mRNA_H-elongata_contig501.12236.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig501.12236.1
Unique NamemRNA_H-elongata_contig501.12236.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig501.12236.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig501contigH-elongata_contig501:12312..12614 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size303
Cds size303
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930824.7478707-CDS-H-elongata_contig501:12311..126141622930824.7478707-CDS-H-elongata_contig501:12311..12614Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig501 12312..12614 +
1691679586.433917-CDS-H-elongata_contig501:12311..126141691679586.433917-CDS-H-elongata_contig501:12311..12614Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig501 12312..12614 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig501.12236.1prot_H-elongata_contig501.12236.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig501 12312..12614 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig501.12236.1

>prot_H-elongata_contig501.12236.1 ID=prot_H-elongata_contig501.12236.1|Name=mRNA_H-elongata_contig501.12236.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp
MQESELAAASAVEAENSSERILTAGVELANVSQDVNSPSALGRELESRIQ
QLEGRARIAETRRHGTMTKINRLKREIAGLEEKLTIKEAAKVSATKKEDK
V
back to top

mRNA from alignment at H-elongata_contig501:12312..12614+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig501.12236.1 ID=mRNA_H-elongata_contig501.12236.1|Name=mRNA_H-elongata_contig501.12236.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=303bp|location=Sequence derived from alignment at H-elongata_contig501:12312..12614+ (Himanthalia elongata Himel1 dioecious)
ATGCAGGAAAGCGAACTGGCAGCCGCATCGGCAGTAGAAGCGGAAAATTC
GAGCGAGCGAATTTTGACCGCAGGTGTCGAATTAGCGAATGTCTCACAGG
ATGTGAATAGCCCTAGTGCATTGGGGAGAGAGCTGGAATCTCGAATTCAG
CAACTCGAAGGACGAGCGCGCATCGCTGAGACACGACGTCACGGAACGAT
GACTAAGATTAATCGACTGAAGCGAGAAATTGCAGGCCTAGAAGAAAAGC
TTACCATCAAAGAAGCCGCCAAAGTATCTGCGACAAAAAAGGAAGATAAA
GTT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig501:12312..12614+

>mRNA_H-elongata_contig501.12236.1 ID=mRNA_H-elongata_contig501.12236.1|Name=mRNA_H-elongata_contig501.12236.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at H-elongata_contig501:12312..12614+ (Himanthalia elongata Himel1 dioecious)
ATGCAGGAAAGCGAACTGGCAGCCGCATCGGCAGTAGAAGCGGAAAATTC
GAGCGAGCGAATTTTGACCGCAGGTGTCGAATTAGCGAATGTCTCACAGG
ATGTGAATAGCCCTAGTGCATTGGGGAGAGAGCTGGAATCTCGAATTCAG
CAACTCGAAGGACGAGCGCGCATCGCTGAGACACGACGTCACGGAACGAT
GACTAAGATTAATCGACTGAAGCGAGAAATTGCAGGCCTAGAAGAAAAGC
TTACCATCAAAGAAGCCGCCAAAGTATCTGCGACAAAAAAGGAAGATAAA
GTTATGCAGGAAAGCGAACTGGCAGCCGCATCGGCAGTAGAAGCGGAAAA
TTCGAGCGAGCGAATTTTGACCGCAGGTGTCGAATTAGCGAATGTCTCAC
AGGATGTGAATAGCCCTAGTGCATTGGGGAGAGAGCTGGAATCTCGAATT
CAGCAACTCGAAGGACGAGCGCGCATCGCTGAGACACGACGTCACGGAAC
GATGACTAAGATTAATCGACTGAAGCGAGAAATTGCAGGCCTAGAAGAAA
AGCTTACCATCAAAGAAGCCGCCAAAGTATCTGCGACAAAAAAGGAAGAT
AAAGTT
back to top