mRNA_H-elongata_contig501.12237.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig501.12237.1
Unique NamemRNA_H-elongata_contig501.12237.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig501.12237.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig501contigH-elongata_contig501:16897..17924 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size417
Cds size414
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig501.12237.1prot_H-elongata_contig501.12237.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig501 16897..17922 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930824.6796246-CDS-H-elongata_contig501:16896..170941622930824.6796246-CDS-H-elongata_contig501:16896..17094Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig501 16897..17094 +
1691679586.404696-CDS-H-elongata_contig501:16896..170941691679586.404696-CDS-H-elongata_contig501:16896..17094Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig501 16897..17094 +
1622930824.694576-CDS-H-elongata_contig501:17318..174681622930824.694576-CDS-H-elongata_contig501:17318..17468Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig501 17319..17468 +
1691679586.413724-CDS-H-elongata_contig501:17318..174681691679586.413724-CDS-H-elongata_contig501:17318..17468Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig501 17319..17468 +
1622930824.709724-CDS-H-elongata_contig501:17856..179221622930824.709724-CDS-H-elongata_contig501:17856..17922Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig501 17857..17922 +
1691679586.4233222-CDS-H-elongata_contig501:17856..179221691679586.4233222-CDS-H-elongata_contig501:17856..17922Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig501 17857..17922 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig501.12237.1

>prot_H-elongata_contig501.12237.1 ID=prot_H-elongata_contig501.12237.1|Name=mRNA_H-elongata_contig501.12237.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=138bp
GLRKELEESQAMVLTKARGARDREAFRKQEGKMCAAKTKAESERERAKSE
IKRLKAELRSRDMEREETCSRLEEANTELTDARRLMREAGADREHLLHAV
KETCEETEKFLAGDVKNTSKVEATDGGESLARRSRRRL
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mRNA from alignment at H-elongata_contig501:16897..17924+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig501.12237.1 ID=mRNA_H-elongata_contig501.12237.1|Name=mRNA_H-elongata_contig501.12237.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1028bp|location=Sequence derived from alignment at H-elongata_contig501:16897..17924+ (Himanthalia elongata Himel1 dioecious)
GGCTTGCGGAAGGAGCTAGAAGAGTCTCAAGCGATGGTCCTCACCAAGGC
GCGAGGGGCTCGAGATCGAGAGGCTTTCAGGAAGCAAGAAGGCAAGATGT
GTGCCGCAAAAACGAAGGCAGAATCGGAGCGAGAACGAGCGAAGTCGGAG
ATAAAGCGGTTGAAGGCCGAGCTGCGGAGTAGAGACATGGAAAGAGAGGT
AAGTTTGTTTCCTACGGTTGGTTCATAGGCTGCTCATTTTGAATCGAACC
CCAGCAGGAAAAGTACGCGAAAATACAACACCGCCCTTCTCTGCGAGCTG
CAGTACCGCCAATGACCCACGGTCAAAGAATCCTGCAGGTTTTTGTCGTA
TGTCCTTTAAGATCTCAAACTCATATCAGCTGTTCCAAGGCGCCCAGGCT
ATGGATCGTTCTCGGTGTACAGGAGACATGCAGCCGTCTTGAAGAGGCGA
ACACGGAGCTCACAGACGCACGAAGGCTGATGCGGGAAGCCGGAGCTGAC
CGTGAGCATTTGCTACACGCGGTGAAAGAAACCTGTGAGGAGACGGAGAA
ATTTCTTGCTGGCGATGTGAAGGTACAATACTCTTATTCTTAAGACTATC
AGGCCCGTTTCACCAAATAATATGTCACGCCCGAGTATTCTCTGTAATTT
GGTTTCGTGTCAGAATCGAGGTACCGCAGGTGATGCGATACCAACATTAT
TTGTTTTTGGTATACCCGCGTTGTTTTTCGGAGAGATGATTGACTGCCAA
AGATACTTGTCTATAAAATATATCTGGATGAAGATTATTTTCTTGAACAC
CGCAGGCCATGCCTGCTGAATAAAGAAAATGCAATGGTGAGAAACGCCCC
CCAAATCGCTACGGTATCACTCGGGGGGGGGCTTGTTTCAAAGTATCACC
TACGGCACTAGAGTCTACACCGTTTTCTTTTGCCGTTTTCGTTTGCGCTT
TGCTCTGAAGAACACGTCAAAGGTCGAGGCCACCGATGGCGGCGAATCGC
TGGCTCGACGCAGTAGACGACGGCTGGC
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Coding sequence (CDS) from alignment at H-elongata_contig501:16897..17924+

>mRNA_H-elongata_contig501.12237.1 ID=mRNA_H-elongata_contig501.12237.1|Name=mRNA_H-elongata_contig501.12237.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=828bp|location=Sequence derived from alignment at H-elongata_contig501:16897..17924+ (Himanthalia elongata Himel1 dioecious)
GGCTTGCGGAAGGAGCTAGAAGAGTCTCAAGCGATGGTCCTCACCAAGGC
GCGAGGGGCTCGAGATCGAGAGGCTTTCAGGAAGCAAGAAGGCAAGATGT
GTGCCGCAAAAACGAAGGCAGAATCGGAGCGAGAACGAGCGAAGTCGGAG
ATAAAGCGGTTGAAGGCCGAGCTGCGGAGTAGAGACATGGAAAGAGAGGG
CTTGCGGAAGGAGCTAGAAGAGTCTCAAGCGATGGTCCTCACCAAGGCGC
GAGGGGCTCGAGATCGAGAGGCTTTCAGGAAGCAAGAAGGCAAGATGTGT
GCCGCAAAAACGAAGGCAGAATCGGAGCGAGAACGAGCGAAGTCGGAGAT
AAAGCGGTTGAAGGCCGAGCTGCGGAGTAGAGACATGGAAAGAGAGGAGA
CATGCAGCCGTCTTGAAGAGGCGAACACGGAGCTCACAGACGCACGAAGG
CTGATGCGGGAAGCCGGAGCTGACCGTGAGCATTTGCTACACGCGGTGAA
AGAAACCTGTGAGGAGACGGAGAAATTTCTTGCTGGCGATGTGAAGGAGA
CATGCAGCCGTCTTGAAGAGGCGAACACGGAGCTCACAGACGCACGAAGG
CTGATGCGGGAAGCCGGAGCTGACCGTGAGCATTTGCTACACGCGGTGAA
AGAAACCTGTGAGGAGACGGAGAAATTTCTTGCTGGCGATGTGAAGAACA
CGTCAAAGGTCGAGGCCACCGATGGCGGCGAATCGCTGGCTCGACGCAGT
AGACGACGGCTGAACACGTCAAAGGTCGAGGCCACCGATGGCGGCGAATC
GCTGGCTCGACGCAGTAGACGACGGCTG
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