mRNA_H-elongata_contig50008.12223.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig50008.12223.1
Unique NamemRNA_H-elongata_contig50008.12223.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig50008.12223.1 vs. uniprot
Match: D7FKT7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKT7_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 2.520e-19
Identity = 48/111 (43.24%), Postives = 64/111 (57.66%), Query Frame = 1 
Query:    1 PCPRSGNTMVLLDGPGSFTEDTRLLVVYGGVSLVKSRKNLNCVKAHADGED-------------------GLSQRTLSYNADVWVFRVSRRTWYCPNITGELPRGRYGHVS 276
            P  RSG+TMV+L+G  +  EDTRLLVV+GGVS   S   L+   AH D +D                   G+ Q+ L Y+ADV VF +   TW+CP+ +G+LP GRYGH +
Sbjct:  167 PSSRSGHTMVVLNGADNLREDTRLLVVFGGVSTTNSDHPLD---AHLDEKDPTCSSDCDDAGDAMGISGGGIRQQPLHYHADVRVFNIGLSTWHCPDTSGDLPEGRYGHTA 274
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig50008.12223.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FKT7_ECTSI2.520e-1943.24Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig50008contigH-elongata_contig50008:3853..4128 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score81.6
Seed ortholog evalue1.9e-13
Seed eggNOG ortholog2880.D7FKT7
EggNOG free text desc.nitrile biosynthetic process
EggNOG OGsKOG0379@1,KOG0379@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionGalactose oxidase/kelch, beta-propeller
Ec32 orthologEc-17_001330.1
Exons1
Model size276
Cds size252
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930823.552024-UTR-H-elongata_contig50008:3852..38761622930823.552024-UTR-H-elongata_contig50008:3852..3876Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig50008 3853..3876 +
1691679585.898773-UTR-H-elongata_contig50008:3852..38761691679585.898773-UTR-H-elongata_contig50008:3852..3876Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig50008 3853..3876 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930823.5686116-CDS-H-elongata_contig50008:3876..41281622930823.5686116-CDS-H-elongata_contig50008:3876..4128Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50008 3877..4128 +
1691679585.9088445-CDS-H-elongata_contig50008:3876..41281691679585.9088445-CDS-H-elongata_contig50008:3876..4128Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig50008 3877..4128 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig50008.12223.1prot_H-elongata_contig50008.12223.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig50008 3877..4128 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig50008.12223.1

>prot_H-elongata_contig50008.12223.1 ID=prot_H-elongata_contig50008.12223.1|Name=mRNA_H-elongata_contig50008.12223.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=84bp
MVLLDGPGSFTEDTRLLVVYGGVSLVKSRKNLNCVKAHADGEDGLSQRTL
SYNADVWVFRVSRRTWYCPNITGELPRGRYGHVS
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mRNA from alignment at H-elongata_contig50008:3853..4128+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig50008.12223.1 ID=mRNA_H-elongata_contig50008.12223.1|Name=mRNA_H-elongata_contig50008.12223.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=276bp|location=Sequence derived from alignment at H-elongata_contig50008:3853..4128+ (Himanthalia elongata Himel1 dioecious)
CCATGCCCAAGATCAGGAAACACTATGGTGCTTCTTGACGGACCGGGTAG
CTTCACGGAAGATACAAGACTCCTTGTGGTTTATGGCGGTGTGTCCTTGG
TAAAAAGTAGGAAAAATCTAAATTGCGTCAAGGCTCATGCGGATGGGGAG
GACGGCCTTTCACAACGAACGTTATCGTACAACGCTGATGTATGGGTGTT
TCGCGTAAGTCGCCGTACTTGGTACTGCCCGAATATTACAGGCGAACTTC
CTAGAGGAAGATATGGTCATGTTTCG
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Coding sequence (CDS) from alignment at H-elongata_contig50008:3853..4128+

>mRNA_H-elongata_contig50008.12223.1 ID=mRNA_H-elongata_contig50008.12223.1|Name=mRNA_H-elongata_contig50008.12223.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=504bp|location=Sequence derived from alignment at H-elongata_contig50008:3853..4128+ (Himanthalia elongata Himel1 dioecious)
ATGGTGCTTCTTGACGGACCGGGTAGCTTCACGGAAGATACAAGACTCCT
TGTGGTTTATGGCGGTGTGTCCTTGGTAAAAAGTAGGAAAAATCTAAATT
GCGTCAAGGCTCATGCGGATGGGGAGGACGGCCTTTCACAACGAACGTTA
TCGTACAACGCTGATGTATGGGTGTTTCGCGTAAGTCGCCGTACTTGGTA
CTGCCCGAATATTACAGGCGAACTTCCTAGAGGAAGATATGGTCATGTTT
CGATGGTGCTTCTTGACGGACCGGGTAGCTTCACGGAAGATACAAGACTC
CTTGTGGTTTATGGCGGTGTGTCCTTGGTAAAAAGTAGGAAAAATCTAAA
TTGCGTCAAGGCTCATGCGGATGGGGAGGACGGCCTTTCACAACGAACGT
TATCGTACAACGCTGATGTATGGGTGTTTCGCGTAAGTCGCCGTACTTGG
TACTGCCCGAATATTACAGGCGAACTTCCTAGAGGAAGATATGGTCATGT
TTCG
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