mRNA_H-elongata_contig50307.12262.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig50307.12262.1
Unique NamemRNA_H-elongata_contig50307.12262.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig50307.12262.1 vs. uniprot
Match: D7G5T1_ECTSI (Oxidoreductase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5T1_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 8.130e-19
Identity = 47/74 (63.51%), Postives = 57/74 (77.03%), Query Frame = -1
Query:   13 SEGRTPVASTDAPPSKLVVDVVVIGSGAGGGCAAGVLASKGLKVAVLEKGGLYDQNDFAAFSEMEAYRRLYERQ 234
            S    P +  +  P +L VDVVV+GSGAGGGCAAG LA++GL+VAVLEKGGLY  +DFA FSEMEAY+ +YE Q
Sbjct:  382 SASAAPTSPHETLPQQLTVDVVVVGSGAGGGCAAGALAARGLRVAVLEKGGLYGAHDFARFSEMEAYKDMYEGQ 455          
BLAST of mRNA_H-elongata_contig50307.12262.1 vs. uniprot
Match: A0A6H5JQQ5_9PHAE (4Fe-4S ferredoxin-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQQ5_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 2.010e-18
Identity = 46/69 (66.67%), Postives = 55/69 (79.71%), Query Frame = -1
Query:   13 PVASTDAPPSKLVVDVVVIGSGAGGGCAAGVLASKGLKVAVLEKGGLYDQNDFAAFSEMEAYRRLYERQ 219
            P+   +  P +L VDVVV+GSGAGGGCAAG LA++GL+VAVLEKGGLY   DFA FSEMEAY+ +YE Q
Sbjct:  479 PIPPHEPLPQQLTVDVVVVGSGAGGGCAAGALAARGLRVAVLEKGGLYGAPDFAGFSEMEAYKDMYEGQ 547          
BLAST of mRNA_H-elongata_contig50307.12262.1 vs. uniprot
Match: W7T4J7_9STRA (Long-chain-alcohol oxidase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T4J7_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 1.500e-11
Identity = 36/58 (62.07%), Postives = 44/58 (75.86%), Query Frame = -1
Query:   16 KLVVDVVVIGSGAGGGCAAGVLASKGLKVAVLEKGGLYDQNDFAAFSEMEAYRRLYER 189
            +L  DVV++GSGAGGG AAGVL + GLKV VLEKGG Y + DFA F E+++ R L ER
Sbjct:  275 ELSCDVVIVGSGAGGGTAAGVLTAAGLKVVVLEKGGYYSEEDFAGFGELDSERALCER 332          
BLAST of mRNA_H-elongata_contig50307.12262.1 vs. uniprot
Match: UPI000D65957B (FAD-dependent oxidoreductase n=1 Tax=Microbacterium TaxID=33882 RepID=UPI000D65957B)

HSP 1 Score: 66.2 bits (160), Expect = 4.400e-10
Identity = 44/80 (55.00%), Postives = 51/80 (63.75%), Query Frame = -1
Query:   22 GSVGPRESEGRTPVASTDAPPSKLVVD--VVVIGSGAGGGCAAGVLASKGLKVAVLEKGGLYDQNDFAAFSEMEAYRRLY 255
            G  GPR+ +  TP      P S+L +D  VVV+GSGAGGG AA VLAS+GL V VLEKGG YD  DF   SE+    RLY
Sbjct:  135 GPPGPRQ-DASTPPLHPQTPESELSLDCDVVVVGSGAGGGTAAAVLASEGLDVVVLEKGGYYDDRDFDG-SELGGLARLY 212          
BLAST of mRNA_H-elongata_contig50307.12262.1 vs. uniprot
Match: A0A0P7BZS5_9ACTN (Long-chain-alcohol oxidase n=4 Tax=Frankia TaxID=1854 RepID=A0A0P7BZS5_9ACTN)

HSP 1 Score: 65.9 bits (159), Expect = 6.000e-10
Identity = 41/79 (51.90%), Postives = 49/79 (62.03%), Query Frame = -1
Query:   22 GSVGPRESEGRTPVAS-TDAPPSKLVVDVVVIGSGAGGGCAAGVLASKGLKVAVLEKGGLYDQNDFAAFSEMEAYRRLY 255
            G +GPR+   R P+A  T    + L  DVVV+GSGAGGG AAGVLA  GL V VLE+GG YD  DF    E+    R+Y
Sbjct:  135 GPLGPRDGAPRPPLAPLTPTADTTLDCDVVVVGSGAGGGTAAGVLAGAGLDVVVLERGGYYDDADFDG-GELSGLSRMY 212          
BLAST of mRNA_H-elongata_contig50307.12262.1 vs. uniprot
Match: UPI0003769182 (GMC family oxidoreductase N-terminal domain-containing protein n=1 Tax=Frankia discariae TaxID=365528 RepID=UPI0003769182)

HSP 1 Score: 64.7 bits (156), Expect = 1.520e-9
Identity = 44/82 (53.66%), Postives = 48/82 (58.54%), Query Frame = -1
Query:   16 GSVGPRESEGRTPVASTDAPPSKLVVD--VVVIGSGAGGGCAAGVLASKGLKVAVLEKGGLYDQNDFAAFSEMEAYRRLYER 255
            G  GPR    R P+A  D P S    D  VVV+GSGAGGG AAGVLA  GL V VLE+GG YD  DF    E+    RLY R
Sbjct:  136 GPPGPRADASRPPLAPLD-PTSGTTFDCDVVVVGSGAGGGTAAGVLAGAGLDVVVLERGGYYDDADFDG-GELSGLSRLYAR 215          
BLAST of mRNA_H-elongata_contig50307.12262.1 vs. uniprot
Match: UPI001CD26ACE (GMC family oxidoreductase N-terminal domain-containing protein n=1 Tax=Nocardia sp. alder85J TaxID=2862949 RepID=UPI001CD26ACE)

HSP 1 Score: 64.3 bits (155), Expect = 2.070e-9
Identity = 38/60 (63.33%), Postives = 41/60 (68.33%), Query Frame = -1
Query:   22 APPSKLVVDVVVIGSGAGGGCAAGVLASKGLKVAVLEKGGLYDQNDFAAFSEMEAYRRLY 201
            A P+ L  DVVVIGSGAGGG AA VLA  GL V VLE+G  YD  DF A  E +A RRLY
Sbjct:  154 ATPATLSCDVVVIGSGAGGGTAAAVLAGAGLDVIVLERGNYYDDRDFGA-GEFDALRRLY 212          
BLAST of mRNA_H-elongata_contig50307.12262.1 vs. uniprot
Match: A0A1S1Q8A9_9ACTN (Long-chain-alcohol oxidase n=2 Tax=Frankia sp. Cc1.17 TaxID=573497 RepID=A0A1S1Q8A9_9ACTN)

HSP 1 Score: 63.2 bits (152), Expect = 5.260e-9
Identity = 39/67 (58.21%), Postives = 43/67 (64.18%), Query Frame = -1
Query:   22 TPVASTDAPPSKLVVDVVVIGSGAGGGCAAGVLASKGLKVAVLEKGGLYDQNDFAAFSEMEAYRRLY 222
            TP+A T      L  DVVV+GSGAGGG AAGVLA  GL V VLE+GG YD  DF    E+   RRLY
Sbjct:  166 TPIADTT-----LDCDVVVVGSGAGGGTAAGVLAGAGLDVVVLERGGYYDDADFDG-GELSGLRRLY 226          
BLAST of mRNA_H-elongata_contig50307.12262.1 vs. uniprot
Match: UPI000407C23A (GMC family oxidoreductase n=2 Tax=Solimonas TaxID=413435 RepID=UPI000407C23A)

HSP 1 Score: 62.8 bits (151), Expect = 6.960e-9
Identity = 33/65 (50.77%), Postives = 43/65 (66.15%), Query Frame = -1
Query:   19 ASTDAPPSKLVVDVVVIGSGAGGGCAAGVLASKGLKVAVLEKGGLYDQNDFAAFSEMEAYRRLYE 213
            AST      L  DVV++GSGAGGG AA +L++ GL V +LE+GGLY   DF A  E  +Y +LY+
Sbjct:   20 ASTLTNDETLEADVVIVGSGAGGGTAAEILSAAGLSVLMLEEGGLYTSRDFKALDEFSSYSKLYQ 84          
BLAST of mRNA_H-elongata_contig50307.12262.1 vs. uniprot
Match: A0A7R9YDU7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YDU7_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 1.320e-8
Identity = 31/60 (51.67%), Postives = 43/60 (71.67%), Query Frame = -1
Query:   19 PPSKLVVDVVVIGSGAGGGCAAGVLASKGLKVAVLEKGGLYDQNDFAAFSEMEAYRRLYE 198
            PP+    DVV++GSGAGGG AA VL  KG +VAV+EKG  + + +FA +SEM+A+   +E
Sbjct:  194 PPAPKPYDVVIVGSGAGGGVAASVLTQKGFRVAVVEKGQHFGETNFAQWSEMQAFENAFE 253          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50307.12262.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5T1_ECTSI8.130e-1963.51Oxidoreductase n=1 Tax=Ectocarpus siliculosus TaxI... [more]
A0A6H5JQQ5_9PHAE2.010e-1866.674Fe-4S ferredoxin-type domain-containing protein n... [more]
W7T4J7_9STRA1.500e-1162.07Long-chain-alcohol oxidase n=2 Tax=Monodopsidaceae... [more]
UPI000D65957B4.400e-1055.00FAD-dependent oxidoreductase n=1 Tax=Microbacteriu... [more]
A0A0P7BZS5_9ACTN6.000e-1051.90Long-chain-alcohol oxidase n=4 Tax=Frankia TaxID=1... [more]
UPI00037691821.520e-953.66GMC family oxidoreductase N-terminal domain-contai... [more]
UPI001CD26ACE2.070e-963.33GMC family oxidoreductase N-terminal domain-contai... [more]
A0A1S1Q8A9_9ACTN5.260e-958.21Long-chain-alcohol oxidase n=2 Tax=Frankia sp. Cc1... [more]
UPI000407C23A6.960e-950.77GMC family oxidoreductase n=2 Tax=Solimonas TaxID=... [more]
A0A7R9YDU7_9STRA1.320e-851.67Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig50307contigH-elongata_contig50307:1734..2126 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size393
Cds size321
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930827.3618672-CDS-H-elongata_contig50307:1733..20541622930827.3618672-CDS-H-elongata_contig50307:1733..2054Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50307 1734..2054 +
1691679587.5519834-CDS-H-elongata_contig50307:1733..20541691679587.5519834-CDS-H-elongata_contig50307:1733..2054Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50307 1734..2054 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930827.3759599-UTR-H-elongata_contig50307:2054..21261622930827.3759599-UTR-H-elongata_contig50307:2054..2126Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig50307 2055..2126 +
1691679587.5620277-UTR-H-elongata_contig50307:2054..21261691679587.5620277-UTR-H-elongata_contig50307:2054..2126Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig50307 2055..2126 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig50307.12262.1prot_H-elongata_contig50307.12262.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig50307 1734..2054 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig50307.12262.1

>prot_H-elongata_contig50307.12262.1 ID=prot_H-elongata_contig50307.12262.1|Name=mRNA_H-elongata_contig50307.12262.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=107bp
MVVYLALVQPTIRLHLRERSEIILIVEASFFQYRHLQALRCEDPCGAPAT
CPRANDYNVHDKLRWRRIGRRNRRPTFAFSRTYATVTDDDAFGVTIVETF
GKRRNP*
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mRNA from alignment at H-elongata_contig50307:1734..2126+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig50307.12262.1 ID=mRNA_H-elongata_contig50307.12262.1|Name=mRNA_H-elongata_contig50307.12262.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=393bp|location=Sequence derived from alignment at H-elongata_contig50307:1734..2126+ (Himanthalia elongata Himel1 dioecious)
ATGGTCGTCTACCTGGCGCTCGTACAACCGACGATACGCCTCCATCTCCG AGAACGCAGCGAAATCATTCTGATCGTAGAGGCCTCCTTTTTCCAGTACC GCCACCTTCAAGCCCTTCGATGCGAGGACCCCTGCGGCGCACCCGCCACC TGCCCCAGAGCCAATGACTACAACGTCCACGACAAGCTTAGATGGCGGCG CATCGGTCGACGCAACAGGCGTCCGACCTTCGCTTTCTCGCGGACCTACG CTACCGTTACCGACGACGACGCCTTCGGCGTGACCATCGTCGAAACCTTT GGCAAGCGACGAAACCCTTGATGCGGAGGGTCCAGCGGCTGATGCACATG TGGGTGAGGAATCAGCAGGACAGTTCGGCTCGCGGGAAGACGG
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Coding sequence (CDS) from alignment at H-elongata_contig50307:1734..2126+

>mRNA_H-elongata_contig50307.12262.1 ID=mRNA_H-elongata_contig50307.12262.1|Name=mRNA_H-elongata_contig50307.12262.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=642bp|location=Sequence derived from alignment at H-elongata_contig50307:1734..2126+ (Himanthalia elongata Himel1 dioecious)
ATGGTCGTCTACCTGGCGCTCGTACAACCGACGATACGCCTCCATCTCCG
AGAACGCAGCGAAATCATTCTGATCGTAGAGGCCTCCTTTTTCCAGTACC
GCCACCTTCAAGCCCTTCGATGCGAGGACCCCTGCGGCGCACCCGCCACC
TGCCCCAGAGCCAATGACTACAACGTCCACGACAAGCTTAGATGGCGGCG
CATCGGTCGACGCAACAGGCGTCCGACCTTCGCTTTCTCGCGGACCTACG
CTACCGTTACCGACGACGACGCCTTCGGCGTGACCATCGTCGAAACCTTT
GGCAAGCGACGAAACCCTTGAATGGTCGTCTACCTGGCGCTCGTACAACC
GACGATACGCCTCCATCTCCGAGAACGCAGCGAAATCATTCTGATCGTAG
AGGCCTCCTTTTTCCAGTACCGCCACCTTCAAGCCCTTCGATGCGAGGAC
CCCTGCGGCGCACCCGCCACCTGCCCCAGAGCCAATGACTACAACGTCCA
CGACAAGCTTAGATGGCGGCGCATCGGTCGACGCAACAGGCGTCCGACCT
TCGCTTTCTCGCGGACCTACGCTACCGTTACCGACGACGACGCCTTCGGC
GTGACCATCGTCGAAACCTTTGGCAAGCGACGAAACCCTTGA
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