mRNA_H-elongata_contig50245.12253.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig50245.12253.1
Unique NamemRNA_H-elongata_contig50245.12253.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig50245.12253.1 vs. uniprot
Match: D7FWJ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWJ7_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 5.410e-19
Identity = 38/57 (66.67%), Postives = 49/57 (85.96%), Query Frame = 1 
Query:   10 EEEPSYESATRDVLLTSAKLIGSSCVDVNLAFSKCKAQDSAPEACLKLGGEVLSCTN 180
            EE+  + SATRDVL+++AKL+GSSCVD NLAF+KCKA++S PEAC+KLG  VL CT+
Sbjct:    3 EEDMPFPSATRDVLISTAKLLGSSCVDENLAFTKCKAENSDPEACMKLGVAVLECTS 59
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50245.12253.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FWJ7_ECTSI5.410e-1966.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig50245contigH-elongata_contig50245:1261..1810 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-25_003330.1
Exons2
Model size189
Cds size189
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930826.3285697-CDS-H-elongata_contig50245:1260..13331622930826.3285697-CDS-H-elongata_contig50245:1260..1333Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50245 1261..1333 +
1691679587.0847304-CDS-H-elongata_contig50245:1260..13331691679587.0847304-CDS-H-elongata_contig50245:1260..1333Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50245 1261..1333 +
1622930826.34825-CDS-H-elongata_contig50245:1694..18101622930826.34825-CDS-H-elongata_contig50245:1694..1810Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50245 1695..1810 +
1691679587.0989976-CDS-H-elongata_contig50245:1694..18101691679587.0989976-CDS-H-elongata_contig50245:1694..1810Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50245 1695..1810 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig50245.12253.1prot_H-elongata_contig50245.12253.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig50245 1261..1810 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig50245.12253.1

>prot_H-elongata_contig50245.12253.1 ID=prot_H-elongata_contig50245.12253.1|Name=mRNA_H-elongata_contig50245.12253.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=63bp
MAVEEEPSYESATRDVLLTSAKLIGSSCVDVNLAFSKCKAQDSAPEACLK
LGGEVLSCTNAV*
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mRNA from alignment at H-elongata_contig50245:1261..1810+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig50245.12253.1 ID=mRNA_H-elongata_contig50245.12253.1|Name=mRNA_H-elongata_contig50245.12253.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=550bp|location=Sequence derived from alignment at H-elongata_contig50245:1261..1810+ (Himanthalia elongata Himel1 dioecious)
ATGGCCGTCGAAGAGGAGCCAAGCTACGAGTCGGCCACGCGAGACGTTCT
TCTCACGTCGGCGAAGTTGATAGGTGGGTCAGTGGGTCAGCAGGTCAGCA
GCGCCGAACGAGGTCCGCTGAAGTATTAAACGAGGGTTAGGGTCGTTGTT
CAACGGACTCGCGCGTTAGCAGGTTTCGTGAGCAAAGCATGGGATATTCC
GCCGTTAACATGTACAGTATAGTATATGGTTGATTGGTTTTGCAGCGTTT
TGCTTCAGGCCTAGCAATCGGCAACGCGTCGATGATGGCTTCCGTTCGAC
TTGGGGGGGAGGGGGGCATGTCTCATGGATAGGCATGCAATTCCTTGATG
TAAGGGCAACTGGGTGTATCCTCCTGCATCGCTCACCCTCTATCGCTCGC
TCTTCGCCCTTCATCTTCGTGGTACGGCACACAGGTTCGAGTTGCGTCGA
CGTGAATCTGGCGTTTTCCAAGTGCAAGGCTCAAGACTCGGCGCCGGAGG
CATGTCTAAAACTGGGGGGGGAAGTGCTATCGTGTACGAACGCCGTGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig50245:1261..1810+

>mRNA_H-elongata_contig50245.12253.1 ID=mRNA_H-elongata_contig50245.12253.1|Name=mRNA_H-elongata_contig50245.12253.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=378bp|location=Sequence derived from alignment at H-elongata_contig50245:1261..1810+ (Himanthalia elongata Himel1 dioecious)
ATGGCCGTCGAAGAGGAGCCAAGCTACGAGTCGGCCACGCGAGACGTTCT
TCTCACGTCGGCGAAGTTGATAGATGGCCGTCGAAGAGGAGCCAAGCTAC
GAGTCGGCCACGCGAGACGTTCTTCTCACGTCGGCGAAGTTGATAGGTTC
GAGTTGCGTCGACGTGAATCTGGCGTTTTCCAAGTGCAAGGCTCAAGACT
CGGCGCCGGAGGCATGTCTAAAACTGGGGGGGGAAGTGCTATCGTGTACG
AACGCCGTGTGAGTTCGAGTTGCGTCGACGTGAATCTGGCGTTTTCCAAG
TGCAAGGCTCAAGACTCGGCGCCGGAGGCATGTCTAAAACTGGGGGGGGA
AGTGCTATCGTGTACGAACGCCGTGTGA
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