mRNA_H-elongata_contig50276.12257.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig50276.12257.1
Unique NamemRNA_H-elongata_contig50276.12257.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50276.12257.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig50276contigH-elongata_contig50276:1560..2350 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size614
Cds size342
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig50276.12257.1prot_H-elongata_contig50276.12257.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig50276 1590..2108 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930826.6693149-UTR-H-elongata_contig50276:1559..15891622930826.6693149-UTR-H-elongata_contig50276:1559..1589Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig50276 1560..1589 -
1691679587.2070491-UTR-H-elongata_contig50276:1559..15891691679587.2070491-UTR-H-elongata_contig50276:1559..1589Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig50276 1560..1589 -
1622930826.7123148-UTR-H-elongata_contig50276:2108..23501622930826.7123148-UTR-H-elongata_contig50276:2108..2350Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig50276 2109..2350 -
1691679587.242826-UTR-H-elongata_contig50276:2108..23501691679587.242826-UTR-H-elongata_contig50276:2108..2350Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig50276 2109..2350 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930826.6832771-CDS-H-elongata_contig50276:1589..19141622930826.6832771-CDS-H-elongata_contig50276:1589..1914Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50276 1590..1914 -
1691679587.224888-CDS-H-elongata_contig50276:1589..19141691679587.224888-CDS-H-elongata_contig50276:1589..1914Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50276 1590..1914 -
1622930826.6993623-CDS-H-elongata_contig50276:2091..21081622930826.6993623-CDS-H-elongata_contig50276:2091..2108Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50276 2092..2108 -
1691679587.2341225-CDS-H-elongata_contig50276:2091..21081691679587.2341225-CDS-H-elongata_contig50276:2091..2108Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50276 2092..2108 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig50276.12257.1

>prot_H-elongata_contig50276.12257.1 ID=prot_H-elongata_contig50276.12257.1|Name=mRNA_H-elongata_contig50276.12257.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=114bp
MPARTRHGSSGQPISSDEQRTRSRVIAAVGAEAAKVSAAAAAVVVAEEVV
EGDIFVAATVVTGAVEEGVEGSLAPPLPTEGEEPIAPAAAARPMEVTMRY
IGAGAGAVAVTTM*
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mRNA from alignment at H-elongata_contig50276:1560..2350-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig50276.12257.1 ID=mRNA_H-elongata_contig50276.12257.1|Name=mRNA_H-elongata_contig50276.12257.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=791bp|location=Sequence derived from alignment at H-elongata_contig50276:1560..2350- (Himanthalia elongata Himel1 dioecious)
AATCGCTCCGTATGGACATCACGACGAAATCGGGAGCCTTCCTCTGCCAC
GATGACCACACGAAGGGCCTTCTCGTCCACATCACGGTTGCCAACCCCAT
GGGCACCTGACATCTGGTCAGCTCCGTCCGACGGGCGGCAACGCCCTCCG
CTTGGCGAAGAATCGCAAGATTCACACGTGTCGAGGATCGTTTGATCCCG
CTACCTACATCCTTCAGACTCTTGCATTTTCCAGCTGCGGTGATGCCGGC
GAGGACACGGTCAAATTCTACCAGACGGTCGCGACCCACCGGGTGTTCAA
TCGAGGGTAAATGGAGGGTCAGCAGCGGCACGGGGACAAGAGGTGACAAA
ACTTCGGCGACACTCGTCCTTTGTCCTGAACCGTGCGCTTTCTGCGACGA
CCAGCGAGGCTATAGCCCAAGCCGTCGGTCGACCAGCCATGGCTCCAGCG
GACAGCCTATATCTAGCGATGAGCAAAGGACGAGATCTCGCGTCATCGCA
GCGGTAGGGGCGGAGGCGGCGAAGGTATCCGCAGCGGCTGCGGCGGTGGT
GGTGGCGGAGGAGGTAGTCGAAGGGGACATCTTCGTGGCGGCTACCGTGG
TGACGGGGGCGGTAGAGGAGGGAGTTGAAGGGAGCCTCGCGCCACCGTTA
CCAACCGAAGGCGAGGAACCGATCGCACCGGCAGCAGCCGCACGACCAAT
GGAAGTGACGATGAGGTATATAGGGGCTGGCGCGGGCGCGGTTGCAGTGA
CCACGATGTAGAAGCTGGCGGCCGCTGTCGCGATAGTACAG
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Coding sequence (CDS) from alignment at H-elongata_contig50276:1560..2350-

>mRNA_H-elongata_contig50276.12257.1 ID=mRNA_H-elongata_contig50276.12257.1|Name=mRNA_H-elongata_contig50276.12257.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=684bp|location=Sequence derived from alignment at H-elongata_contig50276:1560..2350- (Himanthalia elongata Himel1 dioecious)
ATGCCGGCGAGGACACGATGCCGGCGAGGACACGCCATGGCTCCAGCGGA
CAGCCTATATCTAGCGATGAGCAAAGGACGAGATCTCGCGTCATCGCAGC
GGTAGGGGCGGAGGCGGCGAAGGTATCCGCAGCGGCTGCGGCGGTGGTGG
TGGCGGAGGAGGTAGTCGAAGGGGACATCTTCGTGGCGGCTACCGTGGTG
ACGGGGGCGGTAGAGGAGGGAGTTGAAGGGAGCCTCGCGCCACCGTTACC
AACCGAAGGCGAGGAACCGATCGCACCGGCAGCAGCCGCACGACCAATGG
AAGTGACGATGAGGTATATAGGGGCTGGCGCGGGCGCGGTTGCAGTGACC
ACGATGTAGCCATGGCTCCAGCGGACAGCCTATATCTAGCGATGAGCAAA
GGACGAGATCTCGCGTCATCGCAGCGGTAGGGGCGGAGGCGGCGAAGGTA
TCCGCAGCGGCTGCGGCGGTGGTGGTGGCGGAGGAGGTAGTCGAAGGGGA
CATCTTCGTGGCGGCTACCGTGGTGACGGGGGCGGTAGAGGAGGGAGTTG
AAGGGAGCCTCGCGCCACCGTTACCAACCGAAGGCGAGGAACCGATCGCA
CCGGCAGCAGCCGCACGACCAATGGAAGTGACGATGAGGTATATAGGGGC
TGGCGCGGGCGCGGTTGCAGTGACCACGATGTAG
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