mRNA_H-elongata_contig50261.12255.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig50261.12255.1 vs. uniprot
Match: A0A6H5KA14_9PHAE (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA14_9PHAE) HSP 1 Score: 70.1 bits (170), Expect = 1.300e-12 Identity = 34/59 (57.63%), Postives = 43/59 (72.88%), Query Frame = 1
Query: 1 QLKSEVLRYRVIPKLDPKEDPLEWWKTTGATFIFLRVLAIRVLCIQASSASSERLFSTA 177
Q+KSEVLRYR + ++P +PL WW ATF LR L+ R+LC+ ASSA+SERLFS A
Sbjct: 482 QMKSEVLRYRGVTSMNPDGNPLTWWDQHKATFPLLRELSHRILCVPASSAASERLFSKA 540
BLAST of mRNA_H-elongata_contig50261.12255.1 vs. uniprot
Match: UPI000DC13D07 (zinc finger BED domain-containing protein 1-like n=1 Tax=Melanaphis sacchari TaxID=742174 RepID=UPI000DC13D07) HSP 1 Score: 63.2 bits (152), Expect = 3.600e-10 Identity = 31/56 (55.36%), Postives = 38/56 (67.86%), Query Frame = 1
Query: 10 SEVLRYRVIPKLDPKEDPLEWWKTTGATFIFLRVLAIRVLCIQASSASSERLFSTA 177
E RY P+++ +DP WWK+ TF FL VLA +LCI ASSASSER+FSTA
Sbjct: 506 DEFSRYLAEPQINHNDDPCLWWKSRELTFPFLSVLAKNILCIPASSASSERVFSTA 561
BLAST of mRNA_H-elongata_contig50261.12255.1 vs. uniprot
Match: J9KU67_ACYPI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=J9KU67_ACYPI) HSP 1 Score: 61.6 bits (148), Expect = 1.190e-9 Identity = 30/56 (53.57%), Postives = 37/56 (66.07%), Query Frame = 1
Query: 10 SEVLRYRVIPKLDPKEDPLEWWKTTGATFIFLRVLAIRVLCIQASSASSERLFSTA 177
E RY P+++ +DP WWK+ TF FL V A +LCI ASSASSER+FSTA
Sbjct: 221 DEFSRYLAEPQINHNDDPCLWWKSRELTFPFLSVFAKNILCIPASSASSERVFSTA 276
BLAST of mRNA_H-elongata_contig50261.12255.1 vs. uniprot
Match: UPI0007636C86 (zinc finger BED domain-containing protein 1-like n=1 Tax=Diuraphis noxia TaxID=143948 RepID=UPI0007636C86) HSP 1 Score: 60.1 bits (144), Expect = 3.100e-9 Identity = 30/56 (53.57%), Postives = 37/56 (66.07%), Query Frame = 1
Query: 10 SEVLRYRVIPKLDPKEDPLEWWKTTGATFIFLRVLAIRVLCIQASSASSERLFSTA 177
E RY P+++ +DP WWK+ TF L VLA +LCI ASSASSER+FSTA
Sbjct: 194 DEFSRYLAEPQINHNDDPCLWWKSRELTFPSLSVLAKNILCIPASSASSERVFSTA 249
BLAST of mRNA_H-elongata_contig50261.12255.1 vs. uniprot
Match: A0A2H8TDZ4_9HEMI (Zinc finger BED domain-containing protein 1 n=2 Tax=Aphidini TaxID=33387 RepID=A0A2H8TDZ4_9HEMI) HSP 1 Score: 60.5 bits (145), Expect = 3.220e-9 Identity = 25/59 (42.37%), Postives = 44/59 (74.58%), Query Frame = 1
Query: 1 QLKSEVLRYRVIPKLDPKEDPLEWWKTTGATFIFLRVLAIRVLCIQASSASSERLFSTA 177
++++E+ Y +PK+D ++ P+ WW +G F FL+V+A +++CIQA+S +SER+FS A
Sbjct: 574 KVENEINGYLNLPKIDFEQSPVTWWHLSGTMFPFLKVMANKLMCIQATSVASERVFSRA 632
BLAST of mRNA_H-elongata_contig50261.12255.1 vs. uniprot
Match: A0A1A8AZ70_NOTFU (Dimer_Tnp_hAT domain-containing protein (Fragment) n=1 Tax=Nothobranchius furzeri TaxID=105023 RepID=A0A1A8AZ70_NOTFU) HSP 1 Score: 56.2 bits (134), Expect = 1.930e-8 Identity = 28/54 (51.85%), Postives = 36/54 (66.67%), Query Frame = 1
Query: 13 EVLRYRVIPKLDPKEDPLEWWKTTGATFIFLRVLAIRVLCIQASSASSERLFST 174
E+ Y LD +EDPLEWWK + F L VLA + LC+ A+SASSE++FST
Sbjct: 59 ELQAYLQAATLDTEEDPLEWWKQSPKLFPKLSVLAKKYLCVPATSASSEQVFST 112
BLAST of mRNA_H-elongata_contig50261.12255.1 vs. uniprot
Match: UPI0018E2124D (E3 SUMO-protein ligase ZBED1-like n=3 Tax=Acanthomorphata TaxID=123368 RepID=UPI0018E2124D) HSP 1 Score: 57.4 bits (137), Expect = 3.910e-8 Identity = 26/56 (46.43%), Postives = 37/56 (66.07%), Query Frame = 1
Query: 4 LKSEVLRYRVIPKLDPKEDPLEWWKTTGATFIFLRVLAIRVLCIQASSASSERLFS 171
+K+E+ Y + P +D ++DPL WW+ F +L LA + LCI A+SA SERLFS
Sbjct: 413 IKAELDNYLITPSIDGEQDPLAWWRVHNVNFPWLSRLARKYLCIPATSAPSERLFS 468
BLAST of mRNA_H-elongata_contig50261.12255.1 vs. uniprot
Match: UPI00046BD743 (zinc finger BED domain-containing protein 1-like n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=UPI00046BD743) HSP 1 Score: 57.4 bits (137), Expect = 3.910e-8 Identity = 24/59 (40.68%), Postives = 42/59 (71.19%), Query Frame = 1
Query: 1 QLKSEVLRYRVIPKLDPKEDPLEWWKTTGATFIFLRVLAIRVLCIQASSASSERLFSTA 177
++++E+ Y +PK+D + P+ WW G F FL+V+A +++C+QA+S +SER+FS A
Sbjct: 428 KVENEINGYFNLPKIDYELSPITWWHLNGTMFPFLKVMANKLMCMQATSVASERVFSRA 486
BLAST of mRNA_H-elongata_contig50261.12255.1 vs. uniprot
Match: UPI0018E24B7F (E3 SUMO-protein ligase ZBED1-like n=1 Tax=Cyprinodon tularosa TaxID=77115 RepID=UPI0018E24B7F) HSP 1 Score: 57.4 bits (137), Expect = 3.930e-8 Identity = 26/56 (46.43%), Postives = 37/56 (66.07%), Query Frame = 1
Query: 4 LKSEVLRYRVIPKLDPKEDPLEWWKTTGATFIFLRVLAIRVLCIQASSASSERLFS 171
+K+E+ Y + P +D ++DPL WW+ F +L LA + LCI A+SA SERLFS
Sbjct: 538 IKAELDNYLITPSIDGEQDPLAWWRVHNVNFPWLSRLARKYLCIPATSAPSERLFS 593
BLAST of mRNA_H-elongata_contig50261.12255.1 vs. uniprot
Match: J9KDH9_ACYPI (BED-type domain-containing protein n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=J9KDH9_ACYPI) HSP 1 Score: 57.4 bits (137), Expect = 3.950e-8 Identity = 24/59 (40.68%), Postives = 42/59 (71.19%), Query Frame = 1
Query: 1 QLKSEVLRYRVIPKLDPKEDPLEWWKTTGATFIFLRVLAIRVLCIQASSASSERLFSTA 177
++++E+ Y +PK+D + P+ WW G F FL+V+A +++C+QA+S +SER+FS A
Sbjct: 428 KVENEINGYFNLPKIDYELSPITWWHLNGTMFPFLKVMANKLMCMQATSVASERVFSRA 486 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50261.12255.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig50261.12255.1 >prot_H-elongata_contig50261.12255.1 ID=prot_H-elongata_contig50261.12255.1|Name=mRNA_H-elongata_contig50261.12255.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=59bp QLKSEVLRYRVIPKLDPKEDPLEWWKTTGATFIFLRVLAIRVLCIQASSAback to top mRNA from alignment at H-elongata_contig50261:452..628- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig50261.12255.1 ID=mRNA_H-elongata_contig50261.12255.1|Name=mRNA_H-elongata_contig50261.12255.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=177bp|location=Sequence derived from alignment at H-elongata_contig50261:452..628- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig50261:452..628- >mRNA_H-elongata_contig50261.12255.1 ID=mRNA_H-elongata_contig50261.12255.1|Name=mRNA_H-elongata_contig50261.12255.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=354bp|location=Sequence derived from alignment at H-elongata_contig50261:452..628- (Himanthalia elongata Himel1 dioecious)back to top |