mRNA_H-elongata_contig50465.12288.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig50465.12288.1
Unique NamemRNA_H-elongata_contig50465.12288.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig50465.12288.1 vs. uniprot
Match: D8LDQ4_ECTSI (DEAD box helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDQ4_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 1.550e-17
Identity = 47/61 (77.05%), Postives = 50/61 (81.97%), Query Frame = 1 
Query:    1 QEEQRRAEEADNSLSTQDKADRERLRAQQMAEVAAFSREEADGLADDPTLKGAHWSEKARA 183
            QEEQRRAE AD+SL+ QDKADRER R QQMAEV AFS  EADG+ DDP LKGAHWSEK  A
Sbjct:  488 QEEQRRAEAADHSLTAQDKADRERAREQQMAEVEAFSLAEADGMGDDPVLKGAHWSEKPLA 548
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BLAST of mRNA_H-elongata_contig50465.12288.1 vs. uniprot
Match: A0A6H5KZB6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZB6_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 1.560e-17
Identity = 47/61 (77.05%), Postives = 50/61 (81.97%), Query Frame = 1 
Query:    1 QEEQRRAEEADNSLSTQDKADRERLRAQQMAEVAAFSREEADGLADDPTLKGAHWSEKARA 183
            QEEQRRAE AD+SL+ QDKADRER R QQMAEV AFS  EADG+ DDP LKGAHWSEK  A
Sbjct:  505 QEEQRRAEAADHSLTAQDKADRERAREQQMAEVEAFSLAEADGMGDDPVLKGAHWSEKPLA 565
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50465.12288.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LDQ4_ECTSI1.550e-1777.05DEAD box helicase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A6H5KZB6_9PHAE1.560e-1777.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig50465contigH-elongata_contig50465:3710..3922 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score86.3
Seed ortholog evalue6.4e-15
Seed eggNOG ortholog2880.D8LDQ4
Preferred namePRP28
KEGG koko:K12858
KEGG Pathwayko03040,map03040
KEGG ModuleM00354
GOsGO:0000245,GO:0000375,GO:0000377,GO:0000384,GO:0000395,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005682,GO:0005730,GO:0005737,GO:0006139,GO:0006376,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008026,GO:0008104,GO:0008150,GO:0008152,GO:0008186,GO:0008380,GO:0009987,GO:0010467,GO:0010501,GO:0016043,GO:0016070,GO:0016071,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031974,GO:0031981,GO:0032991,GO:0033036,GO:0034622,GO:0034641,GO:0035770,GO:0036464,GO:0042623,GO:0043170,GO:0043186,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045292,GO:0045495,GO:0046483,GO:0051179,GO:0060293,GO:0065003,GO:0070013,GO:0070035,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0097525,GO:0120114,GO:0140098,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.helicase activity
EggNOG OGsCOG0513@1,KOG0333@2759
EC3.6.4.13
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03041
Hectar predicted targeting categoryother localisation
Exons1
Model size213
Cds size213
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930829.7928607-CDS-H-elongata_contig50465:3709..39221622930829.7928607-CDS-H-elongata_contig50465:3709..3922Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50465 3710..3922 -
1691679588.6127613-CDS-H-elongata_contig50465:3709..39221691679588.6127613-CDS-H-elongata_contig50465:3709..3922Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50465 3710..3922 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig50465.12288.1prot_H-elongata_contig50465.12288.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig50465 3710..3922 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig50465.12288.1

>prot_H-elongata_contig50465.12288.1 ID=prot_H-elongata_contig50465.12288.1|Name=mRNA_H-elongata_contig50465.12288.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=71bp
QEEQRRAEEADNSLSTQDKADRERLRAQQMAEVAAFSREEADGLADDPTL
KGAHWSEKARAHSLLLILLL*
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mRNA from alignment at H-elongata_contig50465:3710..3922-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig50465.12288.1 ID=mRNA_H-elongata_contig50465.12288.1|Name=mRNA_H-elongata_contig50465.12288.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=213bp|location=Sequence derived from alignment at H-elongata_contig50465:3710..3922- (Himanthalia elongata Himel1 dioecious)
CAGGAGGAGCAGCGTCGCGCAGAAGAAGCGGACAATTCCCTGTCGACCCA
GGACAAGGCCGACCGCGAGAGATTGAGGGCTCAGCAGATGGCGGAGGTGG
CGGCCTTCTCGAGGGAGGAAGCGGACGGCCTCGCGGATGACCCTACCCTC
AAGGGGGCGCACTGGTCTGAGAAGGCGAGAGCACATTCACTACTGTTGAT
ACTGCTGCTATGA
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Coding sequence (CDS) from alignment at H-elongata_contig50465:3710..3922-

>mRNA_H-elongata_contig50465.12288.1 ID=mRNA_H-elongata_contig50465.12288.1|Name=mRNA_H-elongata_contig50465.12288.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=426bp|location=Sequence derived from alignment at H-elongata_contig50465:3710..3922- (Himanthalia elongata Himel1 dioecious)
CAGGAGGAGCAGCGTCGCGCAGAAGAAGCGGACAATTCCCTGTCGACCCA
GGACAAGGCCGACCGCGAGAGATTGAGGGCTCAGCAGATGGCGGAGGTGG
CGGCCTTCTCGAGGGAGGAAGCGGACGGCCTCGCGGATGACCCTACCCTC
AAGGGGGCGCACTGGTCTGAGAAGGCGAGAGCACATTCACTACTGTTGAT
ACTGCTGCTATGACAGGAGGAGCAGCGTCGCGCAGAAGAAGCGGACAATT
CCCTGTCGACCCAGGACAAGGCCGACCGCGAGAGATTGAGGGCTCAGCAG
ATGGCGGAGGTGGCGGCCTTCTCGAGGGAGGAAGCGGACGGCCTCGCGGA
TGACCCTACCCTCAAGGGGGCGCACTGGTCTGAGAAGGCGAGAGCACATT
CACTACTGTTGATACTGCTGCTATGA
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