mRNA_H-elongata_contig50423.12278.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig50423.12278.1
Unique NamemRNA_H-elongata_contig50423.12278.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig50423.12278.1 vs. uniprot
Match: A0A6H5KRV7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRV7_9PHAE)

HSP 1 Score: 417 bits (1072), Expect = 6.150e-138
Identity = 246/424 (58.02%), Postives = 279/424 (65.80%), Query Frame = 1 
Query:   16 AQALAALNEYHSAISETSVTIRNKPAYLMGILRKYKQGQRAPLGNGMNGGIATTPNAMGRMGAGPNGLAPSITARLEKLYASDFIRKDDVDQRCLDFFRDLTETEAEAAMDEFSQSDIASIRNKSAFLMSILSLPNPAHSTLHIAHPREPLGQ----GNADGSLRCYIVAARKKAGG-----------GMYGPAGYGPTPMMG-YGYMDPSMAGQGHYPDYYGGAYGRPP--PLYNAYGQPMHGFFPHHMPHMPNMHMGPPGHMEILPPSIQLRLDHLAAVGFCQPAEIDDRCRKFLREVPEHVALQSIDEFQSVDRTYIRKVSAYFMGVIRKHAEQYRASAA-------DAMPMSSYDMGVKRMREAGDY-SFGRVAKPTGIAEVMERLATAPAKVQEGIRDLLARGVAQEWDIDVRVTNALL 1209
            AQALAALNEYH+A+SETSV IRNKPAYLMGILRKYKQGQRAPLGNG  GG+ TTPNAMGRMGAGP+GL+PSI +RLEKLY S FI+K DVDQRC+ FFRDLTE EAEAAMDEF QSDI SIRNKSAFLMSIL                         G    +             G            MYG   +   P M  YGYMDPSM G   + ++YGG YG  P  PL+NAYGQPM  F P H+P      M   G  E+LP SIQLRLD LAA GFC   EIDDRCRKFLREVPEH+ALQ+I+EF S +R  IRKVSAY MGVIRKHA+ YR   A        A   S Y+ G+KR RE  D+ +  +  +P G + +MER+A APAKVQ GI DL+ +G+A EWDIDVRVTNA L
Sbjct:  178 AQALAALNEYHAAVSETSVNIRNKPAYLMGILRKYKQGQRAPLGNGTAGGMVTTPNAMGRMGAGPDGLSPSIASRLEKLYESGFIQKADVDQRCMVFFRDLTEKEAEAAMDEFGQSDITSIRNKSAFLMSILRXXXXXXXXXXXXXXXXXXXXXXXPGGRPAAXXXXXXXXXXXXXGMXXXXXXXXXXXMYGAHPFAGVPYMSPYGYMDPSMTGSVPFAEFYGGMYGHAPSMPLFNAYGQPMATFIPPHIP------MYQAGTTEMLPASIQLRLDQLAATGFCHAGEIDDRCRKFLREVPEHIALQAIEEFMSTERKNIRKVSAYLMGVIRKHADNYRDFVAVGTSGGPPAGLPSPYEAGLKRYREYNDFWAKQQQPRPQGCSALMERIAGAPAKVQAGITDLIEKGIAMEWDIDVRVTNAFL 595
[Close]
BLAST of mRNA_H-elongata_contig50423.12278.1 vs. uniprot
Match: D8LG90_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG90_ECTSI)

HSP 1 Score: 393 bits (1009), Expect = 9.140e-132
Identity = 231/408 (56.62%), Postives = 263/408 (64.46%), Query Frame = 1 
Query:   16 AQALAALNEYHSAISETSVTIRNKPAYLMGILRKYKQGQRAPLGNGMNGGIATTPNAMGRMGAGPNGLAPSITARLEKLYASDFIRKDDVDQRCLDFFRDLTETEAEAAMDEFSQSDIASIRNKSAFLMSILSLPNPAHSTLHIAHPREPLGQGNADGSLRCYIVAARKKAGGGMYGPAGYGPTPMMGYGYMDPSMAGQGHYPDYYGGAYGRPPP--LYNAYGQPMHGFFPHHMPHMPNMHMGPPGHMEILPPSIQLRLDHLAAVGFCQPAEIDDRCRKFLREVPEHVALQSIDEFQSVDRTYIRKVSAYFMGVIRKHAEQYRASAA-------DAMPMSSYDMGVKRMREAGDY-SFGRVAKPTGIAEVMERLATAPAKVQEGIRDLLARGVAQEWDIDVRVTNALL 1209
            AQALAALNEYH+A+SETSV IRNKPAYLMGILRKYKQGQRAPLGNG  GG+ TTPNAMGRMGAG +GL+PSI +RLEKLY S FI+K DVDQRC+ FFRDLTE EAEAAMDEF QSDI SIRNKSAFLMSIL                                                                  + H+ D+YGG YG  PP  L+NAYGQPM  F P HMP      M   G  E+LP SIQLRLD LAA GFC   EIDDRCRKFLREVPEH+ALQ+I+EF S +R  IRKVSAY MGVIRKHA+ YR   A        A   S Y+ G+KR+RE  D+ +  +  +P G + ++ER+A APAKVQ GI DL+ +G+A EWDIDVRVTNA L
Sbjct:   17 AQALAALNEYHAAVSETSVNIRNKPAYLMGILRKYKQGQRAPLGNGTAGGMVTTPNAMGRMGAGTDGLSPSIASRLEKLYESGFIQKADVDQRCMVFFRDLTEKEAEAAMDEFGQSDITSIRNKSAFLMSIL------------------------------------------------------------------RRHHQDFYGGMYGHAPPMPLFNAYGQPMATFIPPHMP------MYQAGTTEMLPASIQLRLDQLAATGFCHAGEIDDRCRKFLREVPEHIALQAIEEFMSTERKNIRKVSAYLMGVIRKHADNYRGFVAVGTSGGPPAGLPSPYEAGLKRIREYNDFWAKQQQPRPQGGSALLERIAGAPAKVQAGITDLIEKGIAMEWDIDVRVTNAFL 352
[Close]
BLAST of mRNA_H-elongata_contig50423.12278.1 vs. uniprot
Match: A0A835Z7I3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7I3_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 5.470e-10
Identity = 55/159 (34.59%), Postives = 80/159 (50.31%), Query Frame = 1 
Query:   28 AALNEYHSAISETSVTIRN-KPAYLMGILRKYKQGQRAPLGNGMNGGIATTPN-----------------------AMGRMG------AGPNGLAPSITARLEKLYASDFIRKDDVDQRCLDFFRDLTETEAEAAMDEFS-QSDIASIRNKSAFLMSIL 411
            AALNEY   I++    IRN K AYL+G+LRKY+     P                                     A GRM       AGP+GL   +  +LE+LY  + +R+D +D RC+D  R++TE+EA AAM+E + + D+A+ R+ +  L+SIL
Sbjct:   48 AALNEYAYGIADAGPAIRNNKGAYLLGVLRKYQASTLPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGRMPMRAMPQAGPDGLTRPVKIKLEQLYGMNVVRRDQMDGRCMDTLREMTESEALAAMNEVAGRRDVAAARDPTELLLSIL 206
[Close]
BLAST of mRNA_H-elongata_contig50423.12278.1 vs. uniprot
Match: A0A7S0LZI5_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0LZI5_9CRYP)

HSP 1 Score: 68.9 bits (167), Expect = 3.910e-9
Identity = 41/123 (33.33%), Postives = 71/123 (57.72%), Query Frame = 1 
Query:   73 TIRNKPAYLMGILRKYKQGQRAPLGNGMNGGIATTPNAMGRMGAGPN----------GLAPSITARLEKLYASDFIRKDDVDQRCLDFFRDLTETEAEAAMDEFSQSDIASIRNKSAFLMSIL 411
            +IRNK A+L G++++++     PLGN      A +  +MG  G G            G+ P + ARLE ++AS  +R++++DQRCL+  R L E      + +F+++D++SI +K+ F M I+
Sbjct:  145 SIRNKSAFLAGVMKRFRT--ENPLGN------ALSAPSMGAYGPGLGLSSSFSGDTAGMIPGVQARLEAIFASGKVRREELDQRCLEQLRSLPEHVGLEVVGKFAEADLSSINSKAGFFMGII 259
[Close]
BLAST of mRNA_H-elongata_contig50423.12278.1 vs. uniprot
Match: A0A7S2LAC6_9STRA (Hypothetical protein (Fragment) n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LAC6_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 4.380e-8
Identity = 43/130 (33.08%), Postives = 70/130 (53.85%), Query Frame = 1 
Query:   31 ALNEYHSAISETSVTIRNKPAYLMGILRKYKQGQRAPLGNGMNGGIATTPNAMGRMGAGPNG--LAPSITARLEKLYASDFIRKDDVDQRCLDFFRDLTETEAEAAMDEFSQSDIASIRNKSAFLMSILS 414
            AL+EY+ A++    +IRN+ AYL G+L++Y                      +GR+G  P G  L P++  R+ +L  S F  ++D+++R L   + L E EA AAMDE + +   +IRN  ++ M IL+
Sbjct:  306 ALSEYNDAVTTKGSSIRNRQAYLHGVLKRYM-------------------TILGRVGGTPMGEALTPAVKERMTRLVDSGFCSQEDLNERVLSKIKMLPEKEALAAMDELATAKRDAIRNFGSYFMGILN 416
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50423.12278.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KRV7_9PHAE6.150e-13858.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LG90_ECTSI9.140e-13256.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z7I3_9STRA5.470e-1034.59Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S0LZI5_9CRYP3.910e-933.33Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A7S2LAC6_9STRA4.380e-833.08Hypothetical protein (Fragment) n=2 Tax=Leptocylin... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig50423contigH-elongata_contig50423:276..3422 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score395.6
Seed ortholog evalue2.8e-107
Seed eggNOG ortholog2880.D8LG90
EggNOG OGs2D0MM@1,2SEQG@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-17_004180.1
Exons8
Model size1209
Cds size1209
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig50423.12278.1prot_H-elongata_contig50423.12278.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig50423 276..3422 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930828.9000564-CDS-H-elongata_contig50423:275..4761622930828.9000564-CDS-H-elongata_contig50423:275..476Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50423 276..476 +
1691679588.2158864-CDS-H-elongata_contig50423:275..4761691679588.2158864-CDS-H-elongata_contig50423:275..476Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50423 276..476 +
1622930828.9181378-CDS-H-elongata_contig50423:699..7911622930828.9181378-CDS-H-elongata_contig50423:699..791Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50423 700..791 +
1691679588.2283125-CDS-H-elongata_contig50423:699..7911691679588.2283125-CDS-H-elongata_contig50423:699..791Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50423 700..791 +
1622930828.9350607-CDS-H-elongata_contig50423:1066..11861622930828.9350607-CDS-H-elongata_contig50423:1066..1186Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50423 1067..1186 +
1691679588.2376666-CDS-H-elongata_contig50423:1066..11861691679588.2376666-CDS-H-elongata_contig50423:1066..1186Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50423 1067..1186 +
1622930828.9570038-CDS-H-elongata_contig50423:1494..15941622930828.9570038-CDS-H-elongata_contig50423:1494..1594Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50423 1495..1594 +
1691679588.2473032-CDS-H-elongata_contig50423:1494..15941691679588.2473032-CDS-H-elongata_contig50423:1494..1594Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50423 1495..1594 +
1622930828.9739454-CDS-H-elongata_contig50423:1868..21911622930828.9739454-CDS-H-elongata_contig50423:1868..2191Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50423 1869..2191 +
1691679588.262928-CDS-H-elongata_contig50423:1868..21911691679588.262928-CDS-H-elongata_contig50423:1868..2191Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50423 1869..2191 +
1622930828.9919252-CDS-H-elongata_contig50423:2336..24451622930828.9919252-CDS-H-elongata_contig50423:2336..2445Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50423 2337..2445 +
1691679588.272016-CDS-H-elongata_contig50423:2336..24451691679588.272016-CDS-H-elongata_contig50423:2336..2445Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50423 2337..2445 +
1622930829.0065002-CDS-H-elongata_contig50423:2765..29211622930829.0065002-CDS-H-elongata_contig50423:2765..2921Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50423 2766..2921 +
1691679588.2809832-CDS-H-elongata_contig50423:2765..29211691679588.2809832-CDS-H-elongata_contig50423:2765..2921Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50423 2766..2921 +
1622930829.02314-CDS-H-elongata_contig50423:3314..34221622930829.02314-CDS-H-elongata_contig50423:3314..3422Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50423 3315..3422 +
1691679588.289575-CDS-H-elongata_contig50423:3314..34221691679588.289575-CDS-H-elongata_contig50423:3314..3422Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50423 3315..3422 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig50423.12278.1

>prot_H-elongata_contig50423.12278.1 ID=prot_H-elongata_contig50423.12278.1|Name=mRNA_H-elongata_contig50423.12278.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=403bp
MLDGAAQALAALNEYHSAISETSVTIRNKPAYLMGILRKYKQGQRAPLGN
GMNGGIATTPNAMGRMGAGPNGLAPSITARLEKLYASDFIRKDDVDQRCL
DFFRDLTETEAEAAMDEFSQSDIASIRNKSAFLMSILSLPNPAHSTLHIA
HPREPLGQGNADGSLRCYIVAARKKAGGGMYGPAGYGPTPMMGYGYMDPS
MAGQGHYPDYYGGAYGRPPPLYNAYGQPMHGFFPHHMPHMPNMHMGPPGH
MEILPPSIQLRLDHLAAVGFCQPAEIDDRCRKFLREVPEHVALQSIDEFQ
SVDRTYIRKVSAYFMGVIRKHAEQYRASAADAMPMSSYDMGVKRMREAGD
YSFGRVAKPTGIAEVMERLATAPAKVQEGIRDLLARGVAQEWDIDVRVTN
ALL
back to top

mRNA from alignment at H-elongata_contig50423:276..3422+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig50423.12278.1 ID=mRNA_H-elongata_contig50423.12278.1|Name=mRNA_H-elongata_contig50423.12278.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3147bp|location=Sequence derived from alignment at H-elongata_contig50423:276..3422+ (Himanthalia elongata Himel1 dioecious)
ATGTTGGACGGTGCTGCGCAGGCACTGGCGGCCCTTAACGAGTACCATTC
CGCGATATCGGAGACCAGCGTGACCATCCGAAATAAGCCCGCGTACCTTA
TGGGGATCCTGCGCAAATATAAGCAGGGGCAGCGAGCGCCGCTGGGGAAC
GGGATGAACGGGGGCATCGCCACGACTCCGAACGCGATGGGGCGGATGGG
GGTGAGCGAGGACCGATAACTTAGACTCACTTTGGAGAGCGTAGCTTAAG
TGATGTTTGCTGTTGATCTACGGCTTCTTTAGGTTTGGTCTTCGAACGAC
GCAATAGTTATAGTATTTGGCTGACGAATCGCATCGCACCGCACCGCACC
GACCGCTTCGGCCGTGCCGACCGTACCGCTTCGATCGGACCGCCTCGATC
GCTCGCGCGTACGTTTCCTTCTAGGCGGGGCCAAACGGGCTTGCGCCGTC
CATTACGGCCCGTTTGGAAAAGCTGTACGCTAGCGATTTCATCAGGAAGG
ACGACGTGGACCAGAGGTGTGGACCAGAAGTGTTCTGCAGCCGCAGGTGT
AGGGGCGTGCTTGGTAGCTAGTTATATCCTGAAGCGATTTAGTTATTTAT
TTCTTCGTTCTTTGTCCCAGTTCAGGCCCAGGGGAAAGGGGAAAGAGGGA
AGAGGGTGGAGCCGGTGACGCTGCGCGCATGCCCCCTCCTGAAAAAAATG
TTTAACGGCTGAGGCCGACATGCGGTGACGCTTCTCGGAGCGCGCAAATA
GTTGGTTTAACCATGTAAATTCGCGCGTATTACGCCAACAGATGTCTGGA
CTTCTTCCGAGATCTTACTGAAACGGAGGCAGAGGCGGCGATGGACGAGT
TCAGCCAGAGCGACATCGCCTCCATCCGGAACAAGAGTGCCTTCCTCATG
TCCATACTAAGGTGTCCATCCTAAGGCACGCCTCGCGTTTTTGTTTGTTT
AAATTGTTTTTGTTGATGTTTTACTTGGTGTTGCTATGGATGTCGTACCG
TTCTTTTAGACTTTGTGTGGGAGCATTCCTAGTATTTTGATGTGTGGTAA
ATTTCCTCGTATTTTACTTAAACGCAGATTTCCTCGATTTTTCTAGATAC
GAAATAAGAAATAGTTATGACCATTGATTTCTCCATCACCACAATAGGAT
AATATTATATATATAGGAATATGTGCTTATATAGGAATATGACTTGCCTA
ACCTCACGAACGTTGCGAGTTTGCCTAACCCAGCACATAGCACATTGCAC
ATTGCACATCCCAGAGAACCTCTCGGCCAGGGTAATGCTGATGGTTCTCT
GCGCTGCTATATAGTAGCTGTCTGATAAGTTTGTAGAATAATTGGGACAG
GGGAAAATTATTTTCCCTTTTCAGCTGACCACGAGCAGAAGGCAACCAAA
TCCAGTTGATCTTCTGCAAAATGTGTGACCAACAACAACAACAATCAATT
ATCTAAATGAATGAGATCACGAATAATAGTGTAATAATGCTGTACTGTAT
TAATAGTGTTTCGCTGTCCCCTGTCCCCTGCCCTCTCTCCCCTTTCTGCT
TTTTCTGTTCCTATTTTTGCTCCACCGCAGGAAACACCACGAGGCGCGCA
AGAAGGCTGGAGGGGGAATGTACGGTCCAGCCGGCTACGGACCTACCCCG
ATGATGGGTTACGGCTACATGGACCCGTCAATGGCTGGCCAGGGTCATTA
CCCGGACTACTACGGGGGCGCTTACGGCCGCCCCCCTCCCCTTTACAATG
CCTACGGCCAACCGATGCACGGGTTTTTTCCGCACCACATGCCTCATATG
CCGAATATGCATATGGGCCCGCCCGGACACATGGAAATACTGCCCCCAAG
CATTCAGCTCCGCCTCGATCATCTGGCCGCCGTCGGATTCTGCCAGCCAG
CCGAAATAGACGACAGGTGTGGAAGTGAAGGGATTTTTAGGGGGAAATAG
ATTGTGGGGTTTGAGAAGAGATTTTGAGGTCTCAGGCTTTTTTTTTTTTT
TGGTTCAATGTGTCCATGCGGTGAACTGAAGGTCGTTTCGGCTGTTGTTG
TATGTGTTCAGGTGCCGCAAGTTCTTGAGGGAGGTGCCGGAGCACGTGGC
GCTGCAATCGATCGACGAGTTTCAGAGCGTGGATCGGACCTACATCAGAA
AAGTGTCTGCCTACTTTATGGTGAGAGCTTTATACAGTATACGGTATTAA
TACTAATATTACTATGTATAGTATAGTATAGTATAGTATAGTAGTCTAAT
ATCAATATAATAGTACATTGCCCTACAGTATTAGTATTATATAGCTATTA
GAGTATAGGTGCTGGAAATAGAGCGTCCTTTGAGAAATGCCGCAAACTGA
AAGTTATCCCTCTCGCTATTAATAGGACACAAATACTATACTATACTATA
CTATATAGTGCTATATAGTGCTATACATAATATATATATATATATTCCGT
GTGTGTGTGTGTGTGTTTGTGTAAATATATTGGTTGACAGGGCGTTATTC
GCAAACACGCGGAGCAGTACCGTGCATCAGCTGCCGACGCGATGCCCATG
TCTTCGTACGATATGGGCGTCAAACGCATGCGCGAAGCCGGCGACTACTC
CTTCGGCAGAGTCGCGAAGCCCACGGGGATAGCGGAGGTCATGGAGGTGT
GTGTGTGTGTGTGCGTGTGCTTGTCGGGGTTTTGGTGGCGCTGCTCTTTG
TTTTTTCGAACGGATGTGCGCTATGTGGATGATCACCGATTACCGTGGTG
TGCCCTTCGTGGGACTGTCACAACCAAAAATTGCCTCTTGCATTTGTGAT
CATATGTACCGGTGCGATTTTGATTATTTCGATGTACCCTCGGTGGATTT
TCGATAGTTTCGATTAACTGGAAAACGTAAGCCACCATCCGTCAGCCGAG
AGCCAGCCCTAATATAGCGTATTTTGCTTTTCGCTCCTCTTAACATAGGC
TCTCACCATCCGCTGCCCGTTACCCTCCACCCTTCTGATATATTTGTGGT
AATTTTCTGCCGGTTTTGTGGTGGTCGTCGGTCGTTCAGCGTCTCGCGAC
CGCTCCCGCTAAAGTCCAAGAGGGCATCCGAGATTTGCTGGCGAGGGGCG
TAGCACAGGAGTGGGACATCGACGTCCGGGTTACAAACGCTCTCCTG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig50423:276..3422+

>mRNA_H-elongata_contig50423.12278.1 ID=mRNA_H-elongata_contig50423.12278.1|Name=mRNA_H-elongata_contig50423.12278.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2418bp|location=Sequence derived from alignment at H-elongata_contig50423:276..3422+ (Himanthalia elongata Himel1 dioecious)
ATGTTGGACGGTGCTGCGCAGGCACTGGCGGCCCTTAACGAGTACCATTC
CGCGATATCGGAGACCAGCGTGACCATCCGAAATAAGCCCGCGTACCTTA
TGGGGATCCTGCGCAAATATAAGCAGGGGCAGCGAGCGCCGCTGGGGAAC
GGGATGAACGGGGGCATCGCCACGACTCCGAACGCGATGGGGCGGATGGG
GATGTTGGACGGTGCTGCGCAGGCACTGGCGGCCCTTAACGAGTACCATT
CCGCGATATCGGAGACCAGCGTGACCATCCGAAATAAGCCCGCGTACCTT
ATGGGGATCCTGCGCAAATATAAGCAGGGGCAGCGAGCGCCGCTGGGGAA
CGGGATGAACGGGGGCATCGCCACGACTCCGAACGCGATGGGGCGGATGG
GGGCGGGGCCAAACGGGCTTGCGCCGTCCATTACGGCCCGTTTGGAAAAG
CTGTACGCTAGCGATTTCATCAGGAAGGACGACGTGGACCAGAGGCGGGG
CCAAACGGGCTTGCGCCGTCCATTACGGCCCGTTTGGAAAAGCTGTACGC
TAGCGATTTCATCAGGAAGGACGACGTGGACCAGAGATGTCTGGACTTCT
TCCGAGATCTTACTGAAACGGAGGCAGAGGCGGCGATGGACGAGTTCAGC
CAGAGCGACATCGCCTCCATCCGGAACAAGAGTGCCTTCCTCATGTCCAT
ACTAAGATGTCTGGACTTCTTCCGAGATCTTACTGAAACGGAGGCAGAGG
CGGCGATGGACGAGTTCAGCCAGAGCGACATCGCCTCCATCCGGAACAAG
AGTGCCTTCCTCATGTCCATACTAAGTTTGCCTAACCCAGCACATAGCAC
ATTGCACATTGCACATCCCAGAGAACCTCTCGGCCAGGGTAATGCTGATG
GTTCTCTGCGCTGCTATATAGTAGCTTTTGCCTAACCCAGCACATAGCAC
ATTGCACATTGCACATCCCAGAGAACCTCTCGGCCAGGGTAATGCTGATG
GTTCTCTGCGCTGCTATATAGTAGCTGCGCGCAAGAAGGCTGGAGGGGGA
ATGTACGGTCCAGCCGGCTACGGACCTACCCCGATGATGGGTTACGGCTA
CATGGACCCGTCAATGGCTGGCCAGGGTCATTACCCGGACTACTACGGGG
GCGCTTACGGCCGCCCCCCTCCCCTTTACAATGCCTACGGCCAACCGATG
CACGGGTTTTTTCCGCACCACATGCCTCATATGCCGAATATGCATATGGG
CCCGCCCGGACACATGGAAATACTGCCCCCAAGCATTCAGCTCCGCCTCG
ATCATCTGGCCGCCGTCGGATTCTGCCAGCCAGCCGAAATAGACGACAGG
CGCGCAAGAAGGCTGGAGGGGGAATGTACGGTCCAGCCGGCTACGGACCT
ACCCCGATGATGGGTTACGGCTACATGGACCCGTCAATGGCTGGCCAGGG
TCATTACCCGGACTACTACGGGGGCGCTTACGGCCGCCCCCCTCCCCTTT
ACAATGCCTACGGCCAACCGATGCACGGGTTTTTTCCGCACCACATGCCT
CATATGCCGAATATGCATATGGGCCCGCCCGGACACATGGAAATACTGCC
CCCAAGCATTCAGCTCCGCCTCGATCATCTGGCCGCCGTCGGATTCTGCC
AGCCAGCCGAAATAGACGACAGGTGCCGCAAGTTCTTGAGGGAGGTGCCG
GAGCACGTGGCGCTGCAATCGATCGACGAGTTTCAGAGCGTGGATCGGAC
CTACATCAGAAAAGTGTCTGCCTACTTTATGGTGCCGCAAGTTCTTGAGG
GAGGTGCCGGAGCACGTGGCGCTGCAATCGATCGACGAGTTTCAGAGCGT
GGATCGGACCTACATCAGAAAAGTGTCTGCCTACTTTATGGGCGTTATTC
GCAAACACGCGGAGCAGTACCGTGCATCAGCTGCCGACGCGATGCCCATG
TCTTCGTACGATATGGGCGTCAAACGCATGCGCGAAGCCGGCGACTACTC
CTTCGGCAGAGTCGCGAAGCCCACGGGGATAGCGGAGGTCATGGAGGGCG
TTATTCGCAAACACGCGGAGCAGTACCGTGCATCAGCTGCCGACGCGATG
CCCATGTCTTCGTACGATATGGGCGTCAAACGCATGCGCGAAGCCGGCGA
CTACTCCTTCGGCAGAGTCGCGAAGCCCACGGGGATAGCGGAGGTCATGG
AGCGTCTCGCGACCGCTCCCGCTAAAGTCCAAGAGGGCATCCGAGATTTG
CTGGCGAGGGGCGTAGCACAGGAGTGGGACATCGACGTCCGGGTTACAAA
CGCTCTCCTGCGTCTCGCGACCGCTCCCGCTAAAGTCCAAGAGGGCATCC
GAGATTTGCTGGCGAGGGGCGTAGCACAGGAGTGGGACATCGACGTCCGG
GTTACAAACGCTCTCCTG
back to top