mRNA_H-elongata_contig49996.12222.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig49996.12222.1
Unique NamemRNA_H-elongata_contig49996.12222.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig49996.12222.1 vs. uniprot
Match: A0A835ZAF2_9STRA (UmuC domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAF2_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 5.570e-22
Identity = 45/73 (61.64%), Postives = 57/73 (78.08%), Query Frame = 1
Query:    1 VEEVLNPSLRGKPIGIQQKYLMVTCNYVARHLGVRKMKSVTEARKPPLSKRCPSLIMLDGEDLTYYREASEAI 219
            VE +L+PSLRG+P+G+QQKYLMVTCNYVAR  GV+KM++VT A +      CP LI+ +GE LT YREASE +
Sbjct:   27 VEVLLDPSLRGRPVGVQQKYLMVTCNYVARAAGVKKMQAVTGALQA-----CPELIVKNGETLTKYREASERV 94          
BLAST of mRNA_H-elongata_contig49996.12222.1 vs. uniprot
Match: UPI001455C4A8 (DNA polymerase iota-like n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI001455C4A8)

HSP 1 Score: 91.7 bits (226), Expect = 6.440e-20
Identity = 46/73 (63.01%), Postives = 54/73 (73.97%), Query Frame = 1
Query:    1 VEEVLNPSLRGKPIGIQQKYLMVTCNYVARHLGVRKMKSVTEARKPPLSKRCPSLIMLDGEDLTYYREASEAI 219
            VE V NPSLR KP+GIQQKYL+VTCNYVAR  GV K+  +TEA K     RCP L+++ GEDLT+YRE S  I
Sbjct:   69 VEMVRNPSLRSKPLGIQQKYLLVTCNYVARSHGVTKLMRITEALK-----RCPDLVIVSGEDLTHYREMSYKI 136          
BLAST of mRNA_H-elongata_contig49996.12222.1 vs. uniprot
Match: UPI001CF3DD0B (DNA polymerase iota-like isoform X1 n=3 Tax=Bufo gargarizans TaxID=30331 RepID=UPI001CF3DD0B)

HSP 1 Score: 88.6 bits (218), Expect = 1.010e-19
Identity = 42/70 (60.00%), Postives = 53/70 (75.71%), Query Frame = 1
Query:    1 VEEVLNPSLRGKPIGIQQKYLMVTCNYVARHLGVRKMKSVTEARKPPLSKRCPSLIMLDGEDLTYYREAS 210
            VE + NP LR KP+G+QQK LMVTCNYVAR+LGV K  S+ EAR+     +CP L+++ GEDLT+YRE S
Sbjct:   59 VEMIRNPELREKPLGVQQKTLMVTCNYVARNLGVNKCMSIREARE-----KCPQLVLVSGEDLTHYREMS 123          
BLAST of mRNA_H-elongata_contig49996.12222.1 vs. uniprot
Match: A0A8C4X5F6_ERPCA (DNA polymerase iota n=6 Tax=Polypteridae TaxID=8289 RepID=A0A8C4X5F6_ERPCA)

HSP 1 Score: 90.9 bits (224), Expect = 1.200e-19
Identity = 42/70 (60.00%), Postives = 55/70 (78.57%), Query Frame = 1
Query:    1 VEEVLNPSLRGKPIGIQQKYLMVTCNYVARHLGVRKMKSVTEARKPPLSKRCPSLIMLDGEDLTYYREAS 210
            VE + NPSLR KP+G+QQKYLMVTCNYVAR LGV K+ ++ EA++     +CP L++++GEDLT YRE S
Sbjct:   75 VEMIRNPSLRNKPVGVQQKYLMVTCNYVARELGVNKIMTIGEAKE-----KCPQLVLVNGEDLTPYREMS 139          
BLAST of mRNA_H-elongata_contig49996.12222.1 vs. uniprot
Match: UPI0003340249 (DNA polymerase iota isoform X1 n=3 Tax=Echinops telfairi TaxID=9371 RepID=UPI0003340249)

HSP 1 Score: 90.5 bits (223), Expect = 1.630e-19
Identity = 41/70 (58.57%), Postives = 55/70 (78.57%), Query Frame = 1
Query:    1 VEEVLNPSLRGKPIGIQQKYLMVTCNYVARHLGVRKMKSVTEARKPPLSKRCPSLIMLDGEDLTYYREAS 210
            VE + NP L+GKP+G+QQKYL+VTCNY ARHLGV K+ +V EA++     +CP L++++GEDLT YRE S
Sbjct:   65 VEMISNPELKGKPLGVQQKYLVVTCNYEARHLGVTKLMNVREAKE-----KCPQLVLVNGEDLTRYREMS 129          
BLAST of mRNA_H-elongata_contig49996.12222.1 vs. uniprot
Match: UPI001CFAE872 (DNA polymerase iota isoform X1 n=2 Tax=Protopterus annectens TaxID=7888 RepID=UPI001CFAE872)

HSP 1 Score: 90.5 bits (223), Expect = 1.640e-19
Identity = 43/70 (61.43%), Postives = 54/70 (77.14%), Query Frame = 1
Query:    1 VEEVLNPSLRGKPIGIQQKYLMVTCNYVARHLGVRKMKSVTEARKPPLSKRCPSLIMLDGEDLTYYREAS 210
            VE + NP LRGKP+G+QQKYL+VTCNYVAR LGV KM  V EA++     +CP LI+++GEDL+ YRE S
Sbjct:   87 VEMIRNPELRGKPVGVQQKYLLVTCNYVARKLGVDKMMLVNEAKE-----KCPELILVNGEDLSNYREVS 151          
BLAST of mRNA_H-elongata_contig49996.12222.1 vs. uniprot
Match: UPI0003318DBD (DNA polymerase iota n=1 Tax=Sorex araneus TaxID=42254 RepID=UPI0003318DBD)

HSP 1 Score: 90.1 bits (222), Expect = 2.230e-19
Identity = 41/70 (58.57%), Postives = 56/70 (80.00%), Query Frame = 1
Query:    1 VEEVLNPSLRGKPIGIQQKYLMVTCNYVARHLGVRKMKSVTEARKPPLSKRCPSLIMLDGEDLTYYREAS 210
            VE +LNP L+GKP+G+QQKYL+VTCNY AR LGV+K+ SV +A++     +CP L++++GEDLT YRE S
Sbjct:   30 VEMILNPELKGKPLGVQQKYLVVTCNYEARKLGVKKVMSVRDAKE-----KCPQLVLVNGEDLTRYREMS 94          
BLAST of mRNA_H-elongata_contig49996.12222.1 vs. uniprot
Match: UPI0014194B5D (DNA polymerase iota isoform X3 n=1 Tax=Lacerta agilis TaxID=80427 RepID=UPI0014194B5D)

HSP 1 Score: 89.0 bits (219), Expect = 3.750e-19
Identity = 41/70 (58.57%), Postives = 54/70 (77.14%), Query Frame = 1
Query:    1 VEEVLNPSLRGKPIGIQQKYLMVTCNYVARHLGVRKMKSVTEARKPPLSKRCPSLIMLDGEDLTYYREAS 210
            VE + NP LRG+P+G+QQKYLMVTCNY AR+ GV+K  SV EA++     +CP L++++GEDLT YRE S
Sbjct:   62 VEMICNPELRGRPLGVQQKYLMVTCNYEARNAGVKKCMSVKEAKE-----KCPELVLVNGEDLTKYREMS 126          
BLAST of mRNA_H-elongata_contig49996.12222.1 vs. uniprot
Match: A0A8C4NGW5_EPTBU (Polymerase (DNA directed) iota n=2 Tax=Eptatretus burgeri TaxID=7764 RepID=A0A8C4NGW5_EPTBU)

HSP 1 Score: 89.4 bits (220), Expect = 4.170e-19
Identity = 41/73 (56.16%), Postives = 55/73 (75.34%), Query Frame = 1
Query:    1 VEEVLNPSLRGKPIGIQQKYLMVTCNYVARHLGVRKMKSVTEARKPPLSKRCPSLIMLDGEDLTYYREASEAI 219
            VE + NP LR  P+G+QQKYL+VTCNYVAR +GV K+ +VT AR+     RCP L+++ GEDLT+YRE S+ +
Sbjct:   77 VEMLRNPELRNVPLGVQQKYLVVTCNYVARRMGVNKLMTVTAARE-----RCPRLVLVSGEDLTHYREMSDQV 144          
BLAST of mRNA_H-elongata_contig49996.12222.1 vs. uniprot
Match: A0A0N8JX03_SCLFO (UmuC domain-containing protein n=1 Tax=Scleropages formosus TaxID=113540 RepID=A0A0N8JX03_SCLFO)

HSP 1 Score: 87.4 bits (215), Expect = 4.280e-19
Identity = 40/73 (54.79%), Postives = 56/73 (76.71%), Query Frame = 1
Query:    1 VEEVLNPSLRGKPIGIQQKYLMVTCNYVARHLGVRKMKSVTEARKPPLSKRCPSLIMLDGEDLTYYREASEAI 219
            VE + NP+LR  P+G+QQKY++VTCNYVAR  GV+KM  VT+A++     +CP L+++ GEDLT YREAS ++
Sbjct:  127 VEMIRNPALRAVPLGVQQKYIIVTCNYVARQHGVKKMMLVTDAKE-----KCPQLVLVSGEDLTRYREASYSV 194          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig49996.12222.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZAF2_9STRA5.570e-2261.64UmuC domain-containing protein n=1 Tax=Tribonema m... [more]
UPI001455C4A86.440e-2063.01DNA polymerase iota-like n=1 Tax=Asterias rubens T... [more]
UPI001CF3DD0B1.010e-1960.00DNA polymerase iota-like isoform X1 n=3 Tax=Bufo g... [more]
A0A8C4X5F6_ERPCA1.200e-1960.00DNA polymerase iota n=6 Tax=Polypteridae TaxID=828... [more]
UPI00033402491.630e-1958.57DNA polymerase iota isoform X1 n=3 Tax=Echinops te... [more]
UPI001CFAE8721.640e-1961.43DNA polymerase iota isoform X1 n=2 Tax=Protopterus... [more]
UPI0003318DBD2.230e-1958.57DNA polymerase iota n=1 Tax=Sorex araneus TaxID=42... [more]
UPI0014194B5D3.750e-1958.57DNA polymerase iota isoform X3 n=1 Tax=Lacerta agi... [more]
A0A8C4NGW5_EPTBU4.170e-1956.16Polymerase (DNA directed) iota n=2 Tax=Eptatretus ... [more]
A0A0N8JX03_SCLFO4.280e-1954.79UmuC domain-containing protein n=1 Tax=Scleropages... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig49996contigH-elongata_contig49996:2537..3238 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score91.3
Seed ortholog evalue2.1e-16
Seed eggNOG ortholog9371.XP_004703165.1
Preferred namePOLI
KEGG koko:K03510
KEGG Pathwayko03460,map03460
GOsGO:0000731,GO:0003674,GO:0003824,GO:0003887,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006301,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009987,GO:0010225,GO:0016604,GO:0016607,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0019985,GO:0031974,GO:0031981,GO:0032991,GO:0033554,GO:0034061,GO:0034641,GO:0034644,GO:0034645,GO:0034654,GO:0035770,GO:0036464,GO:0042276,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0070013,GO:0071214,GO:0071478,GO:0071482,GO:0071494,GO:0071704,GO:0071897,GO:0090304,GO:0104004,GO:0140097,GO:1901360,GO:1901362,GO:1901576,GO:1990904
EggNOG free text desc.DNA polymerase iota
EggNOG OGs353GV@311790,38CM1@33154,3BCX5@33208,3CV7D@33213,3J1IQ@40674,48CIW@7711,4917S@7742,COG0389@1,KOG2095@2759
EC2.7.7.7
COG Functional cat.L
Best tax levelAfrotheria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03400
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDNA-repair protein, UmuC-like
Ec32 orthologEc-17_000370.1
Exons2
Model size222
Cds size222
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930823.4968846-CDS-H-elongata_contig49996:2536..26111622930823.4968846-CDS-H-elongata_contig49996:2536..2611Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49996 2537..2611 -
1691679585.8696465-CDS-H-elongata_contig49996:2536..26111691679585.8696465-CDS-H-elongata_contig49996:2536..2611Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49996 2537..2611 -
1622930823.514798-CDS-H-elongata_contig49996:3091..32381622930823.514798-CDS-H-elongata_contig49996:3091..3238Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49996 3092..3238 -
1691679585.8813987-CDS-H-elongata_contig49996:3091..32381691679585.8813987-CDS-H-elongata_contig49996:3091..3238Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49996 3092..3238 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig49996.12222.1prot_H-elongata_contig49996.12222.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig49996 2537..3238 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig49996.12222.1

>prot_H-elongata_contig49996.12222.1 ID=prot_H-elongata_contig49996.12222.1|Name=mRNA_H-elongata_contig49996.12222.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=74bp
VEEVLNPSLRGKPIGIQQKYLMVTCNYVARHLGVRKMKSVTEARKPPLSK
RCPSLIMLDGEDLTYYREASEAIF
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mRNA from alignment at H-elongata_contig49996:2537..3238-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig49996.12222.1 ID=mRNA_H-elongata_contig49996.12222.1|Name=mRNA_H-elongata_contig49996.12222.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=702bp|location=Sequence derived from alignment at H-elongata_contig49996:2537..3238- (Himanthalia elongata Himel1 dioecious)
GTGGAAGAGGTGCTCAATCCCAGCCTTCGCGGTAAGCCGATCGGCATCCA GCAGAAGTACCTCATGGTGACGTGCAACTACGTCGCCAGACATCTTGGCG TCCGGAAGATGAAGAGTGTGACCGAGGCAAGAAAACCCCCCTTGAGCGTA GCGTACCGTGCCGTATTCTGGCCATTGCCTCGCCTGGGCTCATTGTTTCA TTGACGCCACAGCCGCATGCATGTCACGGAACCAACCGCTGATTCTATAT AAGAGTATAACCGTGGAACGTATTTCTGTTTTGGTACTATTCACATACTA AAAGGCGATAGTCATACATCTGCCGTAAAGACAAGGGAGAGTGGCACAGG TAGGACACGCTATTTATTATTTATTATATGGAGGCTTTTTTTTGCTGATA TTTCTATCCACGGCGCCTTAAGAGCGGTTTTTGTTGCCGCCCGGACTGGA ACGCGTCGAGCATCGTGAAAATATTGCCGGCGAGACAATCGTTTCACTGC ATCTGTATATATAGGGGAAAACACCCACGCGTGTACATACATAAGCTAGA AGTGATTCTGTACTGCGGTGCGTTCAGAGACTTGAAGAATCTTCGTCACG TGTTGCCGCGGGAAAGACCAGGCGAAGAAGCGCTGCCCAAGCCTGATCAT GTTGGACGGAGAAGATCTGACGTACTACCGCGAAGCCTCAGAGGCGATTT TC
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Coding sequence (CDS) from alignment at H-elongata_contig49996:2537..3238-

>mRNA_H-elongata_contig49996.12222.1 ID=mRNA_H-elongata_contig49996.12222.1|Name=mRNA_H-elongata_contig49996.12222.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=444bp|location=Sequence derived from alignment at H-elongata_contig49996:2537..3238- (Himanthalia elongata Himel1 dioecious)
GTGGAAGAGGTGCTCAATCCCAGCCTTCGCGGTAAGCCGATCGGCATCCA
GCAGAAGTACCTCATGGTGACGTGCAACTACGTCGCCAGACATCTTGGCG
TCCGGAAGATGAAGAGTGTGACCGAGGCAAGAAAACCCCCCTTGAGCGTG
GAAGAGGTGCTCAATCCCAGCCTTCGCGGTAAGCCGATCGGCATCCAGCA
GAAGTACCTCATGGTGACGTGCAACTACGTCGCCAGACATCTTGGCGTCC
GGAAGATGAAGAGTGTGACCGAGGCAAGAAAACCCCCCTTGAGCAAGCGC
TGCCCAAGCCTGATCATGTTGGACGGAGAAGATCTGACGTACTACCGCGA
AGCCTCAGAGGCGATTTTCAAGCGCTGCCCAAGCCTGATCATGTTGGACG
GAGAAGATCTGACGTACTACCGCGAAGCCTCAGAGGCGATTTTC
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