mRNA_H-elongata_contig50201.12245.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig50201.12245.1
Unique NamemRNA_H-elongata_contig50201.12245.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig50201.12245.1 vs. uniprot
Match: D8LIJ0_ECTSI (MutL protein homolog 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIJ0_ECTSI)

HSP 1 Score: 142 bits (357), Expect = 2.000e-37
Identity = 70/83 (84.34%), Postives = 75/83 (90.36%), Query Frame = 3
Query:    6 ETGLSTLAFRAKGLISGANYSAKRSDFILFINDRLVESASIKKAVEAAYKDVLPKSTHPFVYLGITMPSRHLDVNVHPTKREV 254
            E   S  AF+AKGL+SGA+YSAKRSDFILFINDRLVES SIKK VE+AYKDVLPK+THPFVYLGITMPS HLDVNVHPTKREV
Sbjct:  260 EVAPSKFAFKAKGLVSGADYSAKRSDFILFINDRLVESPSIKKTVESAYKDVLPKNTHPFVYLGITMPSHHLDVNVHPTKREV 342          
BLAST of mRNA_H-elongata_contig50201.12245.1 vs. uniprot
Match: A0A7S2RJJ5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RJJ5_9STRA)

HSP 1 Score: 111 bits (278), Expect = 9.130e-27
Identity = 52/76 (68.42%), Postives = 61/76 (80.26%), Query Frame = 3
Query:   27 AFRAKGLISGANYSAKRSDFILFINDRLVESASIKKAVEAAYKDVLPKSTHPFVYLGITMPSRHLDVNVHPTKREV 254
            AFR KG +S  NYSAKR  FILFIN RLVES +IKK+VE+ YKD+LP  +HPFVYL + +P RH+DVNV PTKREV
Sbjct:  271 AFRVKGYVSNGNYSAKRPAFILFINHRLVESPAIKKSVESVYKDILPSGSHPFVYLSLELPGRHVDVNVSPTKREV 346          
BLAST of mRNA_H-elongata_contig50201.12245.1 vs. uniprot
Match: A0A836CHJ0_9STRA (DNA_mis_repair domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHJ0_9STRA)

HSP 1 Score: 107 bits (266), Expect = 3.830e-25
Identity = 48/75 (64.00%), Postives = 61/75 (81.33%), Query Frame = 3
Query:   30 FRAKGLISGANYSAKRSDFILFINDRLVESASIKKAVEAAYKDVLPKSTHPFVYLGITMPSRHLDVNVHPTKREV 254
            FRA+G +S ANYS KR+ FILFIN RLV+S SI++ +E+ Y  VLPK TH F+YL ++MP+ HLDVNVHPTK+EV
Sbjct:  274 FRARGFVSNANYSTKRAVFILFINHRLVDSTSIRRTLESVYSSVLPKGTHAFIYLALSMPAPHLDVNVHPTKQEV 348          
BLAST of mRNA_H-elongata_contig50201.12245.1 vs. uniprot
Match: A0A0K1P0S1_9MAGN (MutL-like protein 1 (Fragment) n=1 Tax=Schisandra propinqua TaxID=124790 RepID=A0A0K1P0S1_9MAGN)

HSP 1 Score: 102 bits (255), Expect = 2.550e-24
Identity = 44/75 (58.67%), Postives = 59/75 (78.67%), Query Frame = 3
Query:   30 FRAKGLISGANYSAKRSDFILFINDRLVESASIKKAVEAAYKDVLPKSTHPFVYLGITMPSRHLDVNVHPTKREV 254
            F+  G IS ANYSAK++  +LFINDRLVE +++K+A+E  Y   LPK+  PF+Y+ IT+PS H+DVN+HPTKREV
Sbjct:   38 FKMDGFISNANYSAKKTTMVLFINDRLVECSALKRAIEVVYASTLPKAAKPFIYMSITLPSDHVDVNIHPTKREV 112          
BLAST of mRNA_H-elongata_contig50201.12245.1 vs. uniprot
Match: A8W2K5_HUMAN (MutL-like 1 protein (Fragment) n=1 Tax=Homo sapiens TaxID=9606 RepID=A8W2K5_HUMAN)

HSP 1 Score: 96.7 bits (239), Expect = 6.280e-24
Identity = 45/78 (57.69%), Postives = 58/78 (74.36%), Query Frame = 3
Query:   21 TLAFRAKGLISGANYSAKRSDFILFINDRLVESASIKKAVEAAYKDVLPKSTHPFVYLGITMPSRHLDVNVHPTKREV 254
            TLAF+  G IS ANYS K+   +LFIN RLVES S++KA+E  Y   LPK+THPF+YL + +  +++DVNVHPTK EV
Sbjct:   17 TLAFKMNGYISNANYSVKKCILLLFINHRLVESTSLRKAIETVYAAYLPKNTHPFLYLSLEISPQNVDVNVHPTKHEV 94          
BLAST of mRNA_H-elongata_contig50201.12245.1 vs. uniprot
Match: A0A097PJR4_GINBI (MLH1 (Fragment) n=1 Tax=Ginkgo biloba TaxID=3311 RepID=A0A097PJR4_GINBI)

HSP 1 Score: 103 bits (256), Expect = 8.210e-24
Identity = 44/75 (58.67%), Postives = 60/75 (80.00%), Query Frame = 3
Query:   30 FRAKGLISGANYSAKRSDFILFINDRLVESASIKKAVEAAYKDVLPKSTHPFVYLGITMPSRHLDVNVHPTKREV 254
            F+ +G IS ANYSAK++  +LFINDRLVE  S+K+A+E  Y  +LPK++ PF+Y+ I++P  H+DVNVHPTKREV
Sbjct:  233 FKMEGFISSANYSAKKTTMVLFINDRLVECTSLKRAIEVVYSAILPKASKPFIYMSISLPPEHVDVNVHPTKREV 307          
BLAST of mRNA_H-elongata_contig50201.12245.1 vs. uniprot
Match: A0A2K1JYA9_PHYPA (DNA_mis_repair domain-containing protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JYA9_PHYPA)

HSP 1 Score: 102 bits (254), Expect = 1.580e-23
Identity = 45/75 (60.00%), Postives = 59/75 (78.67%), Query Frame = 3
Query:   30 FRAKGLISGANYSAKRSDFILFINDRLVESASIKKAVEAAYKDVLPKSTHPFVYLGITMPSRHLDVNVHPTKREV 254
            F+  GLIS ANYS+KRS  +LFINDRLVE  +++KA+E  Y  +LPK++ PF+Y+ I +P  H+DVNVHPTKREV
Sbjct:  248 FQMDGLISSANYSSKRSSMVLFINDRLVECTALRKAIELVYATILPKASKPFIYMSIHLPPEHVDVNVHPTKREV 322          
BLAST of mRNA_H-elongata_contig50201.12245.1 vs. uniprot
Match: A0A6P6CVJ0_PTEVA (DNA mismatch repair protein Mlh1 n=1 Tax=Pteropus vampyrus TaxID=132908 RepID=A0A6P6CVJ0_PTEVA)

HSP 1 Score: 102 bits (254), Expect = 1.580e-23
Identity = 48/78 (61.54%), Postives = 61/78 (78.21%), Query Frame = 3
Query:   21 TLAFRAKGLISGANYSAKRSDFILFINDRLVESASIKKAVEAAYKDVLPKSTHPFVYLGITMPSRHLDVNVHPTKREV 254
            TLAF+ KG IS ANYS K+  F+LFIN RLVESAS++KA+E  Y   LPK+THPF+YL + +  +++DVNVHPTK EV
Sbjct:  218 TLAFKMKGYISNANYSVKKCIFLLFINHRLVESASLRKAIETVYAAYLPKNTHPFLYLSLEISPQNVDVNVHPTKHEV 295          
BLAST of mRNA_H-elongata_contig50201.12245.1 vs. uniprot
Match: A0A4S8JX11_MUSBA (DNA_mis_repair domain-containing protein n=7 Tax=Musa TaxID=4640 RepID=A0A4S8JX11_MUSBA)

HSP 1 Score: 102 bits (254), Expect = 1.590e-23
Identity = 44/75 (58.67%), Postives = 58/75 (77.33%), Query Frame = 3
Query:   30 FRAKGLISGANYSAKRSDFILFINDRLVESASIKKAVEAAYKDVLPKSTHPFVYLGITMPSRHLDVNVHPTKREV 254
            F   G IS ANY+AK++  +LFINDRLVE  ++K+AVE AY   LPK++ PF+Y+ I +PS H+DVN+HPTKREV
Sbjct:  265 FEMNGFISNANYTAKKTTMVLFINDRLVECTALKRAVEVAYSSTLPKASRPFIYMSIKLPSEHVDVNIHPTKREV 339          
BLAST of mRNA_H-elongata_contig50201.12245.1 vs. uniprot
Match: UPI0003BB842A (DNA mismatch repair protein Mlh1 isoform X2 n=1 Tax=Myotis brandtii TaxID=109478 RepID=UPI0003BB842A)

HSP 1 Score: 102 bits (253), Expect = 2.160e-23
Identity = 48/78 (61.54%), Postives = 60/78 (76.92%), Query Frame = 3
Query:   21 TLAFRAKGLISGANYSAKRSDFILFINDRLVESASIKKAVEAAYKDVLPKSTHPFVYLGITMPSRHLDVNVHPTKREV 254
            TLAF+ KG IS ANYS K+  F+LFIN RLVES S+KKA+E  Y   LPK+THPF+YL + +  +++DVNVHPTK EV
Sbjct:  204 TLAFKMKGYISNANYSVKKCIFLLFINHRLVESTSLKKAIETVYAAYLPKNTHPFLYLSLEISPQNVDVNVHPTKHEV 281          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50201.12245.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIJ0_ECTSI2.000e-3784.34MutL protein homolog 1 n=1 Tax=Ectocarpus siliculo... [more]
A0A7S2RJJ5_9STRA9.130e-2768.42Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A836CHJ0_9STRA3.830e-2564.00DNA_mis_repair domain-containing protein n=1 Tax=T... [more]
A0A0K1P0S1_9MAGN2.550e-2458.67MutL-like protein 1 (Fragment) n=1 Tax=Schisandra ... [more]
A8W2K5_HUMAN6.280e-2457.69MutL-like 1 protein (Fragment) n=1 Tax=Homo sapien... [more]
A0A097PJR4_GINBI8.210e-2458.67MLH1 (Fragment) n=1 Tax=Ginkgo biloba TaxID=3311 R... [more]
A0A2K1JYA9_PHYPA1.580e-2360.00DNA_mis_repair domain-containing protein n=2 Tax=P... [more]
A0A6P6CVJ0_PTEVA1.580e-2361.54DNA mismatch repair protein Mlh1 n=1 Tax=Pteropus ... [more]
A0A4S8JX11_MUSBA1.590e-2358.67DNA_mis_repair domain-containing protein n=7 Tax=M... [more]
UPI0003BB842A2.160e-2361.54DNA mismatch repair protein Mlh1 isoform X2 n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig50201contigH-elongata_contig50201:3033..3997 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size255
Cds size222
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig50201.12245.1prot_H-elongata_contig50201.12245.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig50201 3065..3997 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930825.5603225-UTR-H-elongata_contig50201:3032..30641622930825.5603225-UTR-H-elongata_contig50201:3032..3064Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig50201 3033..3064 -
1691679586.7343464-UTR-H-elongata_contig50201:3032..30641691679586.7343464-UTR-H-elongata_contig50201:3032..3064Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig50201 3033..3064 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930825.57925-CDS-H-elongata_contig50201:3064..32121622930825.57925-CDS-H-elongata_contig50201:3064..3212Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50201 3065..3212 -
1691679586.7481399-CDS-H-elongata_contig50201:3064..32121691679586.7481399-CDS-H-elongata_contig50201:3064..3212Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50201 3065..3212 -
1622930825.5949163-CDS-H-elongata_contig50201:3923..39971622930825.5949163-CDS-H-elongata_contig50201:3923..3997Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50201 3924..3997 -
1691679586.761292-CDS-H-elongata_contig50201:3923..39971691679586.761292-CDS-H-elongata_contig50201:3923..3997Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50201 3924..3997 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig50201.12245.1

>prot_H-elongata_contig50201.12245.1 ID=prot_H-elongata_contig50201.12245.1|Name=mRNA_H-elongata_contig50201.12245.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=74bp
PQKRGFRRSHSGRRVLSRGLTTAPSGLTSSSLSTTGLSRVLPSRRRWRRP
TRTSCPRAHIPSSTWGLPCPVGT*
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mRNA from alignment at H-elongata_contig50201:3033..3997-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig50201.12245.1 ID=mRNA_H-elongata_contig50201.12245.1|Name=mRNA_H-elongata_contig50201.12245.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=965bp|location=Sequence derived from alignment at H-elongata_contig50201:3033..3997- (Himanthalia elongata Himel1 dioecious)
CCGCAGAAACGGGGCTTTCGACGCTCGCATTCCGGGCGAAGGGTCTTATC TCGGGGGCTAACTACAGCGCCAAGGTGTGTTGGCAACGGTAATCATCACC GTTATTTTTTTTTGCACAAACAGCAAAAATTATGGACTACGGCTATAGCG GGTGCAATGAGATTTGTGATGTGCGCAACGCCGTGACTGGAGGCAGACCC AAAGGGCGTGAATGCGTGGATTCAAACAGGAAGATGTAGGCACGGTACGG GAAGGCAAGGACATCGCGGCTGCTGCAGATCGGATCGTGTTGCTTCCGCG CGCTCGTGTACTATACTATGTTCATATATATATATATATATATAGTTGTG CGGGCGCGAGCGCGAGTGCGAGCGTTTATGTACGTTTGCTCTTTCGCTCG CTTTTATTGCGGTTGCGTGGTTCCGACTTGCCGGCTAATAGTGTGTCGCA AAGTACCGGGACTTCGTAACCCCACCATGAATTTTCTTATCTTGCCTTTA TTCGAGTATGTCCTCCTCGCTTGACAATCGGACGCCTCACGGTGTGTATT AGACGTATTTTCCCACTTTGCTCTTTGCGCCAAACACGCCTCTCTCTCTT TTGGAGGCACAAGAAAACAACAAGTGGATTTCTAGTTCACCGTTCAGCGT CTGTTCGATTTGCCTCTTATCTAACACCGTTTGAATTTTGTGTGTGTGTG TGTGTGTGTGTGAGTGTGTGATCGGTGGACGATGCAATATGCTTGCTACA CACCGCTGTTTCAAATTTGCATGCTTCCACCGCAGCGGTCTGACTTCATC CTCTTTATCAACGACCGGCTTGTCGAGAGTGCTTCCATCAAGAAGGCGGT GGAGGCGGCCTACAAGGACGTCCTGCCCAAGAGCACACATCCCTTCGTCT ACCTGGGGATTACCATGCCCAGTCGGCACCTAGATGTCAACGTACACCCC ACCAAGAGGGAGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig50201:3033..3997-

>mRNA_H-elongata_contig50201.12245.1 ID=mRNA_H-elongata_contig50201.12245.1|Name=mRNA_H-elongata_contig50201.12245.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=444bp|location=Sequence derived from alignment at H-elongata_contig50201:3033..3997- (Himanthalia elongata Himel1 dioecious)
CCGCAGAAACGGGGCTTTCGACGCTCGCATTCCGGGCGAAGGGTCTTATC
TCGGGGGCTAACTACAGCGCCAAGCCGCAGAAACGGGGCTTTCGACGCTC
GCATTCCGGGCGAAGGGTCTTATCTCGGGGGCTAACTACAGCGCCAAGCG
GTCTGACTTCATCCTCTTTATCAACGACCGGCTTGTCGAGAGTGCTTCCA
TCAAGAAGGCGGTGGAGGCGGCCTACAAGGACGTCCTGCCCAAGAGCACA
CATCCCTTCGTCTACCTGGGGATTACCATGCCCAGTCGGCACCTAGCGGT
CTGACTTCATCCTCTTTATCAACGACCGGCTTGTCGAGAGTGCTTCCATC
AAGAAGGCGGTGGAGGCGGCCTACAAGGACGTCCTGCCCAAGAGCACACA
TCCCTTCGTCTACCTGGGGATTACCATGCCCAGTCGGCACCTAG
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