mRNA_H-elongata_contig50395.12274.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig50395.12274.1
Unique NamemRNA_H-elongata_contig50395.12274.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig50395.12274.1 vs. uniprot
Match: A0A6H5JVI5_9PHAE (BHLH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVI5_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 6.730e-30
Identity = 123/343 (35.86%), Postives = 163/343 (47.52%), Query Frame = 1 
Query:    1 VNERFEQLLRVLEEAEATSGLEPAPTPEGQTAANACVNGRRVEVLSRTITVLKKLMREKTKSLSVF---AED-------GNSHG------EGKSGDSAIAS---------------------------GVMEANSAAATGS-TQAPPT-------------------QQHIALRLH-EHSSLSMPTGFMGMPNIGVSQMNASLAAAGIPQGLSGQPVFIAVPVFMPPGQGLSSV----------DNPGQAPGAT-VLAPVV---------------NVTPETGEKAVVDAGGANVPMTKELK---MPPDVNLESMISLQMPQFVTEVLATDEGDEKPTHAVCA 750
            VNE+F+QLL+VLEEAEATSGLEP    +G+TAA+AC+NGRRVEVLSRTI V+KKL+RE+ ++L+     A+D       G S+G      EG   D    S                            V+++N AAA G+  QA                        H+A+ +   H S+ M  GF G+P   V          GIP G  G P+F AVP+++P GQG+  V          ++  Q P AT V AP +                           DA  A VP     K   +P  +  +SM++LQMPQFVT+ L+ +EG EKPTHAVCA
Sbjct:  234 VNEKFDQLLQVLEEAEATSGLEPPAAKDGKTAAHACINGRRVEVLSRTIQVVKKLLRERREALAGVPPPADDTLAAVAAGISNGWQEETAEGPVLDGGFRSEVEENXXXXXXXXXXXXXXXXXXXXTRDVIDSNEAAAEGADAQAEAAIAATMVXXXEGXXAKHHSVMHHVAMSVSGHHPSMMMAPGFTGVPGHPVPS-----PPHGIP-GHPGGPIFFAVPMYIPQGQGMPPVAASTATTAAAEHAAQVPAATAVAAPSLAXXXXXXXXXXXXXXXXXXXXXXXXXXDATEA-VPAPSGKKTWAVPAGMGYQSMMTLQMPQFVTQALSGEEGSEKPTHAVCA 569
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BLAST of mRNA_H-elongata_contig50395.12274.1 vs. uniprot
Match: D7FS24_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS24_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 2.090e-8
Identity = 55/176 (31.25%), Postives = 75/176 (42.61%), Query Frame = 1 
Query:  319 HIALRLH-EHSSLSMPTGFMGMPNIGVSQMNASLAAAGIPQGLSGQPVFIAVPVFMPPGQGLSSV----------------------------DNPGQAPGATVLAPVVNVTPETGEKAVVDAGGANVPMTKELK---MPPDVNLESMISLQMPQFVTEVLATDEGDEKPTHAVCA 750
            H+A+ +   H S+ M  GF G+P   V          GIP G  G P+F AVP+++P GQG+ +                                                       VVDA  A VP     K   +P  +  +SM++LQMPQFVT+ L+ +EG+EKPTHAVCA
Sbjct:    3 HVAMSVSGHHPSMMMAPGFTGVPGHSVPSPQH-----GIP-GHPGGPIFFAVPMYIPQGQGMPAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPGVVDATEA-VPAPSGKKTWAVPAGMGYQSMMTLQMPQFVTQALSGEEGNEKPTHAVCA 171
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50395.12274.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JVI5_9PHAE6.730e-3035.86BHLH domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FS24_ECTSI2.090e-831.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig50395contigH-elongata_contig50395:3090..3842 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionbHLH domain protein
Ec32 orthologEc-16_004620.1
Exons1
Model size753
Cds size753
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930828.4813542-CDS-H-elongata_contig50395:3089..38421622930828.4813542-CDS-H-elongata_contig50395:3089..3842Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50395 3090..3842 +
1691679588.0676413-CDS-H-elongata_contig50395:3089..38421691679588.0676413-CDS-H-elongata_contig50395:3089..3842Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50395 3090..3842 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig50395.12274.1prot_H-elongata_contig50395.12274.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig50395 3090..3842 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig50395.12274.1

>prot_H-elongata_contig50395.12274.1 ID=prot_H-elongata_contig50395.12274.1|Name=mRNA_H-elongata_contig50395.12274.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=251bp
VNERFEQLLRVLEEAEATSGLEPAPTPEGQTAANACVNGRRVEVLSRTIT
VLKKLMREKTKSLSVFAEDGNSHGEGKSGDSAIASGVMEANSAAATGSTQ
APPTQQHIALRLHEHSSLSMPTGFMGMPNIGVSQMNASLAAAGIPQGLSG
QPVFIAVPVFMPPGQGLSSVDNPGQAPGATVLAPVVNVTPETGEKAVVDA
GGANVPMTKELKMPPDVNLESMISLQMPQFVTEVLATDEGDEKPTHAVCA
*
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mRNA from alignment at H-elongata_contig50395:3090..3842+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig50395.12274.1 ID=mRNA_H-elongata_contig50395.12274.1|Name=mRNA_H-elongata_contig50395.12274.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=753bp|location=Sequence derived from alignment at H-elongata_contig50395:3090..3842+ (Himanthalia elongata Himel1 dioecious)
GTGAATGAGAGGTTCGAGCAGCTGCTGCGAGTGCTGGAAGAAGCCGAGGC
TACCTCAGGCCTTGAGCCGGCGCCCACGCCCGAGGGCCAGACGGCCGCCA
ACGCTTGCGTCAACGGCAGACGCGTGGAAGTACTTTCCCGCACGATAACC
GTACTGAAAAAACTAATGCGCGAAAAGACGAAGTCTCTTTCGGTTTTCGC
TGAAGACGGAAACAGCCATGGAGAGGGTAAATCGGGCGATAGTGCGATCG
CCTCCGGTGTGATGGAAGCCAATTCGGCAGCCGCCACGGGATCGACCCAG
GCGCCACCCACGCAGCAGCACATTGCCCTGCGCTTGCACGAACATTCATC
GCTGTCGATGCCAACAGGTTTCATGGGAATGCCAAACATTGGCGTGTCTC
AAATGAATGCCTCGCTGGCGGCAGCGGGGATTCCTCAAGGATTGTCAGGC
CAACCCGTCTTCATCGCAGTCCCAGTGTTCATGCCGCCCGGTCAAGGATT
GTCGTCCGTCGACAACCCAGGCCAGGCGCCAGGGGCTACGGTGCTTGCAC
CGGTCGTCAATGTCACACCTGAGACCGGAGAAAAGGCCGTGGTCGATGCT
GGCGGGGCCAATGTTCCCATGACCAAAGAATTGAAGATGCCACCTGATGT
CAATCTCGAGTCAATGATTTCTTTGCAGATGCCACAGTTCGTCACCGAGG
TACTGGCTACGGACGAGGGAGACGAAAAGCCCACTCACGCCGTGTGTGCG
TAG
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Coding sequence (CDS) from alignment at H-elongata_contig50395:3090..3842+

>mRNA_H-elongata_contig50395.12274.1 ID=mRNA_H-elongata_contig50395.12274.1|Name=mRNA_H-elongata_contig50395.12274.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1506bp|location=Sequence derived from alignment at H-elongata_contig50395:3090..3842+ (Himanthalia elongata Himel1 dioecious)
GTGAATGAGAGGTTCGAGCAGCTGCTGCGAGTGCTGGAAGAAGCCGAGGC
TACCTCAGGCCTTGAGCCGGCGCCCACGCCCGAGGGCCAGACGGCCGCCA
ACGCTTGCGTCAACGGCAGACGCGTGGAAGTACTTTCCCGCACGATAACC
GTACTGAAAAAACTAATGCGCGAAAAGACGAAGTCTCTTTCGGTTTTCGC
TGAAGACGGAAACAGCCATGGAGAGGGTAAATCGGGCGATAGTGCGATCG
CCTCCGGTGTGATGGAAGCCAATTCGGCAGCCGCCACGGGATCGACCCAG
GCGCCACCCACGCAGCAGCACATTGCCCTGCGCTTGCACGAACATTCATC
GCTGTCGATGCCAACAGGTTTCATGGGAATGCCAAACATTGGCGTGTCTC
AAATGAATGCCTCGCTGGCGGCAGCGGGGATTCCTCAAGGATTGTCAGGC
CAACCCGTCTTCATCGCAGTCCCAGTGTTCATGCCGCCCGGTCAAGGATT
GTCGTCCGTCGACAACCCAGGCCAGGCGCCAGGGGCTACGGTGCTTGCAC
CGGTCGTCAATGTCACACCTGAGACCGGAGAAAAGGCCGTGGTCGATGCT
GGCGGGGCCAATGTTCCCATGACCAAAGAATTGAAGATGCCACCTGATGT
CAATCTCGAGTCAATGATTTCTTTGCAGATGCCACAGTTCGTCACCGAGG
TACTGGCTACGGACGAGGGAGACGAAAAGCCCACTCACGCCGTGTGTGCG
TAGGTGAATGAGAGGTTCGAGCAGCTGCTGCGAGTGCTGGAAGAAGCCGA
GGCTACCTCAGGCCTTGAGCCGGCGCCCACGCCCGAGGGCCAGACGGCCG
CCAACGCTTGCGTCAACGGCAGACGCGTGGAAGTACTTTCCCGCACGATA
ACCGTACTGAAAAAACTAATGCGCGAAAAGACGAAGTCTCTTTCGGTTTT
CGCTGAAGACGGAAACAGCCATGGAGAGGGTAAATCGGGCGATAGTGCGA
TCGCCTCCGGTGTGATGGAAGCCAATTCGGCAGCCGCCACGGGATCGACC
CAGGCGCCACCCACGCAGCAGCACATTGCCCTGCGCTTGCACGAACATTC
ATCGCTGTCGATGCCAACAGGTTTCATGGGAATGCCAAACATTGGCGTGT
CTCAAATGAATGCCTCGCTGGCGGCAGCGGGGATTCCTCAAGGATTGTCA
GGCCAACCCGTCTTCATCGCAGTCCCAGTGTTCATGCCGCCCGGTCAAGG
ATTGTCGTCCGTCGACAACCCAGGCCAGGCGCCAGGGGCTACGGTGCTTG
CACCGGTCGTCAATGTCACACCTGAGACCGGAGAAAAGGCCGTGGTCGAT
GCTGGCGGGGCCAATGTTCCCATGACCAAAGAATTGAAGATGCCACCTGA
TGTCAATCTCGAGTCAATGATTTCTTTGCAGATGCCACAGTTCGTCACCG
AGGTACTGGCTACGGACGAGGGAGACGAAAAGCCCACTCACGCCGTGTGT
GCGTAG
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