mRNA_H-elongata_contig50442.12284.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig50442.12284.1 vs. uniprot
Match: D8LUB1_ECTSI (EGF-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LUB1_ECTSI) HSP 1 Score: 234 bits (598), Expect = 1.630e-71 Identity = 104/137 (75.91%), Postives = 113/137 (82.48%), Query Frame = 1
Query: 1 QGPAWFDEAAADGSAHAYAECSNRGHCDRGNGTCVCHDDFTGDACQRMKCPNDCSGNGKCLSMRQLGLMAVDPDLIPSPASYGSIAGNPLTWDADAIYGCFCDWMGYQTGGPSYTNLSXXXXXDCSRKSCPTGHDIK 411
+GPAWFDEAA DG+AHAYAECS RG CDR G C C D FTGDACQRM CPNDC+GNGKCLS+RQLGL+A+D D +PSP YGS AGN LTWDADA+YGC+CDWMGYQ GGPSYTNLS DCSRKSCPTG D K
Sbjct: 324 EGPAWFDEAATDGTAHAYAECSARGLCDRETGVCACSDGFTGDACQRMTCPNDCNGNGKCLSLRQLGLLALDSDYVPSPFVYGSTAGNQLTWDADAVYGCYCDWMGYQGGGPSYTNLSDWTGYDCSRKSCPTGDDRK 460
BLAST of mRNA_H-elongata_contig50442.12284.1 vs. uniprot
Match: A0A5A8E442_CAFRO (Uncharacterized protein n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E442_CAFRO) HSP 1 Score: 123 bits (309), Expect = 4.360e-30 Identity = 67/141 (47.52%), Postives = 79/141 (56.03%), Query Frame = 1
Query: 4 GPAWFDEAAADGSAHAYAECSNRGHCDRGNGTCVCHDDFTGDACQRMKCPN------DCSGNGKCLSMRQLGLMAVDPDLIPSPASYGSIA-GNPLTWDADAIYGCFCDWMGYQTGGPSYTNLSXXXXXDCSRKSCPTGHD 405
GPAWFD AD SAHA AECSNRGHC+R C CH FTG+AC+R+ CP +CS +G+C SM QL A D + P+P YGS + G WD A YGC CD G Y CS++SCPTG D
Sbjct: 334 GPAWFDSPVADDSAHAEAECSNRGHCNRETSLCACHPGFTGEACERLACPRGGPGMEECSAHGRCASMSQLAAEA-DTNGDPTPFRYGSASPGLTTAWDGRAAYGCLCD-----DGFEGYA---------CSKRSCPTGDD 459
BLAST of mRNA_H-elongata_contig50442.12284.1 vs. uniprot
Match: A0A7S1GDV7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GDV7_9STRA) HSP 1 Score: 110 bits (276), Expect = 2.150e-28 Identity = 57/132 (43.18%), Postives = 70/132 (53.03%), Query Frame = 1
Query: 10 AWFDEAAADGSAHAYAECSNRGHCDRGNGTCVCHDDFTGDACQRMKCPNDCSGNGKCLSMRQLGLMAVDPDLIPSPASYGSIAGNPLTWDADAIYGCFCDWMGYQTGGPSYTNLSXXXXXDCSRKSCPTGHD 405
AWFD A +AHA AECSN G CDR G C C + + GDACQR CPNDCSG+GKC+S+ + + SYG TWD + IY C CD T L+ DCS++ CP+G D
Sbjct: 21 AWFDVPTAATTAHAVAECSNAGVCDRLTGKCSCFEGYDGDACQRYACPNDCSGHGKCVSISTYQTETNAMPVRTNSLSYGGSEAT-TTWDENKIYACVCDSSWTVGLADGETQLAEWFGSDCSKRRCPSGDD 151
BLAST of mRNA_H-elongata_contig50442.12284.1 vs. uniprot
Match: A0A7S2H126_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H126_9STRA) HSP 1 Score: 112 bits (279), Expect = 2.870e-28 Identity = 60/134 (44.78%), Postives = 71/134 (52.99%), Query Frame = 1
Query: 10 AWFDEAAADGSAHAYAECSNRGHCDRGNGTCVCHDDFTGDACQRMKCPNDCSGNGKCLSMRQLGLMAVDPDLIPSPASYGSIAGNPLT-WDADAIYGCFCDWMGYQTG-GPSYTNLSXXXXXDCSRKSCPTGHD 405
AW D + +AHA AECSNRG CD G C C F GDACQR CPNDCSG+G+CLSM+QL LI Y T WD D +YGC CD ++ G G + DCS + CP+G D
Sbjct: 1 AWADIPTSSDTAHAIAECSNRGICDSTTGECECFRGFEGDACQRKSCPNDCSGHGRCLSMKQLAQEVTAFPLIHGDKLYTYEEDETTTTWDEDMLYGCLCD-SSWEVGLGAGQRRDAEWFGYDCSMRHCPSGDD 133
BLAST of mRNA_H-elongata_contig50442.12284.1 vs. uniprot
Match: A0A835YN50_9STRA (EGF-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN50_9STRA) HSP 1 Score: 114 bits (285), Expect = 3.300e-28 Identity = 58/136 (42.65%), Postives = 77/136 (56.62%), Query Frame = 1
Query: 4 GPAWFDEAAADGSAHAYAECSNRGHCDRGNGTCVCHDDFTGDACQRMKCPNDCSGNGKCLSMRQLGLMAVDPDLIPSPASYGSIAGNPL--TWDADAIYGCFCDWMGYQTGGPSYTNLSXXXXXDCSRKSCPTGHD 405
GPAW D A +AHA ECS G CDR +G C C F GDACQRM CPN+CSG+G+C+S++ M +P+ +P ++ G+ L TWD D I+GC CD + T DCS + CP+G+D
Sbjct: 86 GPAWGDVPTAKYTAHAALECSGMGLCDRDSGVCRCFTGFEGDACQRMACPNNCSGHGRCMSLKN---MVNEPNALPLSSNAHEYGGDELATTWDEDRIFGCVCDSSWAVGLKATETQAVEWFGPDCSLRHCPSGND 218
BLAST of mRNA_H-elongata_contig50442.12284.1 vs. uniprot
Match: D8LSB1_ECTSI (EGF-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSB1_ECTSI) HSP 1 Score: 118 bits (295), Expect = 3.790e-28 Identity = 63/137 (45.99%), Postives = 76/137 (55.47%), Query Frame = 1
Query: 4 GPAWFDEAAADGSAHA-YAECSNRGHCDRGNGTCVCHDDFTGDACQRMKCPNDCSGNGKCLSMRQLGLMAVDPDLIPSPASYGSIAGNPLTWDADAIYGCFCD--WMGYQTGGPSYTNLSXXXXXDCSRKSCPTGHD 405
G AW D A A+ +AHA Y ECSN G CDR G C C FTG+ACQRM+C NDC+G G+C+SMR+ + +D D + Y WDAD IYGC CD W GY DCS++SCP G D
Sbjct: 140 GAAWVDHATANNTAHAAYTECSNMGVCDRATGLCSCRTGFTGEACQRMECLNDCNGRGRCMSMREAAAL-IDGDSLEFEGVYDG-------WDADMIYGCLCDDGWEGY----------------DCSKRSCPKGVD 252
BLAST of mRNA_H-elongata_contig50442.12284.1 vs. uniprot
Match: W4G505_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G505_9STRA) HSP 1 Score: 115 bits (289), Expect = 2.280e-27 Identity = 61/135 (45.19%), Postives = 77/135 (57.04%), Query Frame = 1
Query: 4 GPAWFDEAAADGSAHAYAECSNRGHCDRGNGTCVCHDDFTGDACQRMKCPNDCSGNGKCLSMRQL-GLMAVDPDLIPSPASYGSIAGNPLTWDADAIYGCFCDWMGYQTGGPSYTNLSXXXXXDCSRKSCPTGHD 405
G AWFD AHA AECSN G CDR G CVC FTG +C RM CPN+CSG+G C +++ + GL ++ D P +YG+I N TWD D + GC C+ P YT+ DCS+ +CPTG D
Sbjct: 380 GKAWFDMPFDAQGAHALAECSNAGTCDRSKGECVCDPRFTGASCNRMVCPNECSGHGTCQTIQSMAGLSVINGD--PVKLTYGAIPNNYPTWDFDQLQGCVCN--------PGYTDF------DCSKFTCPTGDD 498
BLAST of mRNA_H-elongata_contig50442.12284.1 vs. uniprot
Match: A0A7S1GE12_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GE12_9STRA) HSP 1 Score: 110 bits (276), Expect = 3.570e-27 Identity = 57/132 (43.18%), Postives = 70/132 (53.03%), Query Frame = 1
Query: 10 AWFDEAAADGSAHAYAECSNRGHCDRGNGTCVCHDDFTGDACQRMKCPNDCSGNGKCLSMRQLGLMAVDPDLIPSPASYGSIAGNPLTWDADAIYGCFCDWMGYQTGGPSYTNLSXXXXXDCSRKSCPTGHD 405
AWFD A +AHA AECSN G CDR G C C + + GDACQR CPNDCSG+GKC+S+ + + SYG TWD + IY C CD T L+ DCS++ CP+G D
Sbjct: 135 AWFDVPTAATTAHAVAECSNAGVCDRLTGKCSCFEGYDGDACQRYACPNDCSGHGKCVSISTYQTETNAMPVRTNSLSYGGSEAT-TTWDENKIYACVCDSSWTVGLADGETQLAEWFGSDCSKRRCPSGDD 265
BLAST of mRNA_H-elongata_contig50442.12284.1 vs. uniprot
Match: A0A067C0G1_SAPPC (Uncharacterized protein n=4 Tax=Saprolegnia TaxID=4769 RepID=A0A067C0G1_SAPPC) HSP 1 Score: 114 bits (285), Expect = 6.870e-27 Identity = 62/136 (45.59%), Postives = 78/136 (57.35%), Query Frame = 1
Query: 4 GPAWFDEAAADGSAHAYAECSNRGHCDRGNGTCVCHDDFTGDACQRMKCPNDCSGNGKCLSMRQLG-LMAVDPDLIPSPA-SYGSIAGNPLTWDADAIYGCFCDWMGYQTGGPSYTNLSXXXXXDCSRKSCPTGHD 405
G +WFD ++ AH AECSN G CDR G C+C FTG AC R++CPNDCSG+G CL+M+ L L ++ D P A +YGSI N TWD + + GC C+ P Y DCS+ SCPTG D
Sbjct: 379 GTSWFDIPSSPNGAHQLAECSNAGTCDRTRGVCLCDTRFTGAACNRLECPNDCSGHGTCLTMQNLAPLTKLNGD--PRTAFTYGSIPNNNPTWDYNQVQGCACN--------PGYEGF------DCSKLSCPTGDD 498
BLAST of mRNA_H-elongata_contig50442.12284.1 vs. uniprot
Match: A0A6G0WRG8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WRG8_9STRA) HSP 1 Score: 114 bits (285), Expect = 7.930e-27 Identity = 63/135 (46.67%), Postives = 75/135 (55.56%), Query Frame = 1
Query: 4 GPAWFDEAAADGSAHAYAECSNRGHCDRGNGTCVCHDDFTGDACQRMKCPNDCSGNGKCLSMRQLGLMAV-DPDLIPSPASYGSIAGNPLTWDADAIYGCFCDWMGYQTGGPSYTNLSXXXXXDCSRKSCPTGHD 405
G AWFD AH ECSN G+CDR G CVC FTG AC RM CPN CSG+G C +++ + M+V + D P+ SYGSI N TWD D+ GC C+ GYQ DCS+ SCPTG D
Sbjct: 378 GKAWFDLPYDVQGAHQLVECSNAGYCDRAKGECVCDPRFTGAACNRMVCPNSCSGHGSCQTIQVMATMSVINGD--PTRLSYGSIPNNYPTWDFDSTQGCVCN-QGYQ-------------GYDCSQMSCPTGDD 496 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50442.12284.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig50442.12284.1 >prot_H-elongata_contig50442.12284.1 ID=prot_H-elongata_contig50442.12284.1|Name=mRNA_H-elongata_contig50442.12284.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=138bp QGPAWFDEAAADGSAHAYAECSNRGHCDRGNGTCVCHDDFTGDACQRMKCback to top mRNA from alignment at H-elongata_contig50442:1934..3359- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig50442.12284.1 ID=mRNA_H-elongata_contig50442.12284.1|Name=mRNA_H-elongata_contig50442.12284.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1426bp|location=Sequence derived from alignment at H-elongata_contig50442:1934..3359- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig50442:1934..3359- >mRNA_H-elongata_contig50442.12284.1 ID=mRNA_H-elongata_contig50442.12284.1|Name=mRNA_H-elongata_contig50442.12284.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=828bp|location=Sequence derived from alignment at H-elongata_contig50442:1934..3359- (Himanthalia elongata Himel1 dioecious)back to top |