mRNA_H-elongata_contig4992.12214.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig4992.12214.1
Unique NamemRNA_H-elongata_contig4992.12214.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig4992.12214.1 vs. uniprot
Match: A0A6H5L4K7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4K7_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 1.010e-15
Identity = 115/354 (32.49%), Postives = 147/354 (41.53%), Query Frame = 2 
Query:    2 DNRVEIMARAPSLEMKRRAGARQSSWKIEQPGVIISLDDRGQRVRRSREGSRRNVAGEEDDI-GVDFGDFGVDRRI-RAGESRNKGEE----RRPVDGWGPRSVTGPVPGGWDYDGVCTGSESCTGTISSV---------------------------------ERPDGAGSCTLSSCSEEAGA--WNDADG---------------AGSVNESRAESTISASDGADEAEAEWPTELRNSIGIVTDLVVPCQTEIVTVERRAENGRNGSGSAPLRHAGRFGVSAWDSECDEPMENVDEEEREMLDAMQVFYRRGKQQLQEHADRHKRSARQRATDNRHPARTPAQQNTHR-RTQ 892
            DNR+E++  APSLE KRR   R +  +  Q     S D  G                + + + GVD G F   +R  R  E  N+ +E       VDGWGPR  TGPV GGW   G C     C   ++S                                           T SS S   GA  W  A G               +G    S A ST    +   E EA W  EL++S+G+VTDLV+PCQ            GR+G        AG  GV     E  E  E   E+EREM  A++  Y +G++QL+ HA+ H + ARQRATD    +RTP QQN +R RTQ
Sbjct:  331 DNRLEVLKLAPSLEKKRRMEGRFAVPQQHQEAPPPSPDLAGSCXXXXXXXXXXXXKEDVEAVTGVDLGCFRAQKRQQRQDEETNRKQEVVAAGAGVDGWGPRQDTGPVEGGW---GDC-----CIPAVASAVDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWEATESSTSLSGGAGDWGIASGRXXXXXXXXVCGVSESGXXXXSMAVSTDEQGEEGQE-EARWAEELKSSVGVVTDLVLPCQ------------GRDG--------AGVDGVGIAIEEVGEEGEGH-EDEREMAAALEAIYEKGREQLERHAEVHGKEARQRATDAWLASRTPQQQNDYRERTQ 654
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BLAST of mRNA_H-elongata_contig4992.12214.1 vs. uniprot
Match: D7FXG8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXG8_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 1.860e-10
Identity = 54/125 (43.20%), Postives = 72/125 (57.60%), Query Frame = 2 
Query:  521 EAEWPTELRNSIGIVTDLVVPCQTEIVTVERRAENGRNGSGSAPLRHAGRFGVSAWDSECDEPMENVDEEEREMLDAMQVFYRRGKQQLQEHADRHKRSARQRATDNRHPARTPAQQNTHR-RTQ 892
            EA W  EL++S+G+VTDLV+PCQ            GR+G        AG  GV     E  E  E   E+EREM  A++  Y +G++QL+ HA+ H + ARQRATD    +RTP QQ+ +R RTQ
Sbjct:  212 EARWAEELKSSVGVVTDLVLPCQ------------GRDG--------AGVDGVGIAIEEGGEE-EXXXEDEREMAAALEAIYEKGREQLKRHAEVHGKEARQRATDAWLASRTPQQQSDYRERTQ 315
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig4992.12214.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L4K7_9PHAE1.010e-1532.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXG8_ECTSI1.860e-1043.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig4992contigH-elongata_contig4992:6244..7966 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-07_003200.1
Exons2
Model size1544
Cds size879
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig4992.12214.1prot_H-elongata_contig4992.12214.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig4992 6263..7320 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930822.3826551-UTR-H-elongata_contig4992:6243..62621622930822.3826551-UTR-H-elongata_contig4992:6243..6262Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig4992 6244..6262 +
1691679585.3273995-UTR-H-elongata_contig4992:6243..62621691679585.3273995-UTR-H-elongata_contig4992:6243..6262Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig4992 6244..6262 +
1622930822.427247-UTR-H-elongata_contig4992:7320..79661622930822.427247-UTR-H-elongata_contig4992:7320..7966Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig4992 7321..7966 +
1691679585.3735876-UTR-H-elongata_contig4992:7320..79661691679585.3735876-UTR-H-elongata_contig4992:7320..7966Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig4992 7321..7966 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930822.4002368-CDS-H-elongata_contig4992:6262..70001622930822.4002368-CDS-H-elongata_contig4992:6262..7000Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4992 6263..7000 +
1691679585.3454168-CDS-H-elongata_contig4992:6262..70001691679585.3454168-CDS-H-elongata_contig4992:6262..7000Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4992 6263..7000 +
1622930822.413614-CDS-H-elongata_contig4992:7179..73201622930822.413614-CDS-H-elongata_contig4992:7179..7320Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4992 7180..7320 +
1691679585.3591013-CDS-H-elongata_contig4992:7179..73201691679585.3591013-CDS-H-elongata_contig4992:7179..7320Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig4992 7180..7320 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig4992.12214.1

>prot_H-elongata_contig4992.12214.1 ID=prot_H-elongata_contig4992.12214.1|Name=mRNA_H-elongata_contig4992.12214.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=293bp
MARAPSLEMKRRAGARQSSWKIEQPGVIISLDDRGQRVRRSREGSRRNVA
GEEDDIGVDFGDFGVDRRIRAGESRNKGEERRPVDGWGPRSVTGPVPGGW
DYDGVCTGSESCTGTISSVERPDGAGSCTLSSCSEEAGAWNDADGAGSVN
ESRAESTISASDGADEAEAEWPTELRNSIGIVTDLVVPCQTEIVTVERRA
ENGRNGSGSAPLRHAGRFGVSAWDSECDEPMENVDEEEREMLDAMQVFYR
RGKQQLQEHADRHKRSARQRATDNRHPARTPAQQNTHRRTQR*
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mRNA from alignment at H-elongata_contig4992:6244..7966+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig4992.12214.1 ID=mRNA_H-elongata_contig4992.12214.1|Name=mRNA_H-elongata_contig4992.12214.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1723bp|location=Sequence derived from alignment at H-elongata_contig4992:6244..7966+ (Himanthalia elongata Himel1 dioecious)
CGACAATAGGGTTGAGATTATGGCTCGTGCCCCGTCACTAGAGATGAAGC
GTCGGGCGGGAGCCAGGCAGTCTTCGTGGAAGATTGAGCAGCCCGGAGTG
ATTATTTCTCTGGATGACCGGGGCCAGCGGGTTCGGCGCTCGCGTGAGGG
GAGCCGGCGAAATGTGGCAGGGGAAGAAGATGATATCGGGGTGGATTTCG
GGGATTTTGGTGTAGACAGGCGCATTCGGGCAGGGGAGAGCAGGAACAAG
GGGGAGGAAAGAAGGCCAGTTGACGGCTGGGGGCCGCGGAGCGTCACCGG
TCCTGTGCCGGGTGGTTGGGACTATGACGGCGTGTGCACTGGCAGTGAAA
GCTGCACGGGCACCATCTCTAGTGTAGAGCGACCTGACGGTGCAGGATCG
TGCACGCTTTCGTCATGCTCAGAGGAGGCGGGAGCATGGAATGACGCAGA
CGGCGCGGGAAGCGTGAACGAGAGCAGGGCGGAAAGCACGATTAGCGCGA
GCGACGGCGCGGACGAGGCAGAAGCGGAATGGCCGACCGAACTGCGAAAC
AGCATCGGGATCGTGACGGATCTCGTTGTGCCTTGCCAGACGGAGATTGT
CACTGTCGAGAGGCGCGCGGAGAACGGGAGGAATGGCTCTGGCTCTGCAC
CTTTGAGGCACGCGGGAAGGTTCGGAGTATCGGCCTGGGACTCGGAGTGT
GATGAGCCGATGGAGAATGTTGATGAAGAAGAGCGGGAGATGCTCGATGC
AATGCAGGTGAGTTTGTTTTTTGCTGCCAACGTATCAGTATGTATCAAGA
GGGGATTGAATCACGCGCAGGAGATCTTGGAGGGATTGTGTCTGTCGATT
CAAGCCTCTTAAATCTTAAATCCAACTTCTCCGGCCGACATCCTAAACTT
CCGTGCAACGACGTCTCATGTACATCTCCTTGGCAGGTTTTTTACAGGCG
GGGTAAGCAGCAGCTTCAGGAGCACGCGGATCGCCACAAGCGAAGCGCGA
GGCAACGAGCCACGGACAACCGGCACCCGGCACGTACCCCAGCGCAGCAG
AACACCCACCGACGTACGCAGCGATGACCTCAGGTTTGAGCGAATGAAAA
GGAGCTTGATATGCGGGTCGGGGGCGTCCGGGAGCATCTATTTGCTCTGC
TCCCCTTTTTGACCGTCTACTTTAGGACCGTCTGTCGCGTCCATGCCTCC
TGGCGCTAGCGGCGTCCCCGATCCCCTCGAAATGCTTACCGAGGCGCGTC
CTGGGCCTTCCTCACTAAATGATGGAGGGGGAAATGTTGGAGAGCTATTG
AGGATATTGGAACTGAGCTACGAGGGAATGCCGAGGAAAGGGGTGTGGCT
GGTGTGCTGGATCAGGCTGTGGTGCATTCTAGACGCGGAGTATCCCACTG
CCAAGCCTACCAGGAAAACATTTCAAGGAACGGTCCGAGGAACAGTTCAA
AGGTGGGAAGTGGCGAATTTTTTTAGACGTTGTGAACAACCGTTTTGCTT
TTCCCCTCGTTGGTCCATGAAATTTGGGAAGGCTTGTTGCGAAAGCATCG
TTAAACCTCCAGCGTACGCGTTGAAAATGCGGGAAAACGCCTCTCTCTCG
ATCGTGTTGGGTGTCGTCGAAACAAATTTCCGGGAATATTTTCTGTTTTG
TCTCTCATCGTTTACCTTTGATTTCGACGTTCGTAATTTGGGTGAATCGA
TATCACATACAGTAGAAGAGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig4992:6244..7966+

>mRNA_H-elongata_contig4992.12214.1 ID=mRNA_H-elongata_contig4992.12214.1|Name=mRNA_H-elongata_contig4992.12214.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1758bp|location=Sequence derived from alignment at H-elongata_contig4992:6244..7966+ (Himanthalia elongata Himel1 dioecious)
ATGGCTCGTGCCCCGTCACTAGAGATGAAGCGTCGGGCGGGAGCCAGGCA
GTCTTCGTGGAAGATTGAGCAGCCCGGAGTGATTATTTCTCTGGATGACC
GGGGCCAGCGGGTTCGGCGCTCGCGTGAGGGGAGCCGGCGAAATGTGGCA
GGGGAAGAAGATGATATCGGGGTGGATTTCGGGGATTTTGGTGTAGACAG
GCGCATTCGGGCAGGGGAGAGCAGGAACAAGGGGGAGGAAAGAAGGCCAG
TTGACGGCTGGGGGCCGCGGAGCGTCACCGGTCCTGTGCCGGGTGGTTGG
GACTATGACGGCGTGTGCACTGGCAGTGAAAGCTGCACGGGCACCATCTC
TAGTGTAGAGCGACCTGACGGTGCAGGATCGTGCACGCTTTCGTCATGCT
CAGAGGAGGCGGGAGCATGGAATGACGCAGACGGCGCGGGAAGCGTGAAC
GAGAGCAGGGCGGAAAGCACGATTAGCGCGAGCGACGGCGCGGACGAGGC
AGAAGCGGAATGGCCGACCGAACTGCGAAACAGCATCGGGATCGTGACGG
ATCTCGTTGTGCCTTGCCAGACGGAGATTGTCACTGTCGAGAGGCGCGCG
GAGAACGGGAGGAATGGCTCTGGCTCTGCACCTTTGAGGCACGCGGGAAG
GTTCGGAGTATCGGCCTGGGACTCGGAGTGTGATGAGCCGATGGAGAATG
TTGATGAAGAAGAGCGGGAGATGCTCGATGCAATGCAGATGGCTCGTGCC
CCGTCACTAGAGATGAAGCGTCGGGCGGGAGCCAGGCAGTCTTCGTGGAA
GATTGAGCAGCCCGGAGTGATTATTTCTCTGGATGACCGGGGCCAGCGGG
TTCGGCGCTCGCGTGAGGGGAGCCGGCGAAATGTGGCAGGGGAAGAAGAT
GATATCGGGGTGGATTTCGGGGATTTTGGTGTAGACAGGCGCATTCGGGC
AGGGGAGAGCAGGAACAAGGGGGAGGAAAGAAGGCCAGTTGACGGCTGGG
GGCCGCGGAGCGTCACCGGTCCTGTGCCGGGTGGTTGGGACTATGACGGC
GTGTGCACTGGCAGTGAAAGCTGCACGGGCACCATCTCTAGTGTAGAGCG
ACCTGACGGTGCAGGATCGTGCACGCTTTCGTCATGCTCAGAGGAGGCGG
GAGCATGGAATGACGCAGACGGCGCGGGAAGCGTGAACGAGAGCAGGGCG
GAAAGCACGATTAGCGCGAGCGACGGCGCGGACGAGGCAGAAGCGGAATG
GCCGACCGAACTGCGAAACAGCATCGGGATCGTGACGGATCTCGTTGTGC
CTTGCCAGACGGAGATTGTCACTGTCGAGAGGCGCGCGGAGAACGGGAGG
AATGGCTCTGGCTCTGCACCTTTGAGGCACGCGGGAAGGTTCGGAGTATC
GGCCTGGGACTCGGAGTGTGATGAGCCGATGGAGAATGTTGATGAAGAAG
AGCGGGAGATGCTCGATGCAATGCAGGTTTTTTACAGGCGGGGTAAGCAG
CAGCTTCAGGAGCACGCGGATCGCCACAAGCGAAGCGCGAGGCAACGAGC
CACGGACAACCGGCACCCGGCACGTACCCCAGCGCAGCAGAACACCCACC
GACGTACGCAGCGATGAGTTTTTTACAGGCGGGGTAAGCAGCAGCTTCAG
GAGCACGCGGATCGCCACAAGCGAAGCGCGAGGCAACGAGCCACGGACAA
CCGGCACCCGGCACGTACCCCAGCGCAGCAGAACACCCACCGACGTACGC
AGCGATGA
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