mRNA_H-elongata_contig50334.12267.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig50334.12267.1
Unique NamemRNA_H-elongata_contig50334.12267.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig50334.12267.1 vs. uniprot
Match: D8LFD8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFD8_ECTSI)

HSP 1 Score: 203 bits (516), Expect = 1.270e-55
Identity = 216/484 (44.63%), Postives = 252/484 (52.07%), Query Frame = 1 
Query:    1 QVAALSGFTTIDAEVEFSRS--------RESDAKDLLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXENMSGAKEGGKTRQVLPVFLTFRFRREPLKK-PTEDGSVIGSGLLGGGI----------ETVKVDLDAR-------------------EDEGES--EENDSGGEQIAVLKGRVALNCPTGHIVHVNGGGRGGGEGRKRAGSRGGEFDV-KGGGEKGRKRPKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFEDSDRDDDAEPEEGLDYDPKTLVSYTICGGIGYDRPEVLLRAVVYARGDGPACVMPPPDDEEDPE------------------SVFRDQEDVFDCNVDGPALASVGRALGLHY-DPPESELDPGS----NAEVFLANSR------------------GDSGVVDGGMTLSDLVWWIMLFPFFEKEFDMVEVVASSVFG-DDGSDSDDG 1203
            QVAAL+GFTTIDAEVEFSR+          S   D                       XXXXXXXXXXXXXXXXXXXXX                PVFLTFRFRREPL+  P E     G   +GGG           E + + LD                     ++EG S  E+  S     A +     ++C  G     +  G+   EGRKRAGSRG E +  +GG +KGRKRP  XXXXXXXXXXXXXXXXXXX                 + D     E +EGLDY+P+TLVSY+I GGIGYD P  LL+A+VYARGDGPACVMPP                          S   DQEDVFDC+V+GPALA++GRALGLH  DPP S+ D  S      +V + +S                   G+ G   G MT SDLVWW++LFPFFEKEFD+VEVVASSVFG DD  DSDDG
Sbjct:  120 QVAALNGFTTIDAEVEFSRTGTDSTATAAASAGTDGPALTSAAATRGKPTLSEGTVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAESPVFLTFRFRREPLRSGPAEPSRGEGGRAVGGGDARDHDHQEAGEVIDLALDDXXXXXXXXXXXXXXXXXPKGDNEGGSLFEKKGSATAVPAKIAAGKDVSCDGGXXXXXDSHGK---EGRKRAGSRGRESEEGRGGNDKGRKRPXXXXXXXXXXXXXXXXXXXXXGKQGV------------NGDAKQCEEDDEGLDYEPRTLVSYSISGGIGYDAPATLLQALVYARGDGPACVMPPXXXXXXXXXXXXXXXXXXXXXXXXXGSACNDQEDVFDCDVNGPALAALGRALGLHTEDPPTSDSDSDSASDDGGDVRMKDSGARPSASAKGPEKEPDTADGEPGKGIGSMTQSDLVWWLLLFPFFEKEFDVVEVVASSVFGEDDLDDSDDG 588
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BLAST of mRNA_H-elongata_contig50334.12267.1 vs. uniprot
Match: A0A6H5K398_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K398_9PHAE)

HSP 1 Score: 181 bits (458), Expect = 2.090e-47
Identity = 103/201 (51.24%), Postives = 123/201 (61.19%), Query Frame = 1 
Query:  709 DSDRDDDAEPEEGLDYDPKTLVSYTICGGIGYDRPEVLLRAVVYARGDGPACVMPPPDDEEDPE-----------------SVFRDQEDVFDCNVDGPALASVGRALGLHY-DPP------ESELDPGSNAEVFLANSR----------------GDSGVVDGGMTLSDLVWWIMLFPFFEKEFDMVEVVASSVFGDDGSD 1191
            D D     E +EGLDY+P+TLVSY+I GGIGYD P  LL+A+VYARGDGPACVMPP                         SV  DQEDVFDC+V+GPALA++GRALGLH  DPP      +S  D G +  +  + +R                G+ G   G MT SDLVWW++LFPFFEKEFD+VEVVASSVFG+D SD
Sbjct:  373 DGDAKQCEEDDEGLDYEPRTLVSYSISGGIGYDAPATLLQALVYARGDGPACVMPPXXXXXXXXXXXXXXXXXXXXXXXGGSVCNDQEDVFDCDVNGPALAALGRALGLHTEDPPTSDSHSDSSSDDGGDVRMKDSGARPSASAKGPEKESDTADGEPGKGIGSMTQSDLVWWLLLFPFFEKEFDLVEVVASSVFGEDDSD 573
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50334.12267.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LFD8_ECTSI1.270e-5544.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K398_9PHAE2.090e-4751.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig50334contigH-elongata_contig50334:343..3123 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score200.3
Seed ortholog evalue1.4e-48
Seed eggNOG ortholog2880.D8LFD8
EggNOG OGs2EXJ4@1,2SZ7F@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_005910.1
Exons3
Model size1287
Cds size1002
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig50334.12267.1prot_H-elongata_contig50334.12267.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig50334 409..2904 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930827.8296905-UTR-H-elongata_contig50334:342..4081622930827.8296905-UTR-H-elongata_contig50334:342..408Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig50334 343..408 -
1691679587.7792454-UTR-H-elongata_contig50334:342..4081691679587.7792454-UTR-H-elongata_contig50334:342..408Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig50334 343..408 -
1622930827.8989618-UTR-H-elongata_contig50334:2904..31231622930827.8989618-UTR-H-elongata_contig50334:2904..3123Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig50334 2905..3123 -
1691679587.8314319-UTR-H-elongata_contig50334:2904..31231691679587.8314319-UTR-H-elongata_contig50334:2904..3123Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig50334 2905..3123 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930827.8456624-CDS-H-elongata_contig50334:408..7311622930827.8456624-CDS-H-elongata_contig50334:408..731Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50334 409..731 -
1691679587.7976377-CDS-H-elongata_contig50334:408..7311691679587.7976377-CDS-H-elongata_contig50334:408..731Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50334 409..731 -
1622930827.8648484-CDS-H-elongata_contig50334:1819..19821622930827.8648484-CDS-H-elongata_contig50334:1819..1982Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50334 1820..1982 -
1691679587.8137012-CDS-H-elongata_contig50334:1819..19821691679587.8137012-CDS-H-elongata_contig50334:1819..1982Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50334 1820..1982 -
1622930827.883261-CDS-H-elongata_contig50334:2388..29041622930827.883261-CDS-H-elongata_contig50334:2388..2904Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50334 2389..2904 -
1691679587.8231401-CDS-H-elongata_contig50334:2388..29041691679587.8231401-CDS-H-elongata_contig50334:2388..2904Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50334 2389..2904 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig50334.12267.1

>prot_H-elongata_contig50334.12267.1 ID=prot_H-elongata_contig50334.12267.1|Name=mRNA_H-elongata_contig50334.12267.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=334bp
MSGAKEGGKTRQVLPVFLTFRFRREPLKKPTEDGSVIGSGLLGGGIETVK
VDLDAREDEGESEENDSGGEQIAVLKGRVALNCPTGHIVHVNGGGRGGGE
GRKRAGSRGGEFDVKGGGEKGRKRPKGGRRRQEGDAGRDDTEEEGGGVDE
NGGAEDDPGGSFEDSDRDDDAEPEEGLDYDPKTLVSYTICGGIGYDRPEV
LLRAVVYARGDGPACVMPPPDDEEDPESVFRDQEDVFDCNVDGPALASVG
RALGLHYDPPESELDPGSNAEVFLANSRGDSGVVDGGMTLSDLVWWIMLF
PFFEKEFDMVEVVASSVFGDDGSDSDDGDCDSE*
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mRNA from alignment at H-elongata_contig50334:343..3123-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig50334.12267.1 ID=mRNA_H-elongata_contig50334.12267.1|Name=mRNA_H-elongata_contig50334.12267.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2781bp|location=Sequence derived from alignment at H-elongata_contig50334:343..3123- (Himanthalia elongata Himel1 dioecious)
CAGGTCGCCGCGTTGAGTGGCTTCACTACCATCGATGCCGAAGTCGAGTT
CTCGAGATCGCGTGAGTCTGACGCGAAGGACCTCCTCCTTCCTCTGCCGG
CAGCGTCGTCATCATCGTCATCGTCGTCATCATCGTCATCGTCGTCATCA
TCGTCATCATTAGCAGCGAACGGCGACCCGGAGGCGGAGAAAGAGGTCGA
GAAACGGGAACGAGAAAATATGTCTGGGGCAAAAGAAGGAGGAAAGACGC
GACAGGTTCTGCCCGTGTTTCTGACGTTCCGCTTCCGACGAGAACCGTTG
AAGAAACCAACCGAGGACGGGAGCGTCATCGGGTCGGGCCTGCTGGGCGG
CGGCATCGAAACGGTCAAGGTCGACCTTGACGCCAGGGAAGATGAGGGCG
AAAGCGAGGAGAACGATAGTGGTGGTGAGCAGATCGCGGTCCTGAAGGGC
CGAGTTGCCCTCAATTGCCCGACCGGGCACATCGTTCACGTTAATGGGGG
GGGCAGGGGGGGTGGCGAGGGTCGTAAGCGAGCAGGGTCGAGAGGCGGGG
AGTTCGACGTGAAAGGTGGCGGCGAGAAAGGGAGGAAGAGGCCCAAGGGG
GGGAGGAGGAGGCAAGAGGGAGACGCGGGACGCGACGACACCGAGGAAGA
AGGGGGGGGCGTGGACGAGAACGGTGGGGCCGAGGACGATCCGGGCGGGT
CGTTCGAAGACAGCGACCGCGATGACGACGCCGAGGTGCTTGAAAGTAGT
TATTTTGCTCTATCGGGTGTCCATGATGCACGACGGGGTGTTGTGCCCCC
ATTCTCTTCTTTTGGGCCGTTGTGCTCGAGGCCTCTTGTTCAGCGGACAT
CCTCAACATGTCAACCGAGGTTATATTACAGATTCATCTTAACGCTGCAT
TATAAGGCGTCCGGTTACTGTGGTGTTGCCTACTGAACCTACACAGGAGG
TGTCCGACAGCTCCCTTAAGTCGGCGCGAATGAACTAAAACTTTCTCGAG
TGAGCAGAATTGTGCGTGACGCCATCGAACTTCCCACAACCTTGTCACGG
CATAAACACCCCCGCCTATCTCTCGTATCTTGCGTGGCTACAGCGAACCT
GCCGCGCTCTCGCCCCTGACGCGTTTCGTTTATTTCCGCAGCCTGAGGAA
GGCCTCGACTACGACCCCAAGACTTTGGTATCGTACACGATCTGCGGCGG
AATAGGCTACGACCGCCCAGAGGTGCTCCTGCGGGCGGTGGTGTACGCGA
GAGGAGACGGCCCGGCGTGCGTCATGCCTCCTCCGGACGATGAAGAGGAT
CCTGGTGAAACTTGCTGTTGATTGGTTGTTCTTTTGGCCAATTAGTGCCG
CGATGTTTTGCGCGCTTTTTTTTCTTTCTTTCGGTGTTCCAAAATTACAG
CAATTGCGGCCGTCCTTATCGCTCCCGTGTCATATGGTGTATTTTATCAT
CCGTCTTTAGCGGTGGTAAGTGGTGATGCGGTGTGACCTTTATGTATAAG
TGTTCTCGCGAGCCCTATAGTGATGTCACGTCACAATGCGCTCGTACCGG
CACGGCTGGGGCCCTAATGGCGTGTAGAGACCATAAGCTGGCCCCAATCG
ATCTTTATCGCCTCCGGTACTGTCTGTGACTGTATCGCTACCAATAGTGG
GTGTGGGAAAAGAGAAACGCACAATGATTGTTCCATGGGGTTTACCTGAA
TAGGCTTCACCTGTTACTCAAGCTACCTTGAGGACTGCTGGCTCAGTGTC
GGTGGACTCTCGGTGGTAAACGCCATCGGTACGCAATTGTACGACCTGAT
GAAATCGGGATTGGCCCGATGGTGGTTGACGGTAGAGATGGACACCGTCG
CGGAAAGCAAGAGGATCGAGATGATCCCGGGAGTACGCACCAAATCAGCC
TGGATTGGGAGAATGATCAGGCTGATGCGGGACGGTACTGCCGAACCCGT
CTCGCGAGACATTTTTTTCAGGCGCGAAACGGGACAGGGAAAATTCAGCT
GGGCACAAGCTGGAGGCAACCAAATCCGGTTGATCCTTACTTTGCTTTAT
GTGATGACGTCATGACCACACGAACGGGGTACAAGAGCGCTTTATTCCCT
TGATAATCTATAATTGTGGCTGACTTCTTTTCGTGGCACGTAAAGGTAGA
GCGCATGTGTTATTTTTATTCCTCCGTAGATCGCGAACATAGCATTCGAC
CCTTTCGAGGGCGCATCTATATGGGGAATGCAGTGTAACCGTGGTTCGGA
AAAGCCACTATCGGGATTTTGATCGTTGCTGCCCCTCTTATCTTAACTTT
CCCCCCCTCTCCCCCACCTGCGGCCTCCTCTCAATGATTGATGATTGATG
ATCATTGATCGATGTCATATCGGGGTGTTAATTGCTGCGCAGAGAGCGTT
TTCCGCGACCAAGAAGACGTGTTCGATTGTAACGTCGACGGCCCGGCGTT
GGCATCCGTCGGGAGGGCGCTTGGGCTGCACTACGATCCGCCGGAGTCGG
AGTTGGACCCCGGCAGCAACGCCGAGGTATTCCTGGCCAATTCTAGAGGA
GACAGCGGTGTAGTCGACGGGGGAATGACACTGTCCGATTTGGTGTGGTG
GATCATGCTGTTTCCGTTTTTTGAGAAAGAGTTTGATATGGTGGAGGTGG
TTGCATCGAGCGTGTTCGGAGACGACGGTTCCGACTCGGACGACGGTGAT
TGTGACAGTGAGTAATAAGAGGATTGCAACGGCGGCGAGACTGGAATTAG
CAAGCGACGGGAAGCATGAGGGACAAGAGAG
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Coding sequence (CDS) from alignment at H-elongata_contig50334:343..3123-

>mRNA_H-elongata_contig50334.12267.1 ID=mRNA_H-elongata_contig50334.12267.1|Name=mRNA_H-elongata_contig50334.12267.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2004bp|location=Sequence derived from alignment at H-elongata_contig50334:343..3123- (Himanthalia elongata Himel1 dioecious)
ATGTCTGGGGCAAAAGAAGGAGGAAAGACGCGACAGGTTCTGCCCGTGTT
TCTGACGTTCCGCTTCCGACGAGAACCGTTGAAGAAACCAACCGAGGACG
GGAGCGTCATCGGGTCGGGCCTGCTGGGCGGCGGCATCGAAACGGTCAAG
GTCGACCTTGACGCCAGGGAAGATGAGGGCGAAAGCGAGGAGAACGATAG
TGGTGGTGAGCAGATCGCGGTCCTGAAGGGCCGAGTTGCCCTCAATTGCC
CGACCGGGCACATCGTTCACGTTAATGGGGGGGGCAGGGGGGGTGGCGAG
GGTCGTAAGCGAGCAGGGTCGAGAGGCGGGGAGTTCGACGTGAAAGGTGG
CGGCGAGAAAGGGAGGAAGAGGCCCAAGGGGGGGAGGAGGAGGCAAGAGG
GAGACGCGGGACGCGACGACACCGAGGAAGAAGGGGGGGGCGTGGACGAG
AACGGTGGGGCCGAGGACGATCCGGGCGGGTCGTTCGAAGACAGCGACCG
CGATGACGACGCCGAGATGTCTGGGGCAAAAGAAGGAGGAAAGACGCGAC
AGGTTCTGCCCGTGTTTCTGACGTTCCGCTTCCGACGAGAACCGTTGAAG
AAACCAACCGAGGACGGGAGCGTCATCGGGTCGGGCCTGCTGGGCGGCGG
CATCGAAACGGTCAAGGTCGACCTTGACGCCAGGGAAGATGAGGGCGAAA
GCGAGGAGAACGATAGTGGTGGTGAGCAGATCGCGGTCCTGAAGGGCCGA
GTTGCCCTCAATTGCCCGACCGGGCACATCGTTCACGTTAATGGGGGGGG
CAGGGGGGGTGGCGAGGGTCGTAAGCGAGCAGGGTCGAGAGGCGGGGAGT
TCGACGTGAAAGGTGGCGGCGAGAAAGGGAGGAAGAGGCCCAAGGGGGGG
AGGAGGAGGCAAGAGGGAGACGCGGGACGCGACGACACCGAGGAAGAAGG
GGGGGGCGTGGACGAGAACGGTGGGGCCGAGGACGATCCGGGCGGGTCGT
TCGAAGACAGCGACCGCGATGACGACGCCGAGCCTGAGGAAGGCCTCGAC
TACGACCCCAAGACTTTGGTATCGTACACGATCTGCGGCGGAATAGGCTA
CGACCGCCCAGAGGTGCTCCTGCGGGCGGTGGTGTACGCGAGAGGAGACG
GCCCGGCGTGCGTCATGCCTCCTCCGGACGATGAAGAGGATCCTGCCTGA
GGAAGGCCTCGACTACGACCCCAAGACTTTGGTATCGTACACGATCTGCG
GCGGAATAGGCTACGACCGCCCAGAGGTGCTCCTGCGGGCGGTGGTGTAC
GCGAGAGGAGACGGCCCGGCGTGCGTCATGCCTCCTCCGGACGATGAAGA
GGATCCTGAGAGCGTTTTCCGCGACCAAGAAGACGTGTTCGATTGTAACG
TCGACGGCCCGGCGTTGGCATCCGTCGGGAGGGCGCTTGGGCTGCACTAC
GATCCGCCGGAGTCGGAGTTGGACCCCGGCAGCAACGCCGAGGTATTCCT
GGCCAATTCTAGAGGAGACAGCGGTGTAGTCGACGGGGGAATGACACTGT
CCGATTTGGTGTGGTGGATCATGCTGTTTCCGTTTTTTGAGAAAGAGTTT
GATATGGTGGAGGTGGTTGCATCGAGCGTGTTCGGAGACGACGGTTCCGA
CTCGGACGACGGTGATTGTGACAGTGAGTAAAGAGCGTTTTCCGCGACCA
AGAAGACGTGTTCGATTGTAACGTCGACGGCCCGGCGTTGGCATCCGTCG
GGAGGGCGCTTGGGCTGCACTACGATCCGCCGGAGTCGGAGTTGGACCCC
GGCAGCAACGCCGAGGTATTCCTGGCCAATTCTAGAGGAGACAGCGGTGT
AGTCGACGGGGGAATGACACTGTCCGATTTGGTGTGGTGGATCATGCTGT
TTCCGTTTTTTGAGAAAGAGTTTGATATGGTGGAGGTGGTTGCATCGAGC
GTGTTCGGAGACGACGGTTCCGACTCGGACGACGGTGATTGTGACAGTGA
GTAA
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