mRNA_H-elongata_contig50043.12226.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig50043.12226.1
Unique NamemRNA_H-elongata_contig50043.12226.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig50043.12226.1 vs. uniprot
Match: D8LLB1_ECTSI (Tryptophan synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLB1_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 1.020e-14
Identity = 49/77 (63.64%), Postives = 54/77 (70.13%), Query Frame = 1 
Query:   76 AFLGNRRISLSTKSTARSGGERGSS-VNMLATEPILKATSKSASSRLAKVFDGVVETKKAAFITNLTAGYPKKGDTV 303
            A  G R   L T STAR GG   SS + M+ATEP+LK TSKSAS RLAKVF  V E K+AAFI  LTAGYPK+ DTV
Sbjct:   17 AGAGARAAPLHTASTARGGGAAASSPLRMVATEPVLKPTSKSASPRLAKVFGDVAEDKQAAFIPYLTAGYPKRDDTV 93
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50043.12226.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LLB1_ECTSI1.020e-1463.64Tryptophan synthase n=2 Tax=Ectocarpus TaxID=2879 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig50043contigH-elongata_contig50043:855..1405 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.0
Seed ortholog evalue1.7e-13
Seed eggNOG ortholog2880.D8LLB1
Preferred nameTRP5
KEGG rclassRC00209,RC00210,RC00700,RC00701,RC02868
KEGG koko:K01694,ko:K01695,ko:K01696,ko:K10882,ko:K13222
KEGG ReactionR00674,R02340,R02722
KEGG Pathwayko00260,ko00400,ko00402,ko01100,ko01110,ko01130,ko01230,ko03440,ko03460,map00260,map00400,map00402,map01100,map01110,map01130,map01230,map03440,map03460
KEGG ModuleM00023
GOsGO:0000162,GO:0003674,GO:0003824,GO:0004834,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005886,GO:0006082,GO:0006520,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0006970,GO:0006979,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009605,GO:0009606,GO:0009607,GO:0009617,GO:0009628,GO:0009629,GO:0009630,GO:0009651,GO:0009683,GO:0009684,GO:0009719,GO:0009725,GO:0009735,GO:0009850,GO:0009851,GO:0009941,GO:0009987,GO:0010033,GO:0010817,GO:0016020,GO:0016043,GO:0016053,GO:0016829,GO:0016830,GO:0016832,GO:0016835,GO:0016836,GO:0018130,GO:0019438,GO:0019752,GO:0019904,GO:0031967,GO:0031975,GO:0032787,GO:0033036,GO:0033037,GO:0033554,GO:0033984,GO:0034641,GO:0034754,GO:0042221,GO:0042401,GO:0042430,GO:0042435,GO:0042445,GO:0042446,GO:0042545,GO:0042742,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045229,GO:0046219,GO:0046394,GO:0046483,GO:0050896,GO:0051179,GO:0051641,GO:0051704,GO:0051707,GO:0051716,GO:0052386,GO:0052482,GO:0052542,GO:0052543,GO:0052544,GO:0052545,GO:0065007,GO:0065008,GO:0070727,GO:0071554,GO:0071555,GO:0071704,GO:0071840,GO:0071944,GO:0072330,GO:0098542,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
EggNOG free text desc.tryptophan synthase activity
EggNOG OGsCOG0133@1,COG0159@1,KOG1395@2759,KOG4175@2759
Ec32 ortholog descriptionTryptophan synthase (alpha / beta chains)
Ec32 orthologEc-24_002360.1
EC4.1.2.8,4.2.1.20
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03400
Hectar predicted targeting categoryother localisation
Exons2
Model size303
Cds size303
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930823.7788885-CDS-H-elongata_contig50043:854..10451622930823.7788885-CDS-H-elongata_contig50043:854..1045Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50043 855..1045 +
1691679585.9668612-CDS-H-elongata_contig50043:854..10451691679585.9668612-CDS-H-elongata_contig50043:854..1045Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50043 855..1045 +
1622930823.7921424-CDS-H-elongata_contig50043:1293..14051622930823.7921424-CDS-H-elongata_contig50043:1293..1405Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50043 1294..1405 +
1691679585.979668-CDS-H-elongata_contig50043:1293..14051691679585.979668-CDS-H-elongata_contig50043:1293..1405Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50043 1294..1405 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig50043.12226.1prot_H-elongata_contig50043.12226.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig50043 855..1405 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig50043.12226.1

>prot_H-elongata_contig50043.12226.1 ID=prot_H-elongata_contig50043.12226.1|Name=mRNA_H-elongata_contig50043.12226.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp
GAGRSIQHAGRRGLASEAASQRTSLAFLGNRRISLSTKSTARSGGERGSS
VNMLATEPILKATSKSASSRLAKVFDGVVETKKAAFITNLTAGYPKKGDT
V
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mRNA from alignment at H-elongata_contig50043:855..1405+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig50043.12226.1 ID=mRNA_H-elongata_contig50043.12226.1|Name=mRNA_H-elongata_contig50043.12226.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=551bp|location=Sequence derived from alignment at H-elongata_contig50043:855..1405+ (Himanthalia elongata Himel1 dioecious)
GGAGCAGGTCGGAGCATCCAGCATGCTGGAAGGCGAGGGCTCGCGTCCGA
AGCTGCGTCCCAGCGGACATCGCTGGCGTTCTTAGGTAACAGGCGCATAT
CGCTGTCCACAAAATCAACTGCTAGGAGTGGGGGCGAGCGTGGGTCTTCG
GTAAACATGCTTGCAACGGAGCCAATTTTGAAGGCTACCAGGTGACGAGT
TGAGCTTACAGAGGTACCTATCTACCTAGATGGGGTTCTAGAACAAAAAA
AGGCGTTGGTGTGAGTGGCGGACGGTGCGCGGCCAGCGCCCCTACTCCAC
TCCTTTTCTAAGAGGTTAGGGAATGCTTAAAGGACCACTCCGCTCGATTG
AAATATATTGATGGTCCATCGGGTTCCCTTTGCCTCACTGTACTTAACGT
GGATGATGCTGCGTGATTGGTTACCCTATGACGTCGCAGCAAGAGCGCCA
GTTCCCGGTTGGCCAAGGTGTTCGACGGCGTGGTGGAGACAAAGAAGGCC
GCGTTCATCACGAACCTGACGGCGGGCTATCCCAAGAAGGGGGACACGGT
G
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Coding sequence (CDS) from alignment at H-elongata_contig50043:855..1405+

>mRNA_H-elongata_contig50043.12226.1 ID=mRNA_H-elongata_contig50043.12226.1|Name=mRNA_H-elongata_contig50043.12226.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at H-elongata_contig50043:855..1405+ (Himanthalia elongata Himel1 dioecious)
GGAGCAGGTCGGAGCATCCAGCATGCTGGAAGGCGAGGGCTCGCGTCCGA
AGCTGCGTCCCAGCGGACATCGCTGGCGTTCTTAGGTAACAGGCGCATAT
CGCTGTCCACAAAATCAACTGCTAGGAGTGGGGGCGAGCGTGGGTCTTCG
GTAAACATGCTTGCAACGGAGCCAATTTTGAAGGCTACCAGGGAGCAGGT
CGGAGCATCCAGCATGCTGGAAGGCGAGGGCTCGCGTCCGAAGCTGCGTC
CCAGCGGACATCGCTGGCGTTCTTAGGTAACAGGCGCATATCGCTGTCCA
CAAAATCAACTGCTAGGAGTGGGGGCGAGCGTGGGTCTTCGGTAAACATG
CTTGCAACGGAGCCAATTTTGAAGGCTACCAGCAAGAGCGCCAGTTCCCG
GTTGGCCAAGGTGTTCGACGGCGTGGTGGAGACAAAGAAGGCCGCGTTCA
TCACGAACCTGACGGCGGGCTATCCCAAGAAGGGGGACACGGTGCAAGAG
CGCCAGTTCCCGGTTGGCCAAGGTGTTCGACGGCGTGGTGGAGACAAAGA
AGGCCGCGTTCATCACGAACCTGACGGCGGGCTATCCCAAGAAGGGGGAC
ACGGTG
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