mRNA_H-elongata_contig50415.12275.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig50415.12275.1 vs. uniprot
Match: A0A2S2P6A6_SCHGA (Zinc finger BED domain-containing protein 1 (Fragment) n=1 Tax=Schizaphis graminum TaxID=13262 RepID=A0A2S2P6A6_SCHGA) HSP 1 Score: 81.3 bits (199), Expect = 2.920e-13 Identity = 41/96 (42.71%), Postives = 61/96 (63.54%), Query Frame = 3
Query: 546 PVSPRVVIMNEWEAYKGAEVMEETVQRLGGPLGWWRQNEMLYPHIARLARKYLAVQASSAASERLFSQAGLVVTAKRNRMTGDTAADIIFLHESLK 833
P + R NE + Y V E T+ + PL WW++N YP+I++LA+KYL + ++S SER FS AG ++TAKRN ++G+TA +IFL + K
Sbjct: 410 PDNERCSEQNELDKY----VKENTINKNACPLAWWKENSSRYPNISKLAKKYLCIPSTSTPSERAFSTAGNIITAKRNCLSGETAKWLIFLSHNTK 501
BLAST of mRNA_H-elongata_contig50415.12275.1 vs. uniprot
Match: A0A6G0VRT1_APHCR (Dimer_Tnp_hAT domain-containing protein (Fragment) n=2 Tax=Aphidinae TaxID=133076 RepID=A0A6G0VRT1_APHCR) HSP 1 Score: 81.3 bits (199), Expect = 3.030e-13 Identity = 41/98 (41.84%), Postives = 61/98 (62.24%), Query Frame = 3
Query: 546 PVSPRVVIMNEWEAYKGAEVMEETVQRLGGPLGWWRQNEMLYPHIARLARKYLAVQASSAASERLFSQAGLVVTAKRNRMTGDTAADIIFLHESLKHK 839
P + R NE + Y V E T+ + PL WW++N YP+I +LA+KYL + ++S SER FS AG ++TAKRN ++G+TA +IFL + K +
Sbjct: 427 PDNERCSEQNELDKY----VKENTINKNACPLAWWKENSSRYPNILKLAKKYLCIPSTSTPSERAFSTAGNIITAKRNCLSGETAKWLIFLSHNTKQQ 520
BLAST of mRNA_H-elongata_contig50415.12275.1 vs. uniprot
Match: A0A8M1KFB0_CLUHA (E3 SUMO-protein ligase ZBED1-like n=1 Tax=Clupea harengus TaxID=7950 RepID=A0A8M1KFB0_CLUHA) HSP 1 Score: 80.9 bits (198), Expect = 4.700e-13 Identity = 73/256 (28.52%), Postives = 119/256 (46.48%), Query Frame = 3
Query: 84 VRDTAGLMETDMYKRFHPGDAIRVDRAPINTNNPLRIPRMASVLDPRTKSLAWAYTEDIESDFYGPIVIE---LDAMIQLEEKEAL----AVASTAEDDASPPPPEKVNRVGASAAQTEGGSMTRHRDGFSLSSLIQKAAARKRLENADEMASPAANVQKAPVSPRVVIMNEWEAYKGAEVMEETVQRLGGPLGWWRQNEMLYPHIARLARKYLAVQASSAASERLFSQAGLVVTAKRNRMTGDTAADIIFLHESL 830
+RD + D+ KR+ ++ R R AS LDPR K L + EDI D +G +V E L+ +++EE E+ T E + S PP++ RV S A LEN P A Q+ P+S E ++GA + + PL WWR+N+++YP +++L ++Y + A+S ++ER+FS AG +VTA+R+ +T + ++FLH++L
Sbjct: 413 IRDIKKAINEDLSKRY-------------TSDLERRTLRSASALDPRFKGLPFLSEEDIV-DTFGRVVAEAASLEQQVRVEEDESQHNTEGTHPTEEQNQSSSPPKR--RVAPS---------------LQFPXXXXXXAPSSLLENLLGNTFPIATAQQ-PISAYAKAEEEVTKFRGAPPIPLSED----PLSWWRKNDVMYPLLSKLGKRYFCIPATSVSAERVFSTAGDIVTAQRSTLTPEHVDQLLFLHKNL 632
BLAST of mRNA_H-elongata_contig50415.12275.1 vs. uniprot
Match: UPI0015F8C7E4 (zinc finger BED domain-containing protein DAYSLEEPER-like n=1 Tax=Oncorhynchus keta TaxID=8018 RepID=UPI0015F8C7E4) HSP 1 Score: 75.5 bits (184), Expect = 1.220e-12 Identity = 42/89 (47.19%), Postives = 55/89 (61.80%), Query Frame = 3
Query: 567 IMNEWEAYKGAEVMEETVQRLGGPLGWWRQNEMLYPHIARLARKYLAVQASSAASERLFSQAGLVVTAKRNRMTGDTAADIIFLHESLK 833
I E +YK A ++ G PL WW+ NE YPHIA +AR YLAV +S SER+FS AG +VTAKR+ ++ D +IFL +LK
Sbjct: 90 IKEEVASYKAAS----SIPVGGEPLAWWKNNECKYPHIAMMARCYLAVPGTSDPSERVFSTAGDIVTAKRSTLSPDNVGILIFLKMNLK 174
BLAST of mRNA_H-elongata_contig50415.12275.1 vs. uniprot
Match: UPI0020143E0A (zinc finger BED domain-containing protein 4-like n=4 Tax=Euteleostomi TaxID=117571 RepID=UPI0020143E0A) HSP 1 Score: 78.2 bits (191), Expect = 1.480e-12 Identity = 44/94 (46.81%), Postives = 60/94 (63.83%), Query Frame = 3
Query: 552 SPRVVIMNEWEAYKGAEVMEETVQRLGGPLGWWRQNEMLYPHIARLARKYLAVQASSAASERLFSQAGLVVTAKRNRMTGDTAADIIFLHESLK 833
+P +I E +Y A + TV G PL WW+ NE YPHIA++AR YLAV SS SER+FS AG +VTAKR+ ++ D ++FL ++LK
Sbjct: 247 TPADIIKEEVASYLAASGI--TVD--GDPLTWWKSNECKYPHIAKMARCYLAVPGSSVPSERVFSTAGDIVTAKRSTLSPDNVDILVFLKKNLK 336
BLAST of mRNA_H-elongata_contig50415.12275.1 vs. uniprot
Match: UPI001C59CA0C (zinc finger BED domain-containing protein 4-like n=1 Tax=Cyprinus carpio TaxID=7962 RepID=UPI001C59CA0C) HSP 1 Score: 77.8 bits (190), Expect = 1.670e-12 Identity = 40/90 (44.44%), Postives = 61/90 (67.78%), Query Frame = 3
Query: 564 VIMNEWEAYKGAEVMEETVQRLGGPLGWWRQNEMLYPHIARLARKYLAVQASSAASERLFSQAGLVVTAKRNRMTGDTAADIIFLHESLK 833
V+ +E + YK A+V+ PL WW+ NE YPH+++LA+ YLAVQA+S ASER+FS AG +VTA+R ++ + +IFL +++K
Sbjct: 231 VVKDEIQLYKMAKVISVD----SNPLKWWKDNEHQYPHLSKLAKHYLAVQATSVASERVFSTAGDIVTAQRAALSPENVDILIFLKKNMK 316
BLAST of mRNA_H-elongata_contig50415.12275.1 vs. uniprot
Match: J9KFH3_ACYPI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=J9KFH3_ACYPI) HSP 1 Score: 79.0 bits (193), Expect = 1.790e-12 Identity = 41/99 (41.41%), Postives = 62/99 (62.63%), Query Frame = 3
Query: 546 PVSPRVVIMNEWEAYKGAEVMEETVQRLGGPLGWWRQNEMLYPHIARLARKYLAVQASSAASERLFSQAGLVVTAKRNRMTGDTAADIIFL-HESLKHK 839
P + R NE + Y V E T+ + PL WW++N Y +I++LA+KYL + ++S SER FS AG ++TAKRN ++G+TA +IFL H + +H
Sbjct: 435 PDNERCSEQNELDKY----VKENTINKNACPLAWWKENSSRYSNISKLAKKYLCIPSTSTPSERAFSNAGNIITAKRNCLSGETAKWLIFLSHNTKQHN 529
BLAST of mRNA_H-elongata_contig50415.12275.1 vs. uniprot
Match: A0A8C2FYL1_CYPCA (BED-type domain-containing protein n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C2FYL1_CYPCA) HSP 1 Score: 79.0 bits (193), Expect = 2.030e-12 Identity = 40/90 (44.44%), Postives = 62/90 (68.89%), Query Frame = 3
Query: 564 VIMNEWEAYKGAEVMEETVQRLGGPLGWWRQNEMLYPHIARLARKYLAVQASSAASERLFSQAGLVVTAKRNRMTGDTAADIIFLHESLK 833
V+ +E + YK A+V+ PL WW+ NE YPH+++LA++YLAVQA+S ASER+FS AG +VTA+R ++ + +IFL +++K
Sbjct: 547 VVKDEIQLYKMAKVISVD----SNPLKWWKDNEHQYPHLSKLAKRYLAVQATSVASERVFSTAGDIVTAQRAALSPENVDILIFLKKNMK 632
BLAST of mRNA_H-elongata_contig50415.12275.1 vs. uniprot
Match: UPI0011B655F8 (zinc finger BED domain-containing protein 1-like n=1 Tax=Gadus morhua TaxID=8049 RepID=UPI0011B655F8) HSP 1 Score: 75.1 bits (183), Expect = 5.030e-12 Identity = 34/66 (51.52%), Postives = 48/66 (72.73%), Query Frame = 3
Query: 636 PLGWWRQNEMLYPHIARLARKYLAVQASSAASERLFSQAGLVVTAKRNRMTGDTAADIIFLHESLK 833
PL WWR NE YPHIA+LAR+YLAV +S SER+FS AG +V A R+R++ + +IFL ++++
Sbjct: 167 PLAWWRSNEHKYPHIAKLARRYLAVPGTSVPSERVFSTAGDIVHASRSRLSAENVDKLIFLQKNMR 232
BLAST of mRNA_H-elongata_contig50415.12275.1 vs. uniprot
Match: A0A1A7XRV2_9TELE (Dimer_Tnp_hAT domain-containing protein (Fragment) n=1 Tax=Iconisemion striatum TaxID=60296 RepID=A0A1A7XRV2_9TELE) HSP 1 Score: 73.9 bits (180), Expect = 5.320e-12 Identity = 35/65 (53.85%), Postives = 49/65 (75.38%), Query Frame = 3
Query: 636 PLGWWRQNEMLYPHIARLARKYLAVQASSAASERLFSQAGLVVTAKRNRMTGDTAADIIFLHESL 830
PL WWR NE YP +ARLA++YL V +S ASER+FS AG +VTAKR+ ++ D +++FLH++L
Sbjct: 116 PLTWWRSNEREYPLLARLAKQYLCVPGTSIASERVFSTAGDIVTAKRSCLSPDHVNELLFLHKNL 180 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50415.12275.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig50415.12275.1 >prot_H-elongata_contig50415.12275.1 ID=prot_H-elongata_contig50415.12275.1|Name=mRNA_H-elongata_contig50415.12275.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=248bp METDMYKRFHPGDAIRVDRAPINTNNPLRIPRMASVLDPRTKSLAWAYTEback to top mRNA from alignment at H-elongata_contig50415:97..1672- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig50415.12275.1 ID=mRNA_H-elongata_contig50415.12275.1|Name=mRNA_H-elongata_contig50415.12275.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1576bp|location=Sequence derived from alignment at H-elongata_contig50415:97..1672- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig50415:97..1672- >mRNA_H-elongata_contig50415.12275.1 ID=mRNA_H-elongata_contig50415.12275.1|Name=mRNA_H-elongata_contig50415.12275.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1488bp|location=Sequence derived from alignment at H-elongata_contig50415:97..1672- (Himanthalia elongata Himel1 dioecious)back to top |