mRNA_H-elongata_contig50307.12262.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig50307.12262.1 vs. uniprot
Match: D7G5T1_ECTSI (Oxidoreductase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5T1_ECTSI) HSP 1 Score: 91.3 bits (225), Expect = 8.130e-19 Identity = 47/74 (63.51%), Postives = 57/74 (77.03%), Query Frame = -1
Query: 13 SEGRTPVASTDAPPSKLVVDVVVIGSGAGGGCAAGVLASKGLKVAVLEKGGLYDQNDFAAFSEMEAYRRLYERQ 234
S P + + P +L VDVVV+GSGAGGGCAAG LA++GL+VAVLEKGGLY +DFA FSEMEAY+ +YE Q
Sbjct: 382 SASAAPTSPHETLPQQLTVDVVVVGSGAGGGCAAGALAARGLRVAVLEKGGLYGAHDFARFSEMEAYKDMYEGQ 455
BLAST of mRNA_H-elongata_contig50307.12262.1 vs. uniprot
Match: A0A6H5JQQ5_9PHAE (4Fe-4S ferredoxin-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQQ5_9PHAE) HSP 1 Score: 90.1 bits (222), Expect = 2.010e-18 Identity = 46/69 (66.67%), Postives = 55/69 (79.71%), Query Frame = -1
Query: 13 PVASTDAPPSKLVVDVVVIGSGAGGGCAAGVLASKGLKVAVLEKGGLYDQNDFAAFSEMEAYRRLYERQ 219
P+ + P +L VDVVV+GSGAGGGCAAG LA++GL+VAVLEKGGLY DFA FSEMEAY+ +YE Q
Sbjct: 479 PIPPHEPLPQQLTVDVVVVGSGAGGGCAAGALAARGLRVAVLEKGGLYGAPDFAGFSEMEAYKDMYEGQ 547
BLAST of mRNA_H-elongata_contig50307.12262.1 vs. uniprot
Match: W7T4J7_9STRA (Long-chain-alcohol oxidase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T4J7_9STRA) HSP 1 Score: 70.5 bits (171), Expect = 1.500e-11 Identity = 36/58 (62.07%), Postives = 44/58 (75.86%), Query Frame = -1
Query: 16 KLVVDVVVIGSGAGGGCAAGVLASKGLKVAVLEKGGLYDQNDFAAFSEMEAYRRLYER 189
+L DVV++GSGAGGG AAGVL + GLKV VLEKGG Y + DFA F E+++ R L ER
Sbjct: 275 ELSCDVVIVGSGAGGGTAAGVLTAAGLKVVVLEKGGYYSEEDFAGFGELDSERALCER 332
BLAST of mRNA_H-elongata_contig50307.12262.1 vs. uniprot
Match: UPI000D65957B (FAD-dependent oxidoreductase n=1 Tax=Microbacterium TaxID=33882 RepID=UPI000D65957B) HSP 1 Score: 66.2 bits (160), Expect = 4.400e-10 Identity = 44/80 (55.00%), Postives = 51/80 (63.75%), Query Frame = -1
Query: 22 GSVGPRESEGRTPVASTDAPPSKLVVD--VVVIGSGAGGGCAAGVLASKGLKVAVLEKGGLYDQNDFAAFSEMEAYRRLY 255
G GPR+ + TP P S+L +D VVV+GSGAGGG AA VLAS+GL V VLEKGG YD DF SE+ RLY
Sbjct: 135 GPPGPRQ-DASTPPLHPQTPESELSLDCDVVVVGSGAGGGTAAAVLASEGLDVVVLEKGGYYDDRDFDG-SELGGLARLY 212
BLAST of mRNA_H-elongata_contig50307.12262.1 vs. uniprot
Match: A0A0P7BZS5_9ACTN (Long-chain-alcohol oxidase n=4 Tax=Frankia TaxID=1854 RepID=A0A0P7BZS5_9ACTN) HSP 1 Score: 65.9 bits (159), Expect = 6.000e-10 Identity = 41/79 (51.90%), Postives = 49/79 (62.03%), Query Frame = -1
Query: 22 GSVGPRESEGRTPVAS-TDAPPSKLVVDVVVIGSGAGGGCAAGVLASKGLKVAVLEKGGLYDQNDFAAFSEMEAYRRLY 255
G +GPR+ R P+A T + L DVVV+GSGAGGG AAGVLA GL V VLE+GG YD DF E+ R+Y
Sbjct: 135 GPLGPRDGAPRPPLAPLTPTADTTLDCDVVVVGSGAGGGTAAGVLAGAGLDVVVLERGGYYDDADFDG-GELSGLSRMY 212
BLAST of mRNA_H-elongata_contig50307.12262.1 vs. uniprot
Match: UPI0003769182 (GMC family oxidoreductase N-terminal domain-containing protein n=1 Tax=Frankia discariae TaxID=365528 RepID=UPI0003769182) HSP 1 Score: 64.7 bits (156), Expect = 1.520e-9 Identity = 44/82 (53.66%), Postives = 48/82 (58.54%), Query Frame = -1
Query: 16 GSVGPRESEGRTPVASTDAPPSKLVVD--VVVIGSGAGGGCAAGVLASKGLKVAVLEKGGLYDQNDFAAFSEMEAYRRLYER 255
G GPR R P+A D P S D VVV+GSGAGGG AAGVLA GL V VLE+GG YD DF E+ RLY R
Sbjct: 136 GPPGPRADASRPPLAPLD-PTSGTTFDCDVVVVGSGAGGGTAAGVLAGAGLDVVVLERGGYYDDADFDG-GELSGLSRLYAR 215
BLAST of mRNA_H-elongata_contig50307.12262.1 vs. uniprot
Match: UPI001CD26ACE (GMC family oxidoreductase N-terminal domain-containing protein n=1 Tax=Nocardia sp. alder85J TaxID=2862949 RepID=UPI001CD26ACE) HSP 1 Score: 64.3 bits (155), Expect = 2.070e-9 Identity = 38/60 (63.33%), Postives = 41/60 (68.33%), Query Frame = -1
Query: 22 APPSKLVVDVVVIGSGAGGGCAAGVLASKGLKVAVLEKGGLYDQNDFAAFSEMEAYRRLY 201
A P+ L DVVVIGSGAGGG AA VLA GL V VLE+G YD DF A E +A RRLY
Sbjct: 154 ATPATLSCDVVVIGSGAGGGTAAAVLAGAGLDVIVLERGNYYDDRDFGA-GEFDALRRLY 212
BLAST of mRNA_H-elongata_contig50307.12262.1 vs. uniprot
Match: A0A1S1Q8A9_9ACTN (Long-chain-alcohol oxidase n=2 Tax=Frankia sp. Cc1.17 TaxID=573497 RepID=A0A1S1Q8A9_9ACTN) HSP 1 Score: 63.2 bits (152), Expect = 5.260e-9 Identity = 39/67 (58.21%), Postives = 43/67 (64.18%), Query Frame = -1
Query: 22 TPVASTDAPPSKLVVDVVVIGSGAGGGCAAGVLASKGLKVAVLEKGGLYDQNDFAAFSEMEAYRRLY 222
TP+A T L DVVV+GSGAGGG AAGVLA GL V VLE+GG YD DF E+ RRLY
Sbjct: 166 TPIADTT-----LDCDVVVVGSGAGGGTAAGVLAGAGLDVVVLERGGYYDDADFDG-GELSGLRRLY 226
BLAST of mRNA_H-elongata_contig50307.12262.1 vs. uniprot
Match: UPI000407C23A (GMC family oxidoreductase n=2 Tax=Solimonas TaxID=413435 RepID=UPI000407C23A) HSP 1 Score: 62.8 bits (151), Expect = 6.960e-9 Identity = 33/65 (50.77%), Postives = 43/65 (66.15%), Query Frame = -1
Query: 19 ASTDAPPSKLVVDVVVIGSGAGGGCAAGVLASKGLKVAVLEKGGLYDQNDFAAFSEMEAYRRLYE 213
AST L DVV++GSGAGGG AA +L++ GL V +LE+GGLY DF A E +Y +LY+
Sbjct: 20 ASTLTNDETLEADVVIVGSGAGGGTAAEILSAAGLSVLMLEEGGLYTSRDFKALDEFSSYSKLYQ 84
BLAST of mRNA_H-elongata_contig50307.12262.1 vs. uniprot
Match: A0A7R9YDU7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YDU7_9STRA) HSP 1 Score: 62.0 bits (149), Expect = 1.320e-8 Identity = 31/60 (51.67%), Postives = 43/60 (71.67%), Query Frame = -1
Query: 19 PPSKLVVDVVVIGSGAGGGCAAGVLASKGLKVAVLEKGGLYDQNDFAAFSEMEAYRRLYE 198
PP+ DVV++GSGAGGG AA VL KG +VAV+EKG + + +FA +SEM+A+ +E
Sbjct: 194 PPAPKPYDVVIVGSGAGGGVAASVLTQKGFRVAVVEKGQHFGETNFAQWSEMQAFENAFE 253 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50307.12262.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig50307.12262.1 >prot_H-elongata_contig50307.12262.1 ID=prot_H-elongata_contig50307.12262.1|Name=mRNA_H-elongata_contig50307.12262.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=107bp MVVYLALVQPTIRLHLRERSEIILIVEASFFQYRHLQALRCEDPCGAPATback to top mRNA from alignment at H-elongata_contig50307:1734..2126+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig50307.12262.1 ID=mRNA_H-elongata_contig50307.12262.1|Name=mRNA_H-elongata_contig50307.12262.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=393bp|location=Sequence derived from alignment at H-elongata_contig50307:1734..2126+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig50307:1734..2126+ >mRNA_H-elongata_contig50307.12262.1 ID=mRNA_H-elongata_contig50307.12262.1|Name=mRNA_H-elongata_contig50307.12262.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=642bp|location=Sequence derived from alignment at H-elongata_contig50307:1734..2126+ (Himanthalia elongata Himel1 dioecious)back to top |