mRNA_H-elongata_contig49796.12196.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig49796.12196.1
Unique NamemRNA_H-elongata_contig49796.12196.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig49796.12196.1 vs. uniprot
Match: D8LSC3_ECTSI (Conserved oligomeric Golgi complex subunit 6 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSC3_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 9.570e-15
Identity = 40/51 (78.43%), Postives = 47/51 (92.16%), Query Frame = 1 
Query:    1 ELLEQLSQHQEAAYERLYRWVQERCQSLEEETPAADVTLQ--VKRIRIQPV 147
            ELLEQLS+HQEAAYERLYRWVQ+RCQ+LEEETPAADVTLQ  V+ +R +P+
Sbjct:  206 ELLEQLSKHQEAAYERLYRWVQDRCQTLEEETPAADVTLQAAVRCLRDRPL 256
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BLAST of mRNA_H-elongata_contig49796.12196.1 vs. uniprot
Match: A0A6H5LBT5_9PHAE (Conserved oligomeric Golgi complex subunit 6 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBT5_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 3.290e-12
Identity = 32/35 (91.43%), Postives = 35/35 (100.00%), Query Frame = 1 
Query:   25 HQEAAYERLYRWVQERCQSLEEETPAADVTLQVKR 129
            HQEAAYERLYRWVQ+RCQ+LEEETPAADVTLQV+R
Sbjct:  212 HQEAAYERLYRWVQDRCQTLEEETPAADVTLQVRR 246
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig49796.12196.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LSC3_ECTSI9.570e-1578.43Conserved oligomeric Golgi complex subunit 6 n=1 T... [more]
A0A6H5LBT5_9PHAE3.290e-1291.43Conserved oligomeric Golgi complex subunit 6 n=1 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig49796contigH-elongata_contig49796:3362..3508 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.9
Seed ortholog evalue6e-12
Seed eggNOG ortholog2880.D8LSC3
Preferred nameCOG6
KEGG koko:K20293
GOsGO:0000139,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005802,GO:0006810,GO:0006886,GO:0006888,GO:0006891,GO:0008104,GO:0008150,GO:0008152,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0017119,GO:0031090,GO:0031984,GO:0032258,GO:0032588,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048193,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061919,GO:0070085,GO:0070727,GO:0071702,GO:0071705,GO:0072665,GO:0098588,GO:0098791,GO:0099023
EggNOG free text desc.intra-Golgi vesicle-mediated transport
EggNOG OGsKOG3758@1,KOG3758@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size147
Cds size147
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930820.4253156-CDS-H-elongata_contig49796:3361..35081622930820.4253156-CDS-H-elongata_contig49796:3361..3508Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49796 3362..3508 +
1691679584.4148264-CDS-H-elongata_contig49796:3361..35081691679584.4148264-CDS-H-elongata_contig49796:3361..3508Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49796 3362..3508 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig49796.12196.1prot_H-elongata_contig49796.12196.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig49796 3362..3508 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig49796.12196.1

>prot_H-elongata_contig49796.12196.1 ID=prot_H-elongata_contig49796.12196.1|Name=mRNA_H-elongata_contig49796.12196.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=49bp
ELLEQLSQHQEAAYERLYRWVQERCQSLEEETPAADVTLQVKRIRIQPV
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mRNA from alignment at H-elongata_contig49796:3362..3508+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig49796.12196.1 ID=mRNA_H-elongata_contig49796.12196.1|Name=mRNA_H-elongata_contig49796.12196.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=147bp|location=Sequence derived from alignment at H-elongata_contig49796:3362..3508+ (Himanthalia elongata Himel1 dioecious)
GAACTGCTGGAGCAGCTGAGCCAGCACCAAGAGGCAGCGTACGAGAGGCT
GTACCGCTGGGTGCAGGAACGCTGCCAATCGCTCGAGGAGGAGACGCCCG
CGGCGGATGTGACGCTCCAGGTGAAAAGAATCCGCATCCAACCTGTC
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Coding sequence (CDS) from alignment at H-elongata_contig49796:3362..3508+

>mRNA_H-elongata_contig49796.12196.1 ID=mRNA_H-elongata_contig49796.12196.1|Name=mRNA_H-elongata_contig49796.12196.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=294bp|location=Sequence derived from alignment at H-elongata_contig49796:3362..3508+ (Himanthalia elongata Himel1 dioecious)
GAACTGCTGGAGCAGCTGAGCCAGCACCAAGAGGCAGCGTACGAGAGGCT
GTACCGCTGGGTGCAGGAACGCTGCCAATCGCTCGAGGAGGAGACGCCCG
CGGCGGATGTGACGCTCCAGGTGAAAAGAATCCGCATCCAACCTGTCGAA
CTGCTGGAGCAGCTGAGCCAGCACCAAGAGGCAGCGTACGAGAGGCTGTA
CCGCTGGGTGCAGGAACGCTGCCAATCGCTCGAGGAGGAGACGCCCGCGG
CGGATGTGACGCTCCAGGTGAAAAGAATCCGCATCCAACCTGTC
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