mRNA_H-elongata_contig50111.12239.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig50111.12239.1
Unique NamemRNA_H-elongata_contig50111.12239.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig50111.12239.1 vs. uniprot
Match: A0A6H5K220_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K220_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 7.910e-23
Identity = 62/85 (72.94%), Postives = 70/85 (82.35%), Query Frame = 1 
Query:    1 GEVVAKRSVFRPSIIKDVIWMVLNMIGLFFGTLSAKTPTRKRKSERGYHNYLGXXXXXXXXXXXXXXXXXRP---GPNIHGHQPP 246
            G+VVA+RSVFRPSII ++ W VLN++GLFFGT+S KTPTRK + ERGYHNYLG  XXXXXXXXXXXXXXX     GPNIH  QPP
Sbjct:    7 GQVVAQRSVFRPSIIMEMFWKVLNIVGLFFGTMSTKTPTRKPRKERGYHNYLGRGXXXXXXXXXXXXXXXXXXXRGPNIHTVQPP 91
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50111.12239.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K220_9PHAE7.910e-2372.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig50111contigH-elongata_contig50111:2716..3749 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionSelenoprotein SelK/SelG
Ec32 orthologEc-20_002490.1
Exons3
Model size246
Cds size246
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig50111.12239.1prot_H-elongata_contig50111.12239.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig50111 2716..3749 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930824.8553538-CDS-H-elongata_contig50111:2715..28011622930824.8553538-CDS-H-elongata_contig50111:2715..2801Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50111 2716..2801 +
1691679586.463372-CDS-H-elongata_contig50111:2715..28011691679586.463372-CDS-H-elongata_contig50111:2715..2801Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50111 2716..2801 +
1622930824.8723667-CDS-H-elongata_contig50111:3166..31851622930824.8723667-CDS-H-elongata_contig50111:3166..3185Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50111 3167..3185 +
1691679586.4728935-CDS-H-elongata_contig50111:3166..31851691679586.4728935-CDS-H-elongata_contig50111:3166..3185Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50111 3167..3185 +
1622930824.8905878-CDS-H-elongata_contig50111:3608..37491622930824.8905878-CDS-H-elongata_contig50111:3608..3749Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50111 3609..3749 +
1691679586.482631-CDS-H-elongata_contig50111:3608..37491691679586.482631-CDS-H-elongata_contig50111:3608..3749Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50111 3609..3749 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig50111.12239.1

>prot_H-elongata_contig50111.12239.1 ID=prot_H-elongata_contig50111.12239.1|Name=mRNA_H-elongata_contig50111.12239.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=82bp
GEVVAKRSVFRPSIIKDVIWMVLNMIGLFFGTLSAKTPTRKRKSERGYHN
YLGGGDDGGDGGGGDSRRRRRPGPNIHGHQPP
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mRNA from alignment at H-elongata_contig50111:2716..3749+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig50111.12239.1 ID=mRNA_H-elongata_contig50111.12239.1|Name=mRNA_H-elongata_contig50111.12239.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1034bp|location=Sequence derived from alignment at H-elongata_contig50111:2716..3749+ (Himanthalia elongata Himel1 dioecious)
GGCGAAGTGGTGGCGAAGCGATCGGTGTTCAGGCCGAGCATCATCAAAGA
CGTAATTTGGATGGTGCTGAACATGATCGGCCTCTTGTGAGTTAACGAAC
GACGTAGCTTCAGAGAGGGACAGATTAGCGTGCCCCCCCCCCCACCCCGA
AACCATTTTGGCCGCAAAAACGCGGGAAGGCACGGAAATGCTATCCGCCG
TCGCTTATCCTTCCATGCCTTTTTACCCCACGTTGCAAACGAAGCCTTAA
ATCTTCTTCGTCGGTTGGTCCATAGACTTTTGGTACTATCGCCATCTGTG
TATCCTAAGCTCAAAACATGTGTAATCGAGTTTTACTGGGCTCCTGGTGA
TCACGGCGCTCATCTAATCTGCGCCTGCTTTGAACGCGCTTATCTAATCT
GTCCTGCTCGTGCGCGGATTCGACGGGAAAATGCCTGGTGGGACCGAGCA
GCTTCGGTACATTGTCAGCTGTGAGTGAAATCCGAGCCTTGAGGCTGTTT
TGAATGTCGTCGGGGAGGGGTCAGGGATGTTATCTCTTTTGATTATTTTT
CACGCTATTTGGCAAGGCTTGATTTAAGTGTGTGACGTACCGAGCACTGA
CCCCGGATTCGACAAGACAAGCCCCTGGTACTCGTACAGTACCCAATTAC
TCGTGCAGCGTTTTCTCGAAACATTCTAATGGAGCTGGCGAGTGTGCCGT
TCGCCGTTCTTCTCGTTGTCGTGTTGGGGGATTTTTTACTGTCAGCAGCA
AGAGTAATACTGCCGTTCTATATTTGCCTTTTGGGTATCGGTAGCACGAG
ATGCAGCTGCAGATCCAGTCAATACGAAGAGAGCGTTCCCCCTTGCAAAC
AAATAGTATTGTTTTGGCATTTACCGACTGCTTCATGTCGCAGAAAACTC
CCACGCGCAAGCGCAAGTCCGAGCGCGGTTATCACAACTACCTTGGTGGA
GGAGATGACGGTGGTGATGGGGGCGGTGGAGACAGCAGAAGACGGAGACG
GCCAGGACCAAATATCCACGGCCATCAACCTCCT
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Coding sequence (CDS) from alignment at H-elongata_contig50111:2716..3749+

>mRNA_H-elongata_contig50111.12239.1 ID=mRNA_H-elongata_contig50111.12239.1|Name=mRNA_H-elongata_contig50111.12239.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=492bp|location=Sequence derived from alignment at H-elongata_contig50111:2716..3749+ (Himanthalia elongata Himel1 dioecious)
GGCGAAGTGGTGGCGAAGCGATCGGTGTTCAGGCCGAGCATCATCAAAGA
CGTAATTTGGATGGTGCTGAACATGATCGGCCTCTTGGCGAAGTGGTGGC
GAAGCGATCGGTGTTCAGGCCGAGCATCATCAAAGACGTAATTTGGATGG
TGCTGAACATGATCGGCCTCTTCTTCGGTACATTGTCAGCTCTTCGGTAC
ATTGTCAGCTAAAACTCCCACGCGCAAGCGCAAGTCCGAGCGCGGTTATC
ACAACTACCTTGGTGGAGGAGATGACGGTGGTGATGGGGGCGGTGGAGAC
AGCAGAAGACGGAGACGGCCAGGACCAAATATCCACGGCCATCAACCTCC
TAAAACTCCCACGCGCAAGCGCAAGTCCGAGCGCGGTTATCACAACTACC
TTGGTGGAGGAGATGACGGTGGTGATGGGGGCGGTGGAGACAGCAGAAGA
CGGAGACGGCCAGGACCAAATATCCACGGCCATCAACCTCCT
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