mRNA_H-elongata_contig49996.12222.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig49996.12222.1 vs. uniprot
Match: A0A835ZAF2_9STRA (UmuC domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAF2_9STRA) HSP 1 Score: 90.9 bits (224), Expect = 5.570e-22 Identity = 45/73 (61.64%), Postives = 57/73 (78.08%), Query Frame = 1
Query: 1 VEEVLNPSLRGKPIGIQQKYLMVTCNYVARHLGVRKMKSVTEARKPPLSKRCPSLIMLDGEDLTYYREASEAI 219
VE +L+PSLRG+P+G+QQKYLMVTCNYVAR GV+KM++VT A + CP LI+ +GE LT YREASE +
Sbjct: 27 VEVLLDPSLRGRPVGVQQKYLMVTCNYVARAAGVKKMQAVTGALQA-----CPELIVKNGETLTKYREASERV 94
BLAST of mRNA_H-elongata_contig49996.12222.1 vs. uniprot
Match: UPI001455C4A8 (DNA polymerase iota-like n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI001455C4A8) HSP 1 Score: 91.7 bits (226), Expect = 6.440e-20 Identity = 46/73 (63.01%), Postives = 54/73 (73.97%), Query Frame = 1
Query: 1 VEEVLNPSLRGKPIGIQQKYLMVTCNYVARHLGVRKMKSVTEARKPPLSKRCPSLIMLDGEDLTYYREASEAI 219
VE V NPSLR KP+GIQQKYL+VTCNYVAR GV K+ +TEA K RCP L+++ GEDLT+YRE S I
Sbjct: 69 VEMVRNPSLRSKPLGIQQKYLLVTCNYVARSHGVTKLMRITEALK-----RCPDLVIVSGEDLTHYREMSYKI 136
BLAST of mRNA_H-elongata_contig49996.12222.1 vs. uniprot
Match: UPI001CF3DD0B (DNA polymerase iota-like isoform X1 n=3 Tax=Bufo gargarizans TaxID=30331 RepID=UPI001CF3DD0B) HSP 1 Score: 88.6 bits (218), Expect = 1.010e-19 Identity = 42/70 (60.00%), Postives = 53/70 (75.71%), Query Frame = 1
Query: 1 VEEVLNPSLRGKPIGIQQKYLMVTCNYVARHLGVRKMKSVTEARKPPLSKRCPSLIMLDGEDLTYYREAS 210
VE + NP LR KP+G+QQK LMVTCNYVAR+LGV K S+ EAR+ +CP L+++ GEDLT+YRE S
Sbjct: 59 VEMIRNPELREKPLGVQQKTLMVTCNYVARNLGVNKCMSIREARE-----KCPQLVLVSGEDLTHYREMS 123
BLAST of mRNA_H-elongata_contig49996.12222.1 vs. uniprot
Match: A0A8C4X5F6_ERPCA (DNA polymerase iota n=6 Tax=Polypteridae TaxID=8289 RepID=A0A8C4X5F6_ERPCA) HSP 1 Score: 90.9 bits (224), Expect = 1.200e-19 Identity = 42/70 (60.00%), Postives = 55/70 (78.57%), Query Frame = 1
Query: 1 VEEVLNPSLRGKPIGIQQKYLMVTCNYVARHLGVRKMKSVTEARKPPLSKRCPSLIMLDGEDLTYYREAS 210
VE + NPSLR KP+G+QQKYLMVTCNYVAR LGV K+ ++ EA++ +CP L++++GEDLT YRE S
Sbjct: 75 VEMIRNPSLRNKPVGVQQKYLMVTCNYVARELGVNKIMTIGEAKE-----KCPQLVLVNGEDLTPYREMS 139
BLAST of mRNA_H-elongata_contig49996.12222.1 vs. uniprot
Match: UPI0003340249 (DNA polymerase iota isoform X1 n=3 Tax=Echinops telfairi TaxID=9371 RepID=UPI0003340249) HSP 1 Score: 90.5 bits (223), Expect = 1.630e-19 Identity = 41/70 (58.57%), Postives = 55/70 (78.57%), Query Frame = 1
Query: 1 VEEVLNPSLRGKPIGIQQKYLMVTCNYVARHLGVRKMKSVTEARKPPLSKRCPSLIMLDGEDLTYYREAS 210
VE + NP L+GKP+G+QQKYL+VTCNY ARHLGV K+ +V EA++ +CP L++++GEDLT YRE S
Sbjct: 65 VEMISNPELKGKPLGVQQKYLVVTCNYEARHLGVTKLMNVREAKE-----KCPQLVLVNGEDLTRYREMS 129
BLAST of mRNA_H-elongata_contig49996.12222.1 vs. uniprot
Match: UPI001CFAE872 (DNA polymerase iota isoform X1 n=2 Tax=Protopterus annectens TaxID=7888 RepID=UPI001CFAE872) HSP 1 Score: 90.5 bits (223), Expect = 1.640e-19 Identity = 43/70 (61.43%), Postives = 54/70 (77.14%), Query Frame = 1
Query: 1 VEEVLNPSLRGKPIGIQQKYLMVTCNYVARHLGVRKMKSVTEARKPPLSKRCPSLIMLDGEDLTYYREAS 210
VE + NP LRGKP+G+QQKYL+VTCNYVAR LGV KM V EA++ +CP LI+++GEDL+ YRE S
Sbjct: 87 VEMIRNPELRGKPVGVQQKYLLVTCNYVARKLGVDKMMLVNEAKE-----KCPELILVNGEDLSNYREVS 151
BLAST of mRNA_H-elongata_contig49996.12222.1 vs. uniprot
Match: UPI0003318DBD (DNA polymerase iota n=1 Tax=Sorex araneus TaxID=42254 RepID=UPI0003318DBD) HSP 1 Score: 90.1 bits (222), Expect = 2.230e-19 Identity = 41/70 (58.57%), Postives = 56/70 (80.00%), Query Frame = 1
Query: 1 VEEVLNPSLRGKPIGIQQKYLMVTCNYVARHLGVRKMKSVTEARKPPLSKRCPSLIMLDGEDLTYYREAS 210
VE +LNP L+GKP+G+QQKYL+VTCNY AR LGV+K+ SV +A++ +CP L++++GEDLT YRE S
Sbjct: 30 VEMILNPELKGKPLGVQQKYLVVTCNYEARKLGVKKVMSVRDAKE-----KCPQLVLVNGEDLTRYREMS 94
BLAST of mRNA_H-elongata_contig49996.12222.1 vs. uniprot
Match: UPI0014194B5D (DNA polymerase iota isoform X3 n=1 Tax=Lacerta agilis TaxID=80427 RepID=UPI0014194B5D) HSP 1 Score: 89.0 bits (219), Expect = 3.750e-19 Identity = 41/70 (58.57%), Postives = 54/70 (77.14%), Query Frame = 1
Query: 1 VEEVLNPSLRGKPIGIQQKYLMVTCNYVARHLGVRKMKSVTEARKPPLSKRCPSLIMLDGEDLTYYREAS 210
VE + NP LRG+P+G+QQKYLMVTCNY AR+ GV+K SV EA++ +CP L++++GEDLT YRE S
Sbjct: 62 VEMICNPELRGRPLGVQQKYLMVTCNYEARNAGVKKCMSVKEAKE-----KCPELVLVNGEDLTKYREMS 126
BLAST of mRNA_H-elongata_contig49996.12222.1 vs. uniprot
Match: A0A8C4NGW5_EPTBU (Polymerase (DNA directed) iota n=2 Tax=Eptatretus burgeri TaxID=7764 RepID=A0A8C4NGW5_EPTBU) HSP 1 Score: 89.4 bits (220), Expect = 4.170e-19 Identity = 41/73 (56.16%), Postives = 55/73 (75.34%), Query Frame = 1
Query: 1 VEEVLNPSLRGKPIGIQQKYLMVTCNYVARHLGVRKMKSVTEARKPPLSKRCPSLIMLDGEDLTYYREASEAI 219
VE + NP LR P+G+QQKYL+VTCNYVAR +GV K+ +VT AR+ RCP L+++ GEDLT+YRE S+ +
Sbjct: 77 VEMLRNPELRNVPLGVQQKYLVVTCNYVARRMGVNKLMTVTAARE-----RCPRLVLVSGEDLTHYREMSDQV 144
BLAST of mRNA_H-elongata_contig49996.12222.1 vs. uniprot
Match: A0A0N8JX03_SCLFO (UmuC domain-containing protein n=1 Tax=Scleropages formosus TaxID=113540 RepID=A0A0N8JX03_SCLFO) HSP 1 Score: 87.4 bits (215), Expect = 4.280e-19 Identity = 40/73 (54.79%), Postives = 56/73 (76.71%), Query Frame = 1
Query: 1 VEEVLNPSLRGKPIGIQQKYLMVTCNYVARHLGVRKMKSVTEARKPPLSKRCPSLIMLDGEDLTYYREASEAI 219
VE + NP+LR P+G+QQKY++VTCNYVAR GV+KM VT+A++ +CP L+++ GEDLT YREAS ++
Sbjct: 127 VEMIRNPALRAVPLGVQQKYIIVTCNYVARQHGVKKMMLVTDAKE-----KCPQLVLVSGEDLTRYREASYSV 194 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig49996.12222.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig49996.12222.1 >prot_H-elongata_contig49996.12222.1 ID=prot_H-elongata_contig49996.12222.1|Name=mRNA_H-elongata_contig49996.12222.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=74bp VEEVLNPSLRGKPIGIQQKYLMVTCNYVARHLGVRKMKSVTEARKPPLSKback to top mRNA from alignment at H-elongata_contig49996:2537..3238- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig49996.12222.1 ID=mRNA_H-elongata_contig49996.12222.1|Name=mRNA_H-elongata_contig49996.12222.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=702bp|location=Sequence derived from alignment at H-elongata_contig49996:2537..3238- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig49996:2537..3238- >mRNA_H-elongata_contig49996.12222.1 ID=mRNA_H-elongata_contig49996.12222.1|Name=mRNA_H-elongata_contig49996.12222.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=444bp|location=Sequence derived from alignment at H-elongata_contig49996:2537..3238- (Himanthalia elongata Himel1 dioecious)back to top |