mRNA_H-elongata_contig50201.12245.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig50201.12245.1 vs. uniprot
Match: D8LIJ0_ECTSI (MutL protein homolog 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIJ0_ECTSI) HSP 1 Score: 142 bits (357), Expect = 2.000e-37 Identity = 70/83 (84.34%), Postives = 75/83 (90.36%), Query Frame = 3
Query: 6 ETGLSTLAFRAKGLISGANYSAKRSDFILFINDRLVESASIKKAVEAAYKDVLPKSTHPFVYLGITMPSRHLDVNVHPTKREV 254
E S AF+AKGL+SGA+YSAKRSDFILFINDRLVES SIKK VE+AYKDVLPK+THPFVYLGITMPS HLDVNVHPTKREV
Sbjct: 260 EVAPSKFAFKAKGLVSGADYSAKRSDFILFINDRLVESPSIKKTVESAYKDVLPKNTHPFVYLGITMPSHHLDVNVHPTKREV 342
BLAST of mRNA_H-elongata_contig50201.12245.1 vs. uniprot
Match: A0A7S2RJJ5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RJJ5_9STRA) HSP 1 Score: 111 bits (278), Expect = 9.130e-27 Identity = 52/76 (68.42%), Postives = 61/76 (80.26%), Query Frame = 3
Query: 27 AFRAKGLISGANYSAKRSDFILFINDRLVESASIKKAVEAAYKDVLPKSTHPFVYLGITMPSRHLDVNVHPTKREV 254
AFR KG +S NYSAKR FILFIN RLVES +IKK+VE+ YKD+LP +HPFVYL + +P RH+DVNV PTKREV
Sbjct: 271 AFRVKGYVSNGNYSAKRPAFILFINHRLVESPAIKKSVESVYKDILPSGSHPFVYLSLELPGRHVDVNVSPTKREV 346
BLAST of mRNA_H-elongata_contig50201.12245.1 vs. uniprot
Match: A0A836CHJ0_9STRA (DNA_mis_repair domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHJ0_9STRA) HSP 1 Score: 107 bits (266), Expect = 3.830e-25 Identity = 48/75 (64.00%), Postives = 61/75 (81.33%), Query Frame = 3
Query: 30 FRAKGLISGANYSAKRSDFILFINDRLVESASIKKAVEAAYKDVLPKSTHPFVYLGITMPSRHLDVNVHPTKREV 254
FRA+G +S ANYS KR+ FILFIN RLV+S SI++ +E+ Y VLPK TH F+YL ++MP+ HLDVNVHPTK+EV
Sbjct: 274 FRARGFVSNANYSTKRAVFILFINHRLVDSTSIRRTLESVYSSVLPKGTHAFIYLALSMPAPHLDVNVHPTKQEV 348
BLAST of mRNA_H-elongata_contig50201.12245.1 vs. uniprot
Match: A0A0K1P0S1_9MAGN (MutL-like protein 1 (Fragment) n=1 Tax=Schisandra propinqua TaxID=124790 RepID=A0A0K1P0S1_9MAGN) HSP 1 Score: 102 bits (255), Expect = 2.550e-24 Identity = 44/75 (58.67%), Postives = 59/75 (78.67%), Query Frame = 3
Query: 30 FRAKGLISGANYSAKRSDFILFINDRLVESASIKKAVEAAYKDVLPKSTHPFVYLGITMPSRHLDVNVHPTKREV 254
F+ G IS ANYSAK++ +LFINDRLVE +++K+A+E Y LPK+ PF+Y+ IT+PS H+DVN+HPTKREV
Sbjct: 38 FKMDGFISNANYSAKKTTMVLFINDRLVECSALKRAIEVVYASTLPKAAKPFIYMSITLPSDHVDVNIHPTKREV 112
BLAST of mRNA_H-elongata_contig50201.12245.1 vs. uniprot
Match: A8W2K5_HUMAN (MutL-like 1 protein (Fragment) n=1 Tax=Homo sapiens TaxID=9606 RepID=A8W2K5_HUMAN) HSP 1 Score: 96.7 bits (239), Expect = 6.280e-24 Identity = 45/78 (57.69%), Postives = 58/78 (74.36%), Query Frame = 3
Query: 21 TLAFRAKGLISGANYSAKRSDFILFINDRLVESASIKKAVEAAYKDVLPKSTHPFVYLGITMPSRHLDVNVHPTKREV 254
TLAF+ G IS ANYS K+ +LFIN RLVES S++KA+E Y LPK+THPF+YL + + +++DVNVHPTK EV
Sbjct: 17 TLAFKMNGYISNANYSVKKCILLLFINHRLVESTSLRKAIETVYAAYLPKNTHPFLYLSLEISPQNVDVNVHPTKHEV 94
BLAST of mRNA_H-elongata_contig50201.12245.1 vs. uniprot
Match: A0A097PJR4_GINBI (MLH1 (Fragment) n=1 Tax=Ginkgo biloba TaxID=3311 RepID=A0A097PJR4_GINBI) HSP 1 Score: 103 bits (256), Expect = 8.210e-24 Identity = 44/75 (58.67%), Postives = 60/75 (80.00%), Query Frame = 3
Query: 30 FRAKGLISGANYSAKRSDFILFINDRLVESASIKKAVEAAYKDVLPKSTHPFVYLGITMPSRHLDVNVHPTKREV 254
F+ +G IS ANYSAK++ +LFINDRLVE S+K+A+E Y +LPK++ PF+Y+ I++P H+DVNVHPTKREV
Sbjct: 233 FKMEGFISSANYSAKKTTMVLFINDRLVECTSLKRAIEVVYSAILPKASKPFIYMSISLPPEHVDVNVHPTKREV 307
BLAST of mRNA_H-elongata_contig50201.12245.1 vs. uniprot
Match: A0A2K1JYA9_PHYPA (DNA_mis_repair domain-containing protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JYA9_PHYPA) HSP 1 Score: 102 bits (254), Expect = 1.580e-23 Identity = 45/75 (60.00%), Postives = 59/75 (78.67%), Query Frame = 3
Query: 30 FRAKGLISGANYSAKRSDFILFINDRLVESASIKKAVEAAYKDVLPKSTHPFVYLGITMPSRHLDVNVHPTKREV 254
F+ GLIS ANYS+KRS +LFINDRLVE +++KA+E Y +LPK++ PF+Y+ I +P H+DVNVHPTKREV
Sbjct: 248 FQMDGLISSANYSSKRSSMVLFINDRLVECTALRKAIELVYATILPKASKPFIYMSIHLPPEHVDVNVHPTKREV 322
BLAST of mRNA_H-elongata_contig50201.12245.1 vs. uniprot
Match: A0A6P6CVJ0_PTEVA (DNA mismatch repair protein Mlh1 n=1 Tax=Pteropus vampyrus TaxID=132908 RepID=A0A6P6CVJ0_PTEVA) HSP 1 Score: 102 bits (254), Expect = 1.580e-23 Identity = 48/78 (61.54%), Postives = 61/78 (78.21%), Query Frame = 3
Query: 21 TLAFRAKGLISGANYSAKRSDFILFINDRLVESASIKKAVEAAYKDVLPKSTHPFVYLGITMPSRHLDVNVHPTKREV 254
TLAF+ KG IS ANYS K+ F+LFIN RLVESAS++KA+E Y LPK+THPF+YL + + +++DVNVHPTK EV
Sbjct: 218 TLAFKMKGYISNANYSVKKCIFLLFINHRLVESASLRKAIETVYAAYLPKNTHPFLYLSLEISPQNVDVNVHPTKHEV 295
BLAST of mRNA_H-elongata_contig50201.12245.1 vs. uniprot
Match: A0A4S8JX11_MUSBA (DNA_mis_repair domain-containing protein n=7 Tax=Musa TaxID=4640 RepID=A0A4S8JX11_MUSBA) HSP 1 Score: 102 bits (254), Expect = 1.590e-23 Identity = 44/75 (58.67%), Postives = 58/75 (77.33%), Query Frame = 3
Query: 30 FRAKGLISGANYSAKRSDFILFINDRLVESASIKKAVEAAYKDVLPKSTHPFVYLGITMPSRHLDVNVHPTKREV 254
F G IS ANY+AK++ +LFINDRLVE ++K+AVE AY LPK++ PF+Y+ I +PS H+DVN+HPTKREV
Sbjct: 265 FEMNGFISNANYTAKKTTMVLFINDRLVECTALKRAVEVAYSSTLPKASRPFIYMSIKLPSEHVDVNIHPTKREV 339
BLAST of mRNA_H-elongata_contig50201.12245.1 vs. uniprot
Match: UPI0003BB842A (DNA mismatch repair protein Mlh1 isoform X2 n=1 Tax=Myotis brandtii TaxID=109478 RepID=UPI0003BB842A) HSP 1 Score: 102 bits (253), Expect = 2.160e-23 Identity = 48/78 (61.54%), Postives = 60/78 (76.92%), Query Frame = 3
Query: 21 TLAFRAKGLISGANYSAKRSDFILFINDRLVESASIKKAVEAAYKDVLPKSTHPFVYLGITMPSRHLDVNVHPTKREV 254
TLAF+ KG IS ANYS K+ F+LFIN RLVES S+KKA+E Y LPK+THPF+YL + + +++DVNVHPTK EV
Sbjct: 204 TLAFKMKGYISNANYSVKKCIFLLFINHRLVESTSLKKAIETVYAAYLPKNTHPFLYLSLEISPQNVDVNVHPTKHEV 281 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50201.12245.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig50201.12245.1 >prot_H-elongata_contig50201.12245.1 ID=prot_H-elongata_contig50201.12245.1|Name=mRNA_H-elongata_contig50201.12245.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=74bp PQKRGFRRSHSGRRVLSRGLTTAPSGLTSSSLSTTGLSRVLPSRRRWRRPback to top mRNA from alignment at H-elongata_contig50201:3033..3997- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig50201.12245.1 ID=mRNA_H-elongata_contig50201.12245.1|Name=mRNA_H-elongata_contig50201.12245.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=965bp|location=Sequence derived from alignment at H-elongata_contig50201:3033..3997- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig50201:3033..3997- >mRNA_H-elongata_contig50201.12245.1 ID=mRNA_H-elongata_contig50201.12245.1|Name=mRNA_H-elongata_contig50201.12245.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=444bp|location=Sequence derived from alignment at H-elongata_contig50201:3033..3997- (Himanthalia elongata Himel1 dioecious)back to top |