mRNA_H-elongata_contig50392.12272.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig50392.12272.1
Unique NamemRNA_H-elongata_contig50392.12272.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50392.12272.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig50392contigH-elongata_contig50392:2193..3751 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size618
Cds size618
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930828.3390954-CDS-H-elongata_contig50392:2192..26541622930828.3390954-CDS-H-elongata_contig50392:2192..2654Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50392 2193..2654 -
1691679588.0279744-CDS-H-elongata_contig50392:2192..26541691679588.0279744-CDS-H-elongata_contig50392:2192..2654Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50392 2193..2654 -
1622930828.3553855-CDS-H-elongata_contig50392:3595..37511622930828.3553855-CDS-H-elongata_contig50392:3595..3751Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50392 3596..3751 -
1691679588.0368626-CDS-H-elongata_contig50392:3595..37511691679588.0368626-CDS-H-elongata_contig50392:3595..3751Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50392 3596..3751 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig50392.12272.1prot_H-elongata_contig50392.12272.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig50392 2193..3751 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig50392.12272.1

>prot_H-elongata_contig50392.12272.1 ID=prot_H-elongata_contig50392.12272.1|Name=mRNA_H-elongata_contig50392.12272.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=206bp
QGAVFVAICKEDYRASASAVETRLGDTPLAAPVLAEAVERTGTGGGTAAF
LEIKPSLETSTAPSISSHGPSRIDASGRAQRSIAPSATASPPRATANGSR
GTINGDEATIDAVAIRPQPSTNASADPNLNDGGDCSDPISVFGPRVHAGG
VGIIPESTAVMTLVPTPSAEGVQTAGGWAASRPFGLDTTPLAGSVHGNGK
TIGNAP
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mRNA from alignment at H-elongata_contig50392:2193..3751-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig50392.12272.1 ID=mRNA_H-elongata_contig50392.12272.1|Name=mRNA_H-elongata_contig50392.12272.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1559bp|location=Sequence derived from alignment at H-elongata_contig50392:2193..3751- (Himanthalia elongata Himel1 dioecious)
CAGGGTGCTGTGTTCGTGGCTATCTGCAAGGAAGACTATCGCGCCTCCGC
GTCCGCCGTCGAGACTCGCCTCGGGGATACACCTCTCGCAGCCCCCGTTT
TGGCGGAGGCGGTAGAGAGAACGGGGACAGGGGGCGGCACAGCGGCGTTC
TTGGAGGTGTGATGATGTAGGCAGGGGAGGGGGGAGGGAAGCTGCTGCCA
CTCGTGTCGTGGCTTGAACCTAGCCCGTCAACTGCTTCTGGTTAATATTG
TAAGGGCTGCCGGGATGATGGTGGTGGATGCTTTATATATTTTTTGTTTT
TCGCGAAGGATATAGGTCACTAACTGTTATTAACGCCGTGTAGCGAGTGA
GGTTGGTGCTACGATCGTTAGGGGGAAAGGGGGTTATGATGAACCTGTTC
CTAGGTCCTTAGGGAAAGAGTGGGGTGGGGTTGGAATAAAAACAGCCCCT
CTTGGGAAAACACGGTGATACTGATCCCCTTCCAAGCAGGGGGTTAACAT
TTTGATACCCCACTCCGTTCTCTCGAAGACGCATGGCCAATGGTCTATCA
TCGAAGGCATATAAAAATTGAGTTCGCCCCCCCCCCCCCCCCCCCCCCCC
CAAAACACCCCCCCCCCCCCCCCCCCCTCTCCACCCCCCCCCCNNNNNNN
NNNTTCTCCCAAAGACCAAGGGCCATGGTTCTATCACCAAAGGCATAAAA
AAATTGAGTCCCCCCCCCCCCCCCGCCTCCCACCTAGATAACGCCCCCCC
CTCGACTTCTTCTTACCGGATCATGCGCTGTTGGGGTGACGAGCCCCGCT
GTTTTGTGTCCCCTATCTAGGCTACCATTAATCTTGTTAGTTGCAAAAGT
GTAGTTCACAGTCCTTGCCCCCGTGCTATCTCGATATCTCGTCGCGATAT
CTCGTCGTGATATCTCGTCGTGATATCTCGTCGTGGTATCTCGTGTTCCT
CCCCTTGCGAGGCTTTCGCCTTGCTTGTCTCGTAACACTACAGCTTCATA
CACATACACCCGATGCCCCATCCATTCTGTGCATCACGCGCGAATATGTC
CACCCTCGCCCTCATCTCGGTAAACATGTTGGGTCGCCGCCACGCAGATC
AAGCCTAGCCTAGAAACCTCGACGGCCCCGTCCATATCAAGCCACGGGCC
TTCGAGGATCGATGCCTCGGGTCGCGCCCAACGTTCGATCGCTCCTTCCG
CAACAGCCTCTCCTCCCCGCGCAACAGCCAATGGTAGCAGGGGCACCATC
AACGGCGATGAAGCAACGATCGATGCCGTGGCTATCAGACCCCAGCCGAG
CACTAACGCTAGCGCTGACCCTAACCTCAACGATGGCGGTGACTGTTCCG
ATCCGATATCCGTCTTCGGCCCGAGGGTTCATGCAGGAGGGGTGGGAATA
ATTCCAGAAAGCACCGCTGTTATGACACTGGTGCCGACTCCATCGGCGGA
AGGAGTGCAGACGGCGGGGGGATGGGCAGCGTCGCGGCCTTTCGGGTTGG
ATACCACTCCTCTAGCTGGGTCGGTGCACGGGAACGGGAAGACTATAGGG
AATGCGCCG
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Coding sequence (CDS) from alignment at H-elongata_contig50392:2193..3751-

>mRNA_H-elongata_contig50392.12272.1 ID=mRNA_H-elongata_contig50392.12272.1|Name=mRNA_H-elongata_contig50392.12272.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1236bp|location=Sequence derived from alignment at H-elongata_contig50392:2193..3751- (Himanthalia elongata Himel1 dioecious)
CAGGGTGCTGTGTTCGTGGCTATCTGCAAGGAAGACTATCGCGCCTCCGC
GTCCGCCGTCGAGACTCGCCTCGGGGATACACCTCTCGCAGCCCCCGTTT
TGGCGGAGGCGGTAGAGAGAACGGGGACAGGGGGCGGCACAGCGGCGTTC
TTGGAGCAGGGTGCTGTGTTCGTGGCTATCTGCAAGGAAGACTATCGCGC
CTCCGCGTCCGCCGTCGAGACTCGCCTCGGGGATACACCTCTCGCAGCCC
CCGTTTTGGCGGAGGCGGTAGAGAGAACGGGGACAGGGGGCGGCACAGCG
GCGTTCTTGGAGATCAAGCCTAGCCTAGAAACCTCGACGGCCCCGTCCAT
ATCAAGCCACGGGCCTTCGAGGATCGATGCCTCGGGTCGCGCCCAACGTT
CGATCGCTCCTTCCGCAACAGCCTCTCCTCCCCGCGCAACAGCCAATGGT
AGCAGGGGCACCATCAACGGCGATGAAGCAACGATCGATGCCGTGGCTAT
CAGACCCCAGCCGAGCACTAACGCTAGCGCTGACCCTAACCTCAACGATG
GCGGTGACTGTTCCGATCCGATATCCGTCTTCGGCCCGAGGGTTCATGCA
GGAGGGGTGGGAATAATTCCAGAAAGCACCGCTGTTATGACACTGGTGCC
GACTCCATCGGCGGAAGGAGTGCAGACGGCGGGGGGATGGGCAGCGTCGC
GGCCTTTCGGGTTGGATACCACTCCTCTAGCTGGGTCGGTGCACGGGAAC
GGGAAGACTATAGGGAATGCGCCGATCAAGCCTAGCCTAGAAACCTCGAC
GGCCCCGTCCATATCAAGCCACGGGCCTTCGAGGATCGATGCCTCGGGTC
GCGCCCAACGTTCGATCGCTCCTTCCGCAACAGCCTCTCCTCCCCGCGCA
ACAGCCAATGGTAGCAGGGGCACCATCAACGGCGATGAAGCAACGATCGA
TGCCGTGGCTATCAGACCCCAGCCGAGCACTAACGCTAGCGCTGACCCTA
ACCTCAACGATGGCGGTGACTGTTCCGATCCGATATCCGTCTTCGGCCCG
AGGGTTCATGCAGGAGGGGTGGGAATAATTCCAGAAAGCACCGCTGTTAT
GACACTGGTGCCGACTCCATCGGCGGAAGGAGTGCAGACGGCGGGGGGAT
GGGCAGCGTCGCGGCCTTTCGGGTTGGATACCACTCCTCTAGCTGGGTCG
GTGCACGGGAACGGGAAGACTATAGGGAATGCGCCG
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