mRNA_H-elongata_contig50097.12235.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig50097.12235.1
Unique NamemRNA_H-elongata_contig50097.12235.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig50097.12235.1 vs. uniprot
Match: A0A6H5KS53_9PHAE (UBC core domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS53_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 5.600e-47
Identity = 73/79 (92.41%), Postives = 75/79 (94.94%), Query Frame = 1
Query:    7 GAVDTVYAGETYRMRIRFPTNYPIESPEVVFVPPAPLHPHIYTNGHICLSILYDEWSPALTIQSVCLSILSMLSSCTCK 243
            GA DTVYAGETYR+RIRFP NYPIE+PEVVFVP APLHPHIYTNGHICLSILYDEWSPALTIQSVCLSILSMLSSCT K
Sbjct:   20 GAADTVYAGETYRIRIRFPANYPIEAPEVVFVPTAPLHPHIYTNGHICLSILYDEWSPALTIQSVCLSILSMLSSCTAK 98          
BLAST of mRNA_H-elongata_contig50097.12235.1 vs. uniprot
Match: A0A1D1ZE26_9ARAE (Putative ubiquitin-conjugating enzyme E2 16 (Fragment) n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1ZE26_9ARAE)

HSP 1 Score: 127 bits (320), Expect = 2.020e-36
Identity = 55/81 (67.90%), Postives = 70/81 (86.42%), Query Frame = 1
Query:    1 VIGAVDTVYAGETYRMRIRFPTNYPIESPEVVFVPPAPLHPHIYTNGHICLSILYDEWSPALTIQSVCLSILSMLSSCTCK 243
            VIGA  T+YAGETY++++ FP +YP+E+P+V+F+ P PLHPHIY+NGHICL ILYD WSPA+T+ SVC+SILSMLSS T K
Sbjct:    9 VIGATGTLYAGETYQLQVDFPEHYPMEAPQVIFLQPVPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLSSSTAK 89          
BLAST of mRNA_H-elongata_contig50097.12235.1 vs. uniprot
Match: A0A2C9VWK6_MANES (UBC core domain-containing protein n=1 Tax=Manihot esculenta TaxID=3983 RepID=A0A2C9VWK6_MANES)

HSP 1 Score: 128 bits (321), Expect = 2.290e-36
Identity = 56/82 (68.29%), Postives = 71/82 (86.59%), Query Frame = 1
Query:    1 VIGAVDTVYAGETYRMRIRFPTNYPIESPEVVFVPPAPLHPHIYTNGHICLSILYDEWSPALTIQSVCLSILSMLSSCTCKV 246
            V GA  T+YA ETY++++ FP +YP+E+P+V+F+PPAPLHPHIY+NGHICL ILYD WSPA+T+ SVC+SILSMLSS T KV
Sbjct:   50 VNGAPGTLYANETYQLQVDFPEHYPMEAPQVIFLPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLSSATAKV 131          
BLAST of mRNA_H-elongata_contig50097.12235.1 vs. uniprot
Match: A0A1Y2EQE3_9FUNG (Ubiquitin-conjugating enzyme n=2 Tax=Neocallimastix californiae TaxID=1754190 RepID=A0A1Y2EQE3_9FUNG)

HSP 1 Score: 128 bits (322), Expect = 2.310e-36
Identity = 58/83 (69.88%), Postives = 71/83 (85.54%), Query Frame = 1
Query:    1 VIGAVDTVYAGETYRMRIRFPTNYPIESPEVVFVPPAPLHPHIYTNGHICLSILYDEWSPALTIQSVCLSILSMLSSCTCKVN 249
            +IGA DT+Y GET+ ++  F  NYPI+SPEVVF+   P+HPHIY+NGHICLSILYD+WSPALT+ SVCLSI+SMLSSCT KV+
Sbjct:   39 IIGAKDTLYEGETFTLKFSFSKNYPIDSPEVVFINHIPVHPHIYSNGHICLSILYDQWSPALTVTSVCLSIISMLSSCTRKVH 121          
BLAST of mRNA_H-elongata_contig50097.12235.1 vs. uniprot
Match: B9R805_RICCO (Ubiquitin-conjugating enzyme E2-18 kDa, putative n=6 Tax=Pentapetalae TaxID=1437201 RepID=B9R805_RICCO)

HSP 1 Score: 129 bits (323), Expect = 2.380e-36
Identity = 55/81 (67.90%), Postives = 70/81 (86.42%), Query Frame = 1
Query:    1 VIGAVDTVYAGETYRMRIRFPTNYPIESPEVVFVPPAPLHPHIYTNGHICLSILYDEWSPALTIQSVCLSILSMLSSCTCK 243
            V GA  T+YA ETY++++ FP NYP+E+P+V+F+PPAPLHPHIY+NGHICL ILYD WSPA+T+ S+C+SILSMLSS T K
Sbjct:   50 VNGAPGTLYANETYQLQVDFPENYPMEAPQVIFIPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISILSMLSSATVK 130          
BLAST of mRNA_H-elongata_contig50097.12235.1 vs. uniprot
Match: A0A7C9ARC2_OPUST (E2 ubiquitin-conjugating enzyme n=3 Tax=Spermatophyta TaxID=58024 RepID=A0A7C9ARC2_OPUST)

HSP 1 Score: 127 bits (320), Expect = 2.980e-36
Identity = 55/81 (67.90%), Postives = 70/81 (86.42%), Query Frame = 1
Query:    1 VIGAVDTVYAGETYRMRIRFPTNYPIESPEVVFVPPAPLHPHIYTNGHICLSILYDEWSPALTIQSVCLSILSMLSSCTCK 243
            V GA  T+YA ETY++++ FP +YP+E+P+V+FVPPAPLHPHIY+NGHICL ILYD WSPA+T+ S+C+SILSMLSS T K
Sbjct:   22 VTGAPGTLYANETYQLQVDFPEHYPMEAPQVIFVPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISILSMLSSSTSK 102          
BLAST of mRNA_H-elongata_contig50097.12235.1 vs. uniprot
Match: A0A161ZR94_DAUCS (UBC core domain-containing protein n=2 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A161ZR94_DAUCS)

HSP 1 Score: 128 bits (322), Expect = 3.380e-36
Identity = 57/81 (70.37%), Postives = 71/81 (87.65%), Query Frame = 1
Query:    1 VIGAVDTVYAGETYRMRIRFPTNYPIESPEVVFVPPAPLHPHIYTNGHICLSILYDEWSPALTIQSVCLSILSMLSSCTCK 243
            VIGA  T+Y+ ETY++++ FP +YP+E+P+VVF+PPAPLHPHIY+NGHICL ILYD WSPA+T+ SVCLSILSMLSS T K
Sbjct:   50 VIGAPGTLYSNETYQLQVDFPEHYPMEAPQVVFIPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCLSILSMLSSSTEK 130          
BLAST of mRNA_H-elongata_contig50097.12235.1 vs. uniprot
Match: A0A835RPG3_VANPL (UBC core domain-containing protein n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835RPG3_VANPL)

HSP 1 Score: 129 bits (325), Expect = 4.220e-36
Identity = 56/81 (69.14%), Postives = 71/81 (87.65%), Query Frame = 1
Query:    1 VIGAVDTVYAGETYRMRIRFPTNYPIESPEVVFVPPAPLHPHIYTNGHICLSILYDEWSPALTIQSVCLSILSMLSSCTCK 243
            ++GA  T+YA ETY++++ FP +YP+E+P+VVFVPPAPLHPHIY+NGHICL ILYD WSPA+T+ SVC+SILSMLSS T K
Sbjct:   52 LVGAAGTLYANETYQLQVDFPEHYPMEAPQVVFVPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLSSSTVK 132          
BLAST of mRNA_H-elongata_contig50097.12235.1 vs. uniprot
Match: A0A7J7DLH0_TRIWF (Ubiquitin conjugating enzyme n=1 Tax=Tripterygium wilfordii TaxID=458696 RepID=A0A7J7DLH0_TRIWF)

HSP 1 Score: 128 bits (322), Expect = 4.770e-36
Identity = 57/82 (69.51%), Postives = 71/82 (86.59%), Query Frame = 1
Query:    1 VIGAVDTVYAGETYRMRIRFPTNYPIESPEVVFVPPAPLHPHIYTNGHICLSILYDEWSPALTIQSVCLSILSMLSSCTCKV 246
            V GA  T+YA ETY++++ FP +YP+E+P+VVFVPPAPLHPHIY+NGHICL ILYD WSPA+T+ S+C+SILSMLSS T KV
Sbjct:   22 VNGAPGTLYANETYQLQVDFPDHYPMEAPQVVFVPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISILSMLSSSTLKV 103          
BLAST of mRNA_H-elongata_contig50097.12235.1 vs. uniprot
Match: A0A835RPT5_VANPL (UBC core domain-containing protein n=2 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835RPT5_VANPL)

HSP 1 Score: 129 bits (325), Expect = 5.240e-36
Identity = 56/81 (69.14%), Postives = 71/81 (87.65%), Query Frame = 1
Query:    1 VIGAVDTVYAGETYRMRIRFPTNYPIESPEVVFVPPAPLHPHIYTNGHICLSILYDEWSPALTIQSVCLSILSMLSSCTCK 243
            ++GA  T+YA ETY++++ FP +YP+E+P+VVFVPPAPLHPHIY+NGHICL ILYD WSPA+T+ SVC+SILSMLSS T K
Sbjct:   52 LVGAAGTLYANETYQLQVDFPEHYPMEAPQVVFVPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLSSSTVK 132          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50097.12235.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KS53_9PHAE5.600e-4792.41UBC core domain-containing protein n=1 Tax=Ectocar... [more]
A0A1D1ZE26_9ARAE2.020e-3667.90Putative ubiquitin-conjugating enzyme E2 16 (Fragm... [more]
A0A2C9VWK6_MANES2.290e-3668.29UBC core domain-containing protein n=1 Tax=Manihot... [more]
A0A1Y2EQE3_9FUNG2.310e-3669.88Ubiquitin-conjugating enzyme n=2 Tax=Neocallimasti... [more]
B9R805_RICCO2.380e-3667.90Ubiquitin-conjugating enzyme E2-18 kDa, putative n... [more]
A0A7C9ARC2_OPUST2.980e-3667.90E2 ubiquitin-conjugating enzyme n=3 Tax=Spermatoph... [more]
A0A161ZR94_DAUCS3.380e-3670.37UBC core domain-containing protein n=2 Tax=Daucus ... [more]
A0A835RPG3_VANPL4.220e-3669.14UBC core domain-containing protein n=1 Tax=Vanilla... [more]
A0A7J7DLH0_TRIWF4.770e-3669.51Ubiquitin conjugating enzyme n=1 Tax=Tripterygium ... [more]
A0A835RPT5_VANPL5.240e-3669.14UBC core domain-containing protein n=2 Tax=Vanilla... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig50097contigH-elongata_contig50097:120..977 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score130.6
Seed ortholog evalue3.5e-28
Seed eggNOG ortholog3988.XP_002510448.1
Preferred nameUBC17
KEGG koko:K10688
KEGG Pathwayko04120,map04120
GOsGO:0000209,GO:0001101,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009719,GO:0009725,GO:0009739,GO:0009987,GO:0010033,GO:0010498,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019899,GO:0019941,GO:0030163,GO:0031625,GO:0032446,GO:0033993,GO:0036211,GO:0042221,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044424,GO:0044464,GO:0050896,GO:0051603,GO:0061630,GO:0061659,GO:0070647,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901700
EggNOG free text desc.Belongs to the ubiquitin-conjugating enzyme family
EggNOG OGs37QBF@33090,3GAXC@35493,4JT31@91835,COG5078@1,KOG0427@2759
EC2.3.2.25
COG Functional cat.O
Best tax levelfabids
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionUbiquitin-conjugating enzyme/RWD-like
Ec32 orthologEc-23_003010.1
Exons2
Model size249
Cds size249
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930824.6293054-CDS-H-elongata_contig50097:119..2631622930824.6293054-CDS-H-elongata_contig50097:119..263Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50097 120..263 -
1691679586.3828242-CDS-H-elongata_contig50097:119..2631691679586.3828242-CDS-H-elongata_contig50097:119..263Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50097 120..263 -
1622930824.6421757-CDS-H-elongata_contig50097:872..9771622930824.6421757-CDS-H-elongata_contig50097:872..977Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50097 873..977 -
1691679586.394543-CDS-H-elongata_contig50097:872..9771691679586.394543-CDS-H-elongata_contig50097:872..977Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50097 873..977 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig50097.12235.1prot_H-elongata_contig50097.12235.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig50097 120..977 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig50097.12235.1

>prot_H-elongata_contig50097.12235.1 ID=prot_H-elongata_contig50097.12235.1|Name=mRNA_H-elongata_contig50097.12235.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=83bp
VIGAVDTVYAGETYRMRIRFPTNYPIESPEVVFVPPAPLHPHIYTNGHIC
LSILYDEWSPALTIQSVCLSILSMLSSCTCKVN
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mRNA from alignment at H-elongata_contig50097:120..977-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig50097.12235.1 ID=mRNA_H-elongata_contig50097.12235.1|Name=mRNA_H-elongata_contig50097.12235.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=858bp|location=Sequence derived from alignment at H-elongata_contig50097:120..977- (Himanthalia elongata Himel1 dioecious)
GTGATAGGCGCTGTCGATACTGTGTACGCAGGCGAAACGTATCGCATGAG GATACGGTTCCCGACAAATTATCCGATTGAGTCTCCCGAGGTTGTCTTTG TTCCGGTGAGTAAAGCAGCAGGTTCCTAGGAAGGAATCATGTACCACCCA AGGATCGATTTCCGCAATTCGCCACAGATAGCGCTGTGAAAGGCAGGCCT CCGGTCGTCTCGACGATCGGGCTCTCTTCGACCTGTCTGTCTCCGCATCG GGAAGCGCGCAGAACCCAAGCGAGGTCTTGAGCTCGAGCACGCCCGAAAC AAAATTGGGAGAGGTCGGGTCGTTGACTACGACGATCCGCCATTCGTGTG TGTGCTCATCGATTTATGTGCCTTTTTGGTTGGGGGGAGGGGGAGGGGGG GGGGCTTGTGCCCAAAGGATGGCCTATTGATATCGTCATTTTGCAATCAC TGTTCGACCGCAAACACCCGCTGTGACGCCTTGCATGGCGACCACGGTGT TCATCGAGGCTTTTTTGCAAAGATCGTCCGTGTCTCACCAGAGAGGCGTC ATTGCCGCCTTCTTTTGATATCCCGTTTTGTTTTAGGGACCCGCGTAAAG AAGACGCGACTCGTATTATCAAACCCCTTTTTACTCTACCACGCGCTATC GTTCCCGTGCGCCTCGTCCCCGCGATTTCCCCACCCGTTGCCTGCTTGCA ACCTATCCCGGAAGCCGGCGCCTCTGCACCCGCACATTTATACGAACGGT CACATTTGTCTATCCATCTTGTACGACGAGTGGAGCCCGGCGCTGACTAT CCAAAGCGTATGTTTGAGCATTCTCTCGATGCTGTCAAGCTGCACGTGCA AGGTGAAC
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Coding sequence (CDS) from alignment at H-elongata_contig50097:120..977-

>mRNA_H-elongata_contig50097.12235.1 ID=mRNA_H-elongata_contig50097.12235.1|Name=mRNA_H-elongata_contig50097.12235.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=498bp|location=Sequence derived from alignment at H-elongata_contig50097:120..977- (Himanthalia elongata Himel1 dioecious)
GTGATAGGCGCTGTCGATACTGTGTACGCAGGCGAAACGTATCGCATGAG
GATACGGTTCCCGACAAATTATCCGATTGAGTCTCCCGAGGTTGTCTTTG
TTCCGGTGATAGGCGCTGTCGATACTGTGTACGCAGGCGAAACGTATCGC
ATGAGGATACGGTTCCCGACAAATTATCCGATTGAGTCTCCCGAGGTTGT
CTTTGTTCCGCCGGCGCCTCTGCACCCGCACATTTATACGAACGGTCACA
TTTGTCTATCCATCTTGTACGACGAGTGGAGCCCGGCGCTGACTATCCAA
AGCGTATGTTTGAGCATTCTCTCGATGCTGTCAAGCTGCACGTGCAAGGT
GAACCCGGCGCCTCTGCACCCGCACATTTATACGAACGGTCACATTTGTC
TATCCATCTTGTACGACGAGTGGAGCCCGGCGCTGACTATCCAAAGCGTA
TGTTTGAGCATTCTCTCGATGCTGTCAAGCTGCACGTGCAAGGTGAAC
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