mRNA_H-elongata_contig50457.12286.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig50457.12286.1 vs. uniprot
Match: A0A6H5JKX1_9PHAE (RNB domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JKX1_9PHAE) HSP 1 Score: 275 bits (704), Expect = 4.120e-84 Identity = 144/194 (74.23%), Postives = 161/194 (82.99%), Query Frame = 1
Query: 4 HDFRNASFGVYCIDGKGTSFLDDAFSIDPETREVFIHITDVQGLVSPGSTLDELARLRAASEYLPQGPLFMMPPTALKAMSFSDRAVNEAITVGIRLDPETGAVLSSRVMLTILPPVLPLTFVQADSLLGAGQSQERATGSLARVAAEIRALEHVSRRSAEAGGRRERRREGVRLRVGSGGKVQATQMTQSRYA 585
HDFR ASFGVYCIDG GT FLDDAFS+DPETREVFIHITDVQGLV GSTLD++AR+RAASEYLPQGPLFMMPP ALKAMSFSD+ VNEA+TVGIRLDP+TG V SSRVMLT LPP +PLTF Q D LL A + E G LARVA EI+ALE+V RRSAEA GRRER REGV+ R G+GG+ QA ++ SR +
Sbjct: 485 HDFRGASFGVYCIDGAGTRFLDDAFSVDPETREVFIHITDVQGLVPTGSTLDDVARMRAASEYLPQGPLFMMPPMALKAMSFSDKGVNEAVTVGIRLDPKTGGVASSRVMLTTLPPAVPLTFDQTDRLLEATEKGETGDGRLARVAKEIQALEYVGRRSAEASGRRERGREGVKFRKGAGGETQALEVAASRQS 678
BLAST of mRNA_H-elongata_contig50457.12286.1 vs. uniprot
Match: A0A835Z4W4_9STRA (RNB domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4W4_9STRA) HSP 1 Score: 154 bits (390), Expect = 6.090e-40 Identity = 73/136 (53.68%), Postives = 97/136 (71.32%), Query Frame = 1
Query: 1 RHDFRNASFGVYCIDGKGTSFLDDAFSIDPETREVFIHITDVQGLVSPGSTLDELARLRAASEYLPQGPLFMMPPTALKAMSFSDRAVNEAITVGIRLDPETGAVLSSRVMLTILPPVLPLTFVQADSLLGAGQSQ 408
R D+R A+F VYC+D +F DDA S DP+ RE+ IH+ D Q LV G LD +A+ R ++YLP+GPLFMMPP AL+A++FS A NEAITV + +DP+TGAV SR+MLT+LPPV+ LT A+++L G Q
Sbjct: 362 RRDYRGAAFSVYCVDAPSANFYDDAVSWDPDARELLIHVVDAQLLVEDGGALDAVAQARVCTQYLPRGPLFMMPPAALQAIAFSADAPNEAITVALTIDPDTGAVTGSRLMLTVLPPVVALTHRDANAMLEGGHDQ 497
BLAST of mRNA_H-elongata_contig50457.12286.1 vs. uniprot
Match: A0A482SRG6_9ARCH (RNB domain-containing ribonuclease n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SRG6_9ARCH) HSP 1 Score: 108 bits (271), Expect = 5.020e-24 Identity = 55/130 (42.31%), Postives = 81/130 (62.31%), Query Frame = 1
Query: 16 NASFGVYCIDGKGTSFLDDAFSIDPETREVFIHITDVQGLVSPGSTLDELARLRAASEYLPQGPLFMMPPTALKAMSFSDRAVNEAITVGIRLDPETGAVLSSRVMLTILPPVLPLTFVQADSLLGAGQS 405
+AS V CID K +F DDA S+ PET E+ +H+ DV G + L + A+ R +SEYLP G + M PP AL+A++FS + NEAIT ++D +G+VL RV +I+ PV+ QA++++ A S
Sbjct: 488 SASHPVMCIDAKSATFFDDAISLCPETGELLVHVIDVTGALRAHPELQQTAKERISSEYLPNGAIHMFPPKALEALTFSSKEPNEAITAAFKIDYASGSVLDYRVFPSIIGPVVSFDIDQANTIIEAKSS 617
BLAST of mRNA_H-elongata_contig50457.12286.1 vs. uniprot
Match: A0A7S0ZJC8_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZJC8_9RHOD) HSP 1 Score: 96.3 bits (238), Expect = 2.380e-20 Identity = 55/124 (44.35%), Postives = 72/124 (58.06%), Query Frame = 1
Query: 31 VYCIDGKGTSFLDDAFSIDPETRE-------VFIHITDVQGLVSPGSTLDELARLRAASEYLPQGPLFMMPPTALKAMSFSDRAVNEAITVGIRLDPETGAVLSSRVMLTILPPVLPLTFVQAD 381
V+CID +F DDA S E E V +HI DV + P S LD +A+ RA S YLP GPL M+PP ++A+SF+ +EA+TV + +DPE+G V + LT LPP LTF QA
Sbjct: 66 VFCIDDAVANFRDDAISCS-EIEEFGKRFLVVSVHIADVDESIEPDSDLDAIAKDRAQSIYLPAGPLHMLPPVLMEALSFNAEYASEAVTVRMLIDPESGQVEHYSIKLTYLPPATILTFQQAS 188
BLAST of mRNA_H-elongata_contig50457.12286.1 vs. uniprot
Match: A0A7S1TNE9_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1TNE9_9RHOD) HSP 1 Score: 87.0 bits (214), Expect = 2.000e-16 Identity = 46/129 (35.66%), Postives = 77/129 (59.69%), Query Frame = 1
Query: 37 CIDGKGTSFLDDAFSI-------DPETRE--VFIHITDVQGLVSPGSTLDELARLRAASEYLPQGPLFMMPPTALKAMSFSDRAVNEAITVGIRLDPETGAVLSSRVMLTILPPVLPLTFVQADSLLGA 396
C+D G +F DDA S +R+ V +H+ DV +V GS LD+ AR RA S YLP GPL M+PP ++A+SFS+ A ++A+++ + + ++G ++ ++ +++PPV+ TF A + A
Sbjct: 338 CVDDVGANFRDDAVSCYELPSGDGHASRQIVVVVHVADVSAVVCEGSALDDAARNRAQSIYLPTGPLHMLPPVLMEAVSFSETAPSDAVSIAMTICTDSGELVRYKIARSLVPPVVCYTFDAAKEAISA 466
BLAST of mRNA_H-elongata_contig50457.12286.1 vs. uniprot
Match: A0A2T2RE89_9CYAN (RNB domain-containing ribonuclease n=1 Tax=Cyanobacteria bacterium SW_9_44_58 TaxID=1919144 RepID=A0A2T2RE89_9CYAN) HSP 1 Score: 72.8 bits (177), Expect = 1.620e-11 Identity = 49/138 (35.51%), Postives = 71/138 (51.45%), Query Frame = 1
Query: 31 VYCIDGKGTSFLDDAFSID--PETRE-VFIHITDVQGLVSPGSTLDELARLRAASEYLPQGPLFMMPPT-ALKAMSFSDRAVNEAITVGIRLDPETGAVLSSRVMLTILPPVLPLTFVQADSLLGAGQSQERATGSLA 432
VY ID + T +DD SI+ P+ R+ ++IHI D LV P LD+ AR R+ S YLP G + M PP A MS V+ A++ G+ LD G + + +++ P LT+ D +L G + E LA
Sbjct: 271 VYTIDDESTKEIDDGISIETLPDGRQQIWIHIADPTRLVQPEDELDQEARRRSTSLYLPTGMISMFPPELATGPMSLVQGQVSPAVSFGVILD-NNGEIADYTISASLVKPTYRLTYDDVDEMLELGVTAEPEIAQLA 407
BLAST of mRNA_H-elongata_contig50457.12286.1 vs. uniprot
Match: A0A0P9EK12_RHOGW (RNB domain-containing protein n=1 Tax=Rhodotorula graminis (strain WP1) TaxID=578459 RepID=A0A0P9EK12_RHOGW) HSP 1 Score: 72.8 bits (177), Expect = 1.800e-11 Identity = 50/147 (34.01%), Postives = 75/147 (51.02%), Query Frame = 1
Query: 1 RHDFRNASFGVYCIDGKGTSFLDDAFSIDP----------ETREVFIHITDVQGLVSPGSTLDELARLRAASEYLPQGPLFMMPPTALKAMSFSDRAVNEA------ITVGIRLDPETGAVLSSRVMLTILPPVLPLTFVQADSLLG 393
RHDF +A+ VY ID G S LDD S+ P +T V +H+ D L+ PG L +LAR+R +EY P+ M+P + S A+ A +++G+R+D E+G VL + V + ++ V LT+ D LG
Sbjct: 687 RHDFGSAT--VYTIDDIGASELDDGISLAPGPPSSSSTGGKTWWVHVHVADPTALLHPGHLLAKLARVRDHTEYFPEKTWAMLPEQFVVGQRMSLGALEGAQQGQRVLSLGMRVDAESGEVLENEVKVGVVRDVRRLTYSAVDRALG 831
BLAST of mRNA_H-elongata_contig50457.12286.1 vs. uniprot
Match: A0A7X8CYR9_9SPIR (RNB domain-containing ribonuclease n=1 Tax=Treponema sp. TaxID=166 RepID=A0A7X8CYR9_9SPIR) HSP 1 Score: 68.6 bits (166), Expect = 4.520e-10 Identity = 44/127 (34.65%), Postives = 71/127 (55.91%), Query Frame = 1
Query: 31 VYCIDGKGTSFLDDAFSIDPETREVFIHITDVQGLVSPGSTLDELARLRAASEYLPQGPLFMMPPTALKAMSFSDRAVNEAITVGIRLDPETGAVLSSRVMLTILPPVLPLTFVQADSLLGAGQSQE 411
+ ID + DDA S D R+V++H+ D + PGS D A RAA+ YLP+ + M+P +AL V+ A++V I L+PE G+V + ++ + + V L++ QAD++LG+G E
Sbjct: 235 AWAIDNAWSRDPDDAISFDG--RDVWVHVADPASAILPGSPADREAADRAATLYLPESSVPMLPDSALDRFGLGLSGVSRALSVRISLEPE-GSVREAEILPSFVK-VARLSYGQADTVLGSGPLAE 357
BLAST of mRNA_H-elongata_contig50457.12286.1 vs. uniprot
Match: A0A328C5J8_9DELT (RNB domain-containing protein n=1 Tax=Lujinxingia litoralis TaxID=2211119 RepID=A0A328C5J8_9DELT) HSP 1 Score: 68.6 bits (166), Expect = 4.690e-10 Identity = 54/148 (36.49%), Postives = 78/148 (52.70%), Query Frame = 1
Query: 40 IDGKGTSFLDDAFSIDPETR---EVFIHITDVQGLVSPGSTLDELARLRAASEYLPQGPLFMMPPTALK-AMSFSDRAVNEAITVGIRLDPETGAVLSSRVMLTILPPVLPLTFVQADSLLGAGQSQERATGSLARVAAEIRALEHVS 471
ID T +DDA +I+P E+ IHI D LV+PGS LD+ AR RA S YLP G + M P + MS AIT +R D + A++ + V+ +++ LT+ +AD+LL AG+ + T L R LEH++
Sbjct: 301 IDDASTRDIDDALAINPTEDGGWELDIHIADPSALVAPGSLLDQEARRRATSVYLPTGVIPMFPHRLSEDRMSLLQDERRPAITTRVRFDADL-AIVDTTVIPSMVCVKKRLTYEEADALL-AGEGNDHVTQML-------RQLEHIA 439
BLAST of mRNA_H-elongata_contig50457.12286.1 vs. uniprot
Match: K0S3P0_THAOC (RNB domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S3P0_THAOC) HSP 1 Score: 68.6 bits (166), Expect = 4.810e-10 Identity = 52/151 (34.44%), Postives = 71/151 (47.02%), Query Frame = 1
Query: 10 FRNASFGVYCIDGKGTSFLDDAFSIDPETR------------EVFIHITDVQGLVSPGSTL---DELARLRAASEY-------LPQGPLFMMPPTALKAMSFS--DRAVNEAITVGIRLDPETGAVLSSRVMLTILPPVLPLTFVQADSLL 390
F +S CID K TSF DDA I + EV IHI DV + G L ++A LR A+E LP GPL ++PP ALKA+S + + N +T+ +D G +L + + T++ LTF A SLL
Sbjct: 478 FDLSSLPCVCIDAKRTSFRDDAIGIRLRSSTGRKVSKAASKWEVLIHIADVSDIYLKGEGLLPSHDIALLRHAAEQRGMSRYDLPLGPLHLLPPVALKALSLKTDEDSCNRCVTLWAYIDERDGKLLEAGLERTLIASPTALTFADATSLL 628 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50457.12286.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig50457.12286.1 >prot_H-elongata_contig50457.12286.1 ID=prot_H-elongata_contig50457.12286.1|Name=mRNA_H-elongata_contig50457.12286.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=198bp RHDFRNASFGVYCIDGKGTSFLDDAFSIDPETREVFIHITDVQGLVSPGSback to top mRNA from alignment at H-elongata_contig50457:788..2740+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig50457.12286.1 ID=mRNA_H-elongata_contig50457.12286.1|Name=mRNA_H-elongata_contig50457.12286.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1953bp|location=Sequence derived from alignment at H-elongata_contig50457:788..2740+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig50457:788..2740+ >mRNA_H-elongata_contig50457.12286.1 ID=mRNA_H-elongata_contig50457.12286.1|Name=mRNA_H-elongata_contig50457.12286.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1188bp|location=Sequence derived from alignment at H-elongata_contig50457:788..2740+ (Himanthalia elongata Himel1 dioecious)back to top |