Match: A0A6H5K583_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K583_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 1.810e-33
Identity = 67/133 (50.38%), Postives = 91/133 (68.42%), Query Frame = 1
Query:    1 ECEGCSVAKGLGKPIGRTTSTRADKVFDRLFVDICGEKYIASIRGKRYMLVVCDNFSRFTWAYFMRQKYDTVTLFEHFLADERMAGTPSAVEVVRSDEGGEF-KGDFAKLCRRHNIRQELTTADSLKFNGVAE 396
            EC GC  AKGL KPI +T STRA K   R+FVD+ G+  + S+ GK Y L+V D+++R+   YF++ K D    FE +LA+ R  G PS V VVRSD GGEF +G+F ++CR++ I+QE T A S ++NGVAE
Sbjct:  976 ECLGCLTAKGLSKPIPKT-STRAAKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAE 1107          
BLAST of mRNA_H-elongata_contig50470.12289.1 vs. uniprot
Match: A0A6H5JH25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH25_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 8.640e-33
Identity = 64/133 (48.12%), Postives = 87/133 (65.41%), Query Frame = 1
Query:    4 CEGCSVAKGLGKPIGRTTSTRADKVFDRLFVDICGEKYIASIRGKRYMLVVCDNFSRFTWAYFMRQKYDTVTLFEHFLADERMAGTPSAVEVVRSDEGGEF-KGDFAKLCRRHNIRQELTTADSLKFNGVAER 399
            C GCS+ K + K I   T+  +DK   R+FV++ G+K +ASI GK Y +++ D+F+R  W YF+R K D  + F  FLA+ R  G PS +E+VRSD GGEF  G+FA +C    I+QE T A S +FNGVAER
Sbjct:  426 CSGCSMGKAIRKAIAHVTTNSSDKKLGRVFVNLGGKKGVASIGGKHYPMILKDDFTRRAWMYFLRSKSDAGSAFRSFLANVRADGIPSLIEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAHSPEFNGVAER 558          
BLAST of mRNA_H-elongata_contig50470.12289.1 vs. uniprot
Match: A0A6H5JV76_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV76_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 7.060e-32
Identity = 66/133 (49.62%), Postives = 86/133 (64.66%), Query Frame = 1
Query:    4 CEGCSVAKGLGKPIGRTTSTRADKVFDRLFVDICGEKYIASIRGKRYMLVVCDNFSRFTWAYFMRQKYDTVTLFEHFLADERMAGTPSAVEVVRSDEGGEF-KGDFAKLCRRHNIRQELTTADSLKFNGVAER 399
            C GCS++K + K I R T  R+DK   R+FVD+ G K IAS+ GK Y ++V D+F+R TW YF++ + D    F  FLA  R    PS VE+VRSD GGEF  G+FA +C    I+QE T A S ++NGVAER
Sbjct:  287 CSGCSMSKAIRKGIVRETKRRSDKKLGRVFVDLGGRKDIASVGGKHYPMIVKDDFTRRTWMYFLKNESDAGGAFRTFLASVRANIVPSFVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAER 419          
BLAST of mRNA_H-elongata_contig50470.12289.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 1.400e-31
Identity = 66/133 (49.62%), Postives = 85/133 (63.91%), Query Frame = 1
Query:    4 CEGCSVAKGLGKPIGRTTSTRADKVFDRLFVDICGEKYIASIRGKRYMLVVCDNFSRFTWAYFMRQKYDTVTLFEHFLADERMAGTPSAVEVVRSDEGGEF-KGDFAKLCRRHNIRQELTTADSLKFNGVAER 399
            C GCS++K + K I   T  R+DK   R+FVD+ G K IAS+ GK Y ++V D+F+R TW  F+R K D  + F  FLA  R  G PS VE+VRSD GGEF  G+F  +C    I+QE T A S ++NGVAER
Sbjct:  220 CSGCSMSKAIRKGIVGETKRRSDKKLGRVFVDLGGRKDIASVGGKHYPMIVKDDFTRRTWICFLRNKSDAGSAFRTFLASVRANGVPSFVEIVRSDNGGEFFGGEFTSVCNELLIKQEFTPAYSPQYNGVAER 352          
BLAST of mRNA_H-elongata_contig50470.12289.1 vs. uniprot
Match: A0A6H5KPZ8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPZ8_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 2.020e-30
Identity = 60/132 (45.45%), Postives = 86/132 (65.15%), Query Frame = 1
Query:    4 CEGCSVAKGLGKPIGRTTSTRADKVFDRLFVDICGEKYIASIRGKRYMLVVCDNFSRFTWAYFMRQKYDTVTLFEHFLADERMAGTPSAVEVVRSDEGGEFKGDFAKLCRRHNIRQELTTADSLKFNGVAER 399
            C GCS++KG  KP+ ++TS+RA     R+++D+ G+    SI G  Y L++ D+FSR+T  +F++ K D    FE FLAD R  G P  V + R+D GGEF+G FA++CRRH I+QELT   +  +  VAER
Sbjct:  456 CLGCSMSKGQVKPVQKSTSSRAVTKIFRVYLDLGGKMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGFEKFLADYRTEGVPCKVYIARTDGGGEFQGQFAEVCRRHGIKQELTPPHTPIYKDVAER 587          
BLAST of mRNA_H-elongata_contig50470.12289.1 vs. uniprot
Match: A0A6H5KGJ8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGJ8_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 2.300e-27
Identity = 61/153 (39.87%), Postives = 85/153 (55.56%), Query Frame = 1
Query:    4 CEGCSVAKGLG---------------------KPIGRTTSTRADKVFDRLFVDICGEKYIASIRGKRYMLVVCDNFSRFTWAYFMRQKYDTVTLFEHFLADERMAGTPSAVEVVRSDEGGEFKGDFAKLCRRHNIRQELTTADSLKFNGVAER 399
            C GCSV KG                       KP+ ++TSTRADK   R+++D+ G+    SI    Y L++ D+FSR+T  +F++ K D    FE FL D R    P  V + R+D+GGEF+G FA++ RRH I+QE T   + K+N VAER
Sbjct:  169 CLGCSVFKGXXXXXXXXXXXXXXXXXXXXXQVKPVQKSTSTRADKKLFRVYLDLGGKMKTRSIGDHWYTLMIRDDFSRWTRVFFLKHKSDAAVGFEKFLVDYRTKEVPCEVYITRTDDGGEFQGQFAEVFRRHGIKQEFTPPHTPKYNDVAER 321          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50470.12289.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JBA7_9PHAE1.530e-3450.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZH7_9PHAE1.530e-3450.75Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2M6_9PHAE1.300e-3349.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L3Y0_9PHAE1.770e-3351.13Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K583_9PHAE1.810e-3350.38Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JH25_9PHAE8.640e-3348.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JV76_9PHAE7.060e-3249.62Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5JRL9_9PHAE1.400e-3149.62Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5KPZ8_9PHAE2.020e-3045.45Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KGJ8_9PHAE2.300e-2739.87Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig50470contigH-elongata_contig50470:3288..3686 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score92.0
Seed ortholog evalue2.2e-16
Seed eggNOG ortholog4530.OS08T0125300-01
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs37THH@33090,3GG2K@35493,3IIIB@38820,3M5VU@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size399
Cds size399
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930829.8306713-CDS-H-elongata_contig50470:3287..36861622930829.8306713-CDS-H-elongata_contig50470:3287..3686Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50470 3288..3686 +
1691679588.6246347-CDS-H-elongata_contig50470:3287..36861691679588.6246347-CDS-H-elongata_contig50470:3287..3686Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50470 3288..3686 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig50470.12289.1prot_H-elongata_contig50470.12289.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig50470 3288..3686 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig50470.12289.1

>prot_H-elongata_contig50470.12289.1 ID=prot_H-elongata_contig50470.12289.1|Name=mRNA_H-elongata_contig50470.12289.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=133bp
ECEGCSVAKGLGKPIGRTTSTRADKVFDRLFVDICGEKYIASIRGKRYML
VVCDNFSRFTWAYFMRQKYDTVTLFEHFLADERMAGTPSAVEVVRSDEGG
EFKGDFAKLCRRHNIRQELTTADSLKFNGVAER
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mRNA from alignment at H-elongata_contig50470:3288..3686+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig50470.12289.1 ID=mRNA_H-elongata_contig50470.12289.1|Name=mRNA_H-elongata_contig50470.12289.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=399bp|location=Sequence derived from alignment at H-elongata_contig50470:3288..3686+ (Himanthalia elongata Himel1 dioecious)
GAGTGCGAGGGATGCTCAGTTGCTAAAGGTCTTGGCAAGCCGATCGGCAG GACAACTTCGACAAGGGCCGATAAGGTATTTGATCGTTTGTTCGTAGACA TTTGTGGAGAAAAGTATATTGCGTCGATCAGAGGGAAGCGATACATGCTG GTAGTCTGTGATAACTTCTCGCGTTTTACGTGGGCATACTTCATGCGTCA AAAATACGATACAGTTACTCTTTTTGAGCATTTTTTGGCTGACGAACGCA TGGCAGGAACCCCCTCAGCAGTAGAAGTGGTACGTTCTGATGAAGGGGGA GAATTCAAAGGGGATTTTGCAAAACTCTGTAGGAGGCACAACATCCGTCA GGAGCTTACTACCGCTGATAGCTTGAAATTTAACGGAGTAGCTGAACGC
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Coding sequence (CDS) from alignment at H-elongata_contig50470:3288..3686+

>mRNA_H-elongata_contig50470.12289.1 ID=mRNA_H-elongata_contig50470.12289.1|Name=mRNA_H-elongata_contig50470.12289.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=798bp|location=Sequence derived from alignment at H-elongata_contig50470:3288..3686+ (Himanthalia elongata Himel1 dioecious)
GAGTGCGAGGGATGCTCAGTTGCTAAAGGTCTTGGCAAGCCGATCGGCAG
GACAACTTCGACAAGGGCCGATAAGGTATTTGATCGTTTGTTCGTAGACA
TTTGTGGAGAAAAGTATATTGCGTCGATCAGAGGGAAGCGATACATGCTG
GTAGTCTGTGATAACTTCTCGCGTTTTACGTGGGCATACTTCATGCGTCA
AAAATACGATACAGTTACTCTTTTTGAGCATTTTTTGGCTGACGAACGCA
TGGCAGGAACCCCCTCAGCAGTAGAAGTGGTACGTTCTGATGAAGGGGGA
GAATTCAAAGGGGATTTTGCAAAACTCTGTAGGAGGCACAACATCCGTCA
GGAGCTTACTACCGCTGATAGCTTGAAATTTAACGGAGTAGCTGAACGCG
AGTGCGAGGGATGCTCAGTTGCTAAAGGTCTTGGCAAGCCGATCGGCAGG
ACAACTTCGACAAGGGCCGATAAGGTATTTGATCGTTTGTTCGTAGACAT
TTGTGGAGAAAAGTATATTGCGTCGATCAGAGGGAAGCGATACATGCTGG
TAGTCTGTGATAACTTCTCGCGTTTTACGTGGGCATACTTCATGCGTCAA
AAATACGATACAGTTACTCTTTTTGAGCATTTTTTGGCTGACGAACGCAT
GGCAGGAACCCCCTCAGCAGTAGAAGTGGTACGTTCTGATGAAGGGGGAG
AATTCAAAGGGGATTTTGCAAAACTCTGTAGGAGGCACAACATCCGTCAG
GAGCTTACTACCGCTGATAGCTTGAAATTTAACGGAGTAGCTGAACGC
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