mRNA_H-elongata_contig49907.12213.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig49907.12213.1 vs. uniprot
Match: D7FMP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMP1_ECTSI) HSP 1 Score: 101 bits (251), Expect = 3.290e-24 Identity = 51/64 (79.69%), Postives = 59/64 (92.19%), Query Frame = 1
Query: 1 RNQAKELPERSTCALVAAIFELGLKHSSPKVVLMKLMPPKADSLTTEHIKSRLQKYRLHSHRSK 192
R +AKELP++++ + AAIFELGLKHSSPKV LMKLMPPKA+SLTTEHIKSRLQKYRLH+HRSK
Sbjct: 8 RARAKELPDKASASFAAAIFELGLKHSSPKV-LMKLMPPKANSLTTEHIKSRLQKYRLHAHRSK 70
BLAST of mRNA_H-elongata_contig49907.12213.1 vs. uniprot
Match: A0A835Z7B0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7B0_9STRA) HSP 1 Score: 101 bits (252), Expect = 5.840e-23 Identity = 60/101 (59.41%), Postives = 68/101 (67.33%), Query Frame = 1
Query: 19 LPERSTCALVAAIFELGLKHSSPKVVLMKLMPPKADSLTTEHIKSRLQKYRLHSHRSKDEFLEFFNLRLKAKFKEFQSKEGWRNISPRHGQEDDDDESEDE 321
LP+ A+FELGL+HSSPKV LMKLMP + LTTEHIKS LQKYRLH RSKDEFLEFF LRLK KF F + WRN+ P ED +E +E
Sbjct: 128 LPDALESRFATAVFELGLRHSSPKV-LMKLMP-NTEKLTTEHIKSHLQKYRLHYARSKDEFLEFFELRLKEKFGTFCAGHMWRNLPPHLADEDAAEEDMEE 226
BLAST of mRNA_H-elongata_contig49907.12213.1 vs. uniprot
Match: A0A7S4D6B3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D6B3_HETAK) HSP 1 Score: 93.6 bits (231), Expect = 2.490e-20 Identity = 50/84 (59.52%), Postives = 66/84 (78.57%), Query Frame = 1
Query: 19 LPERSTCALVAAIFELGLKHSSPKVVLMKLMPPKADSLTTEHIKSRLQKYRLHSHRSKDEFLEFFNLRLKAKFKEFQSKEGWRN 270
LP+ VA++FE+GL++SSPKV LM+LMP +SLTTEHIKS LQKYRLH RSK+EFL++++ LK F++F S+EGWRN
Sbjct: 30 LPKEMEADFVASVFEIGLRNSSPKV-LMQLMPL-TNSLTTEHIKSHLQKYRLHYTRSKEEFLQYYDSHLKRDFEDFVSQEGWRN 111
BLAST of mRNA_H-elongata_contig49907.12213.1 vs. uniprot
Match: A0A7S3HM56_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HM56_9STRA) HSP 1 Score: 89.4 bits (220), Expect = 1.610e-18 Identity = 46/85 (54.12%), Postives = 64/85 (75.29%), Query Frame = 1
Query: 22 PERSTCALVAAIFELGLKHSSPKVVLMKLMPPKADSLTTEHIKSRLQKYRLHSHRSKDEFLEFFNLRLKAKFKEFQSKEGWRNIS 276
P+ AAIFELGLKHSSPK+ LM LMP + + L+TEHIKS LQKYR+H RSKDEF +F+N +K F+++++ EGW++++
Sbjct: 63 PKHLESNFAAAIFELGLKHSSPKI-LMPLMPNETN-LSTEHIKSHLQKYRIHRQRSKDEFFDFYNNYMKDAFQQWENAEGWKHLA 145
BLAST of mRNA_H-elongata_contig49907.12213.1 vs. uniprot
Match: A0A7R9YFR2_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YFR2_9STRA) HSP 1 Score: 86.3 bits (212), Expect = 1.500e-17 Identity = 49/94 (52.13%), Postives = 62/94 (65.96%), Query Frame = 1
Query: 13 KELPERSTCALVAAIFELGLKHSSPKVVLMKLMPPKADSLTTEHIKSRLQKYRLHSHRSKDEFLEFFNLRLKAKFKEFQSKEGWRNISPRHGQE 294
+ +P+ + V A+FE+GL +SPKV LM MP + D LTTEHIKS LQKYRLH RSK+EF+E +N LKA F+ F K+ WR S G E
Sbjct: 59 QSIPDNFEASFVNAVFEIGLSRASPKV-LMNFMP-RVDMLTTEHIKSHLQKYRLHHGRSKNEFMEHYNQCLKADFRAFCDKQSWRYPSTSQGGE 150
BLAST of mRNA_H-elongata_contig49907.12213.1 vs. uniprot
Match: A0A6S6I6H3_9STRA (Phosphorus starvation response like 1 n=1 Tax=Nannochloropsis oceanica TaxID=145522 RepID=A0A6S6I6H3_9STRA) HSP 1 Score: 80.5 bits (197), Expect = 1.880e-14 Identity = 45/81 (55.56%), Postives = 57/81 (70.37%), Query Frame = 1
Query: 22 PERSTCALVAAIFELGLKHSSPKVVLMKLMPPKADSLTTEHIKSRLQKYRLHSHRSKDEFLEFFNLRLKAKFKEFQSKEGW 264
P + V A+F+LGLK SSPKV LM LMP ++LTTEHIKS LQKYRLH +RSKDEF+E+FN ++ F F ++ W
Sbjct: 350 PAQHETDFVGAVFKLGLKCSSPKV-LMDLMPM-TETLTTEHIKSHLQKYRLHGNRSKDEFVEYFNGYMRGPFASFCARREW 428
BLAST of mRNA_H-elongata_contig49907.12213.1 vs. uniprot
Match: A0A482S6Z8_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S6Z8_9ARCH) HSP 1 Score: 77.8 bits (190), Expect = 4.150e-14 Identity = 40/83 (48.19%), Postives = 58/83 (69.88%), Query Frame = 1
Query: 16 ELPERSTCALVAAIFELGLKHSSPKVVLMKLMPPKADSLTTEHIKSRLQKYRLHSHRSKDEFLEFFNLRLKAKFKEFQSKEGW 264
+ P++ ++AIFELGLK++SPK++L L+PP + L TEHIKS LQKYR+H RSK+EF+ F+ +K F ++ K GW
Sbjct: 75 QFPKQYEDQFLSAIFELGLKNASPKLIL-PLLPPTTE-LNTEHIKSHLQKYRVHKERSKEEFVAFYTEHIKHTFDDWDEKRGW 155
BLAST of mRNA_H-elongata_contig49907.12213.1 vs. uniprot
Match: A0A4D9DAJ4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DAJ4_9STRA) HSP 1 Score: 77.4 bits (189), Expect = 1.920e-13 Identity = 43/81 (53.09%), Postives = 56/81 (69.14%), Query Frame = 1
Query: 22 PERSTCALVAAIFELGLKHSSPKVVLMKLMPPKADSLTTEHIKSRLQKYRLHSHRSKDEFLEFFNLRLKAKFKEFQSKEGW 264
P + V A+F+LGL+ SSPKV LM LMP D+LTTEHIKS LQKYRLH RSK+EF+E++N ++ F F ++ W
Sbjct: 286 PPQHETDFVGAVFKLGLQCSSPKV-LMDLMPM-TDTLTTEHIKSHLQKYRLHGQRSKEEFVEYYNGYMRGPFASFCARREW 364
BLAST of mRNA_H-elongata_contig49907.12213.1 vs. uniprot
Match: W7TSM2_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TSM2_9STRA) HSP 1 Score: 77.4 bits (189), Expect = 2.170e-13 Identity = 43/81 (53.09%), Postives = 56/81 (69.14%), Query Frame = 1
Query: 22 PERSTCALVAAIFELGLKHSSPKVVLMKLMPPKADSLTTEHIKSRLQKYRLHSHRSKDEFLEFFNLRLKAKFKEFQSKEGW 264
P + V A+F+LGL+ SSPKV LM LMP D+LTTEHIKS LQKYRLH RSK+EF+E++N ++ F F ++ W
Sbjct: 315 PPQHETDFVGAVFKLGLQCSSPKV-LMDLMPM-TDTLTTEHIKSHLQKYRLHGQRSKEEFVEYYNGYMRGPFASFCARREW 393
BLAST of mRNA_H-elongata_contig49907.12213.1 vs. uniprot
Match: A0A6S6I2Y2_9STRA (Phosphorus starvation response like 2 n=1 Tax=Nannochloropsis oceanica TaxID=145522 RepID=A0A6S6I2Y2_9STRA) HSP 1 Score: 75.1 bits (183), Expect = 1.460e-12 Identity = 36/89 (40.45%), Postives = 56/89 (62.92%), Query Frame = 1
Query: 10 AKELPERSTCALVAAIFELGLKHSSPKVVLMKLMPPKADSLTTEHIKSRLQKYRLHSHRSKDEFLEFFNLRLKAKFKEFQSKEGWRNIS 276
A L + A+F++GLK SSP+V++ + P ++TTEH+KS LQKYRLH RS +EF+ F+ ++ F FQ++ GW ++S
Sbjct: 178 ALNLTSKQEEEFAGAVFQIGLKRSSPRVLMDHM--PDTSTITTEHVKSHLQKYRLHHQRSNEEFMTFYREHIREPFASFQARRGWLDVS 264 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig49907.12213.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig49907.12213.1 >prot_H-elongata_contig49907.12213.1 ID=prot_H-elongata_contig49907.12213.1|Name=mRNA_H-elongata_contig49907.12213.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=175bp RNQAKELPERSTCALVAAIFELGLKHSSPKVVLMKLMPPKADSLTTEHIKback to top mRNA from alignment at H-elongata_contig49907:460..2241- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig49907.12213.1 ID=mRNA_H-elongata_contig49907.12213.1|Name=mRNA_H-elongata_contig49907.12213.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1782bp|location=Sequence derived from alignment at H-elongata_contig49907:460..2241- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig49907:460..2241- >mRNA_H-elongata_contig49907.12213.1 ID=mRNA_H-elongata_contig49907.12213.1|Name=mRNA_H-elongata_contig49907.12213.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1050bp|location=Sequence derived from alignment at H-elongata_contig49907:460..2241- (Himanthalia elongata Himel1 dioecious)back to top |