mRNA_H-elongata_contig50442.12284.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig50442.12284.1
Unique NamemRNA_H-elongata_contig50442.12284.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig50442.12284.1 vs. uniprot
Match: D8LUB1_ECTSI (EGF-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LUB1_ECTSI)

HSP 1 Score: 234 bits (598), Expect = 1.630e-71
Identity = 104/137 (75.91%), Postives = 113/137 (82.48%), Query Frame = 1
Query:    1 QGPAWFDEAAADGSAHAYAECSNRGHCDRGNGTCVCHDDFTGDACQRMKCPNDCSGNGKCLSMRQLGLMAVDPDLIPSPASYGSIAGNPLTWDADAIYGCFCDWMGYQTGGPSYTNLSXXXXXDCSRKSCPTGHDIK 411
            +GPAWFDEAA DG+AHAYAECS RG CDR  G C C D FTGDACQRM CPNDC+GNGKCLS+RQLGL+A+D D +PSP  YGS AGN LTWDADA+YGC+CDWMGYQ GGPSYTNLS     DCSRKSCPTG D K
Sbjct:  324 EGPAWFDEAATDGTAHAYAECSARGLCDRETGVCACSDGFTGDACQRMTCPNDCNGNGKCLSLRQLGLLALDSDYVPSPFVYGSTAGNQLTWDADAVYGCYCDWMGYQGGGPSYTNLSDWTGYDCSRKSCPTGDDRK 460          
BLAST of mRNA_H-elongata_contig50442.12284.1 vs. uniprot
Match: A0A5A8E442_CAFRO (Uncharacterized protein n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E442_CAFRO)

HSP 1 Score: 123 bits (309), Expect = 4.360e-30
Identity = 67/141 (47.52%), Postives = 79/141 (56.03%), Query Frame = 1
Query:    4 GPAWFDEAAADGSAHAYAECSNRGHCDRGNGTCVCHDDFTGDACQRMKCPN------DCSGNGKCLSMRQLGLMAVDPDLIPSPASYGSIA-GNPLTWDADAIYGCFCDWMGYQTGGPSYTNLSXXXXXDCSRKSCPTGHD 405
            GPAWFD   AD SAHA AECSNRGHC+R    C CH  FTG+AC+R+ CP       +CS +G+C SM QL   A D +  P+P  YGS + G    WD  A YGC CD      G   Y          CS++SCPTG D
Sbjct:  334 GPAWFDSPVADDSAHAEAECSNRGHCNRETSLCACHPGFTGEACERLACPRGGPGMEECSAHGRCASMSQLAAEA-DTNGDPTPFRYGSASPGLTTAWDGRAAYGCLCD-----DGFEGYA---------CSKRSCPTGDD 459          
BLAST of mRNA_H-elongata_contig50442.12284.1 vs. uniprot
Match: A0A7S1GDV7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GDV7_9STRA)

HSP 1 Score: 110 bits (276), Expect = 2.150e-28
Identity = 57/132 (43.18%), Postives = 70/132 (53.03%), Query Frame = 1
Query:   10 AWFDEAAADGSAHAYAECSNRGHCDRGNGTCVCHDDFTGDACQRMKCPNDCSGNGKCLSMRQLGLMAVDPDLIPSPASYGSIAGNPLTWDADAIYGCFCDWMGYQTGGPSYTNLSXXXXXDCSRKSCPTGHD 405
            AWFD   A  +AHA AECSN G CDR  G C C + + GDACQR  CPNDCSG+GKC+S+           +  +  SYG       TWD + IY C CD           T L+     DCS++ CP+G D
Sbjct:   21 AWFDVPTAATTAHAVAECSNAGVCDRLTGKCSCFEGYDGDACQRYACPNDCSGHGKCVSISTYQTETNAMPVRTNSLSYGGSEAT-TTWDENKIYACVCDSSWTVGLADGETQLAEWFGSDCSKRRCPSGDD 151          
BLAST of mRNA_H-elongata_contig50442.12284.1 vs. uniprot
Match: A0A7S2H126_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H126_9STRA)

HSP 1 Score: 112 bits (279), Expect = 2.870e-28
Identity = 60/134 (44.78%), Postives = 71/134 (52.99%), Query Frame = 1
Query:   10 AWFDEAAADGSAHAYAECSNRGHCDRGNGTCVCHDDFTGDACQRMKCPNDCSGNGKCLSMRQLGLMAVDPDLIPSPASYGSIAGNPLT-WDADAIYGCFCDWMGYQTG-GPSYTNLSXXXXXDCSRKSCPTGHD 405
            AW D   +  +AHA AECSNRG CD   G C C   F GDACQR  CPNDCSG+G+CLSM+QL        LI     Y        T WD D +YGC CD   ++ G G      +     DCS + CP+G D
Sbjct:    1 AWADIPTSSDTAHAIAECSNRGICDSTTGECECFRGFEGDACQRKSCPNDCSGHGRCLSMKQLAQEVTAFPLIHGDKLYTYEEDETTTTWDEDMLYGCLCD-SSWEVGLGAGQRRDAEWFGYDCSMRHCPSGDD 133          
BLAST of mRNA_H-elongata_contig50442.12284.1 vs. uniprot
Match: A0A835YN50_9STRA (EGF-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN50_9STRA)

HSP 1 Score: 114 bits (285), Expect = 3.300e-28
Identity = 58/136 (42.65%), Postives = 77/136 (56.62%), Query Frame = 1
Query:    4 GPAWFDEAAADGSAHAYAECSNRGHCDRGNGTCVCHDDFTGDACQRMKCPNDCSGNGKCLSMRQLGLMAVDPDLIPSPASYGSIAGNPL--TWDADAIYGCFCDWMGYQTGGPSYTNLSXXXXXDCSRKSCPTGHD 405
            GPAW D   A  +AHA  ECS  G CDR +G C C   F GDACQRM CPN+CSG+G+C+S++    M  +P+ +P  ++     G+ L  TWD D I+GC CD         + T        DCS + CP+G+D
Sbjct:   86 GPAWGDVPTAKYTAHAALECSGMGLCDRDSGVCRCFTGFEGDACQRMACPNNCSGHGRCMSLKN---MVNEPNALPLSSNAHEYGGDELATTWDEDRIFGCVCDSSWAVGLKATETQAVEWFGPDCSLRHCPSGND 218          
BLAST of mRNA_H-elongata_contig50442.12284.1 vs. uniprot
Match: D8LSB1_ECTSI (EGF-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSB1_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 3.790e-28
Identity = 63/137 (45.99%), Postives = 76/137 (55.47%), Query Frame = 1
Query:    4 GPAWFDEAAADGSAHA-YAECSNRGHCDRGNGTCVCHDDFTGDACQRMKCPNDCSGNGKCLSMRQLGLMAVDPDLIPSPASYGSIAGNPLTWDADAIYGCFCD--WMGYQTGGPSYTNLSXXXXXDCSRKSCPTGHD 405
            G AW D A A+ +AHA Y ECSN G CDR  G C C   FTG+ACQRM+C NDC+G G+C+SMR+   + +D D +     Y         WDAD IYGC CD  W GY                DCS++SCP G D
Sbjct:  140 GAAWVDHATANNTAHAAYTECSNMGVCDRATGLCSCRTGFTGEACQRMECLNDCNGRGRCMSMREAAAL-IDGDSLEFEGVYDG-------WDADMIYGCLCDDGWEGY----------------DCSKRSCPKGVD 252          
BLAST of mRNA_H-elongata_contig50442.12284.1 vs. uniprot
Match: W4G505_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G505_9STRA)

HSP 1 Score: 115 bits (289), Expect = 2.280e-27
Identity = 61/135 (45.19%), Postives = 77/135 (57.04%), Query Frame = 1
Query:    4 GPAWFDEAAADGSAHAYAECSNRGHCDRGNGTCVCHDDFTGDACQRMKCPNDCSGNGKCLSMRQL-GLMAVDPDLIPSPASYGSIAGNPLTWDADAIYGCFCDWMGYQTGGPSYTNLSXXXXXDCSRKSCPTGHD 405
            G AWFD       AHA AECSN G CDR  G CVC   FTG +C RM CPN+CSG+G C +++ + GL  ++ D  P   +YG+I  N  TWD D + GC C+        P YT+       DCS+ +CPTG D
Sbjct:  380 GKAWFDMPFDAQGAHALAECSNAGTCDRSKGECVCDPRFTGASCNRMVCPNECSGHGTCQTIQSMAGLSVINGD--PVKLTYGAIPNNYPTWDFDQLQGCVCN--------PGYTDF------DCSKFTCPTGDD 498          
BLAST of mRNA_H-elongata_contig50442.12284.1 vs. uniprot
Match: A0A7S1GE12_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GE12_9STRA)

HSP 1 Score: 110 bits (276), Expect = 3.570e-27
Identity = 57/132 (43.18%), Postives = 70/132 (53.03%), Query Frame = 1
Query:   10 AWFDEAAADGSAHAYAECSNRGHCDRGNGTCVCHDDFTGDACQRMKCPNDCSGNGKCLSMRQLGLMAVDPDLIPSPASYGSIAGNPLTWDADAIYGCFCDWMGYQTGGPSYTNLSXXXXXDCSRKSCPTGHD 405
            AWFD   A  +AHA AECSN G CDR  G C C + + GDACQR  CPNDCSG+GKC+S+           +  +  SYG       TWD + IY C CD           T L+     DCS++ CP+G D
Sbjct:  135 AWFDVPTAATTAHAVAECSNAGVCDRLTGKCSCFEGYDGDACQRYACPNDCSGHGKCVSISTYQTETNAMPVRTNSLSYGGSEAT-TTWDENKIYACVCDSSWTVGLADGETQLAEWFGSDCSKRRCPSGDD 265          
BLAST of mRNA_H-elongata_contig50442.12284.1 vs. uniprot
Match: A0A067C0G1_SAPPC (Uncharacterized protein n=4 Tax=Saprolegnia TaxID=4769 RepID=A0A067C0G1_SAPPC)

HSP 1 Score: 114 bits (285), Expect = 6.870e-27
Identity = 62/136 (45.59%), Postives = 78/136 (57.35%), Query Frame = 1
Query:    4 GPAWFDEAAADGSAHAYAECSNRGHCDRGNGTCVCHDDFTGDACQRMKCPNDCSGNGKCLSMRQLG-LMAVDPDLIPSPA-SYGSIAGNPLTWDADAIYGCFCDWMGYQTGGPSYTNLSXXXXXDCSRKSCPTGHD 405
            G +WFD  ++   AH  AECSN G CDR  G C+C   FTG AC R++CPNDCSG+G CL+M+ L  L  ++ D  P  A +YGSI  N  TWD + + GC C+        P Y         DCS+ SCPTG D
Sbjct:  379 GTSWFDIPSSPNGAHQLAECSNAGTCDRTRGVCLCDTRFTGAACNRLECPNDCSGHGTCLTMQNLAPLTKLNGD--PRTAFTYGSIPNNNPTWDYNQVQGCACN--------PGYEGF------DCSKLSCPTGDD 498          
BLAST of mRNA_H-elongata_contig50442.12284.1 vs. uniprot
Match: A0A6G0WRG8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WRG8_9STRA)

HSP 1 Score: 114 bits (285), Expect = 7.930e-27
Identity = 63/135 (46.67%), Postives = 75/135 (55.56%), Query Frame = 1
Query:    4 GPAWFDEAAADGSAHAYAECSNRGHCDRGNGTCVCHDDFTGDACQRMKCPNDCSGNGKCLSMRQLGLMAV-DPDLIPSPASYGSIAGNPLTWDADAIYGCFCDWMGYQTGGPSYTNLSXXXXXDCSRKSCPTGHD 405
            G AWFD       AH   ECSN G+CDR  G CVC   FTG AC RM CPN CSG+G C +++ +  M+V + D  P+  SYGSI  N  TWD D+  GC C+  GYQ               DCS+ SCPTG D
Sbjct:  378 GKAWFDLPYDVQGAHQLVECSNAGYCDRAKGECVCDPRFTGAACNRMVCPNSCSGHGSCQTIQVMATMSVINGD--PTRLSYGSIPNNYPTWDFDSTQGCVCN-QGYQ-------------GYDCSQMSCPTGDD 496          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50442.12284.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LUB1_ECTSI1.630e-7175.91EGF-like domain-containing protein n=1 Tax=Ectocar... [more]
A0A5A8E442_CAFRO4.360e-3047.52Uncharacterized protein n=4 Tax=Cafeteria roenberg... [more]
A0A7S1GDV7_9STRA2.150e-2843.18Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S2H126_9STRA2.870e-2844.78Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A835YN50_9STRA3.300e-2842.65EGF-like domain-containing protein n=1 Tax=Tribone... [more]
D8LSB1_ECTSI3.790e-2845.99EGF-like domain-containing protein n=1 Tax=Ectocar... [more]
W4G505_9STRA2.280e-2745.19Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A7S1GE12_9STRA3.570e-2743.18Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A067C0G1_SAPPC6.870e-2745.59Uncharacterized protein n=4 Tax=Saprolegnia TaxID=... [more]
A0A6G0WRG8_9STRA7.930e-2746.67Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig50442contigH-elongata_contig50442:1934..3359 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score236.1
Seed ortholog evalue9.7e-60
Seed eggNOG ortholog2880.D8LUB1
EggNOG free text desc.regulation of canonical Wnt signaling pathway involved in osteoblast differentiation
EggNOG OGsKOG1225@1,KOG1225@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSix-bladed beta-propeller, TolB-like
Ec32 orthologEc-14_004330.1
Exons3
Model size414
Cds size414
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig50442.12284.1prot_H-elongata_contig50442.12284.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig50442 1934..3359 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930829.4108472-CDS-H-elongata_contig50442:1933..20321622930829.4108472-CDS-H-elongata_contig50442:1933..2032Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50442 1934..2032 -
1691679588.4152582-CDS-H-elongata_contig50442:1933..20321691679588.4152582-CDS-H-elongata_contig50442:1933..2032Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50442 1934..2032 -
1622930829.426115-CDS-H-elongata_contig50442:2402..25791622930829.426115-CDS-H-elongata_contig50442:2402..2579Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50442 2403..2579 -
1691679588.4262812-CDS-H-elongata_contig50442:2402..25791691679588.4262812-CDS-H-elongata_contig50442:2402..2579Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50442 2403..2579 -
1622930829.4383206-CDS-H-elongata_contig50442:3221..33591622930829.4383206-CDS-H-elongata_contig50442:3221..3359Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50442 3222..3359 -
1691679588.435697-CDS-H-elongata_contig50442:3221..33591691679588.435697-CDS-H-elongata_contig50442:3221..3359Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50442 3222..3359 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig50442.12284.1

>prot_H-elongata_contig50442.12284.1 ID=prot_H-elongata_contig50442.12284.1|Name=mRNA_H-elongata_contig50442.12284.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=138bp
QGPAWFDEAAADGSAHAYAECSNRGHCDRGNGTCVCHDDFTGDACQRMKC
PNDCSGNGKCLSMRQLGLMAVDPDLIPSPASYGSIAGNPLTWDADAIYGC
FCDWMGYQTGGPSYTNLSDWMGYDCSRKSCPTGHDIK*
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mRNA from alignment at H-elongata_contig50442:1934..3359-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig50442.12284.1 ID=mRNA_H-elongata_contig50442.12284.1|Name=mRNA_H-elongata_contig50442.12284.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1426bp|location=Sequence derived from alignment at H-elongata_contig50442:1934..3359- (Himanthalia elongata Himel1 dioecious)
CAGGGACCGGCGTGGTTTGATGAAGCGGCTGCCGATGGATCGGCTCATGC ATATGCGGAGTGCTCGAACCGTGGCCACTGCGACCGTGGCAATGGAACTT GTGTGTGCCACGACGATTTTACCGGCGACGCGTGTCAGGTACGGCTTCTG GCGGGCGTTTTATCAGCATCGGACAAGGCAGGATACTCCAGACTGGTCCA TTCAACCCTGAGGAGGAGTAAACAAAAGTTAGGAGTCTTAAGTCACCCCC CACTGTCTTCTTGTCTGTTTCTTTGGCGAAAAAATATATACGGTATAATA TAAATATGGCTAAAATATACGAAGTATATTATACCACTACCTAAATTTCA CCGGAGACGCGAGTTTGTTAATAAACACTAATATTATCGTGAACCGCCAC TTCGTAACTCTTATGTTAATAGCTACGGTATGATTTTTTATTTCGCCATC GTGCAAGCACCGAAAGTATTCAAAGACAATTAATTGTGATTCAATCCTTT GGAGGCGTTGACGAGTTGGTGATCAACAACGTAGACACCTCTCTTTTATC CTGGCTTTCGTCGGTCGGACGAAACTTGGGTTTATTGTCCACTACGTACG GCCTATGAGATCGTTTGAATGCGCACCGTTTTCCCCCGCCTAGAGTGATC ACCGGGGTATAAAAGGCATATTGTTCACCGACACATGTCGAATCGAATCA ACATAATCAAACGTCCCAACATCTTCATTCTGGTATAAAATTACGCCTTC GTCGCCTCGCCTACTATGTTGCTGTACCAGCGCATGAAGTGTCCTAATGA CTGCTCCGGAAACGGCAAGTGCCTGTCCATGCGCCAGCTTGGTCTCATGG CTGTAGATCCAGACTTAATACCGAGCCCAGCCTCGTACGGGTCGATCGCC GGCAACCCCTTGACGTGGGATGCCGACGCTATCTACGGCTGTTTTTGCGA TTGGATGGTAAGGGTTACAACAAAAATAAAATAAATGATTGTTACGGATA CATTCCGAACAGGACTGACAGAGGTTGAATCAGGAGAAGTCAAGCATCCT TGCCTTCAATTTTATTTGGTGTGCAGATTTCAAAGCTTAGAGACTTGGTT CCTGGTGGTATCCTCTTCATCGCCTGCTGGTCATTTTAGTGCTTGTTTCG TCGATGGCCTCCGATGAGGTCTCTATTGAGACCGGAAATGTATGCAACGG CGGCGGTTTCAGATATGTGCAGTGACATAAGCTCGCACTTGAATTCCAAC AACTTGACCGCCCCTATCCCCGATGCTTTTGATGGTGTTTTTTAAATATT TTCTCTTCGTTTTCATTAACTTCGCAGGGGTACCAAACCGGGGGACCCTC GTACACAAATCTATCGGATTGGATGGGTTACGACTGCAGCAGAAAGTCTT GCCCCACCGGACATGATATCAAGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig50442:1934..3359-

>mRNA_H-elongata_contig50442.12284.1 ID=mRNA_H-elongata_contig50442.12284.1|Name=mRNA_H-elongata_contig50442.12284.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=828bp|location=Sequence derived from alignment at H-elongata_contig50442:1934..3359- (Himanthalia elongata Himel1 dioecious)
CAGGGACCGGCGTGGTTTGATGAAGCGGCTGCCGATGGATCGGCTCATGC
ATATGCGGAGTGCTCGAACCGTGGCCACTGCGACCGTGGCAATGGAACTT
GTGTGTGCCACGACGATTTTACCGGCGACGCGTGTCAGCAGGGACCGGCG
TGGTTTGATGAAGCGGCTGCCGATGGATCGGCTCATGCATATGCGGAGTG
CTCGAACCGTGGCCACTGCGACCGTGGCAATGGAACTTGTGTGTGCCACG
ACGATTTTACCGGCGACGCGTGTCAGCGCATGAAGTGTCCTAATGACTGC
TCCGGAAACGGCAAGTGCCTGTCCATGCGCCAGCTTGGTCTCATGGCTGT
AGATCCAGACTTAATACCGAGCCCAGCCTCGTACGGGTCGATCGCCGGCA
ACCCCTTGACGTGGGATGCCGACGCTATCTACGGCTGTTTTTGCGATTGG
ATGCGCATGAAGTGTCCTAATGACTGCTCCGGAAACGGCAAGTGCCTGTC
CATGCGCCAGCTTGGTCTCATGGCTGTAGATCCAGACTTAATACCGAGCC
CAGCCTCGTACGGGTCGATCGCCGGCAACCCCTTGACGTGGGATGCCGAC
GCTATCTACGGCTGTTTTTGCGATTGGATGGGGTACCAAACCGGGGGACC
CTCGTACACAAATCTATCGGATTGGATGGGTTACGACTGCAGCAGAAAGT
CTTGCCCCACCGGACATGATATCAAGTGAGGGTACCAAACCGGGGGACCC
TCGTACACAAATCTATCGGATTGGATGGGTTACGACTGCAGCAGAAAGTC
TTGCCCCACCGGACATGATATCAAGTGA
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