mRNA_H-elongata_contig49774.12191.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig49774.12191.1
Unique NamemRNA_H-elongata_contig49774.12191.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig49774.12191.1 vs. uniprot
Match: D8LLA6_ECTSI (Phenylalanine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLA6_ECTSI)

HSP 1 Score: 197 bits (501), Expect = 7.420e-59
Identity = 95/105 (90.48%), Postives = 95/105 (90.48%), Query Frame = 1 
Query:   16 TQIRFKPAYNPYTEPSMEIFGYHTDLKKWTEIGNSGMFRPEMLLPMGLPKARASRNALGDVRVIAWGLSLERPTMIKYGITNIRELFGHKADLNRTKTAPVCRFD 330
            TQIRFKPAYNPYTEPSMEIFGYH DLKKWTEIGNSGMFRPEMLLPMGLPK         DVRVIAWGLSLERPTMIKYGITNIRELFGHKADLNRTKTAPVCRFD
Sbjct:  410 TQIRFKPAYNPYTEPSMEIFGYHPDLKKWTEIGNSGMFRPEMLLPMGLPK---------DVRVIAWGLSLERPTMIKYGITNIRELFGHKADLNRTKTAPVCRFD 505
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BLAST of mRNA_H-elongata_contig49774.12191.1 vs. uniprot
Match: W7T7M1_9STRA (Phenylalanyl-trna synthetase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T7M1_9STRA)

HSP 1 Score: 172 bits (437), Expect = 3.580e-53
Identity = 81/104 (77.88%), Postives = 89/104 (85.58%), Query Frame = 1 
Query:   16 TQIRFKPAYNPYTEPSMEIFGYHTDLKKWTEIGNSGMFRPEMLLPMGLPKARASRNALGDVRVIAWGLSLERPTMIKYGITNIRELFGHKADLNRTKTAPVCRF 327
            T ++FKPAYNPYTEPSMEIFGYH DLKKWTEIGNSGMFRPEML PMGLP+         DVRVIAWGLSLERPTMIKY I+NIRELFGHKA L+RT+ AP+C+F
Sbjct:   68 TDLKFKPAYNPYTEPSMEIFGYHPDLKKWTEIGNSGMFRPEMLRPMGLPE---------DVRVIAWGLSLERPTMIKYRISNIRELFGHKAALDRTRAAPICQF 162
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BLAST of mRNA_H-elongata_contig49774.12191.1 vs. uniprot
Match: A0A835YKG3_9STRA (Phenylalanine--tRNA ligase n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKG3_9STRA)

HSP 1 Score: 182 bits (462), Expect = 4.150e-53
Identity = 86/105 (81.90%), Postives = 91/105 (86.67%), Query Frame = 1 
Query:   16 TQIRFKPAYNPYTEPSMEIFGYHTDLKKWTEIGNSGMFRPEMLLPMGLPKARASRNALGDVRVIAWGLSLERPTMIKYGITNIRELFGHKADLNRTKTAPVCRFD 330
            TQ+RFKPAYNPYTEPSMEIFGYH DLK+WTEIGNSGMFRPEML PMGLP+         DVRVIAWGLSLERPTMIKY I+NIRELFGHKADL RTK AP+CRFD
Sbjct:  407 TQVRFKPAYNPYTEPSMEIFGYHPDLKRWTEIGNSGMFRPEMLRPMGLPE---------DVRVIAWGLSLERPTMIKYRISNIRELFGHKADLGRTKRAPICRFD 502
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BLAST of mRNA_H-elongata_contig49774.12191.1 vs. uniprot
Match: A0A7S2Y5I1_9STRA (Phenylalanine--tRNA ligase n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y5I1_9STRA)

HSP 1 Score: 174 bits (441), Expect = 1.120e-52
Identity = 81/105 (77.14%), Postives = 90/105 (85.71%), Query Frame = 1 
Query:   16 TQIRFKPAYNPYTEPSMEIFGYHTDLKKWTEIGNSGMFRPEMLLPMGLPKARASRNALGDVRVIAWGLSLERPTMIKYGITNIRELFGHKADLNRTKTAPVCRFD 330
            TQ+RFKPA+NPYTEPSMEIFGYH DLKKWTEIGNSGMFRPEML PMGLP+         +VRVIAWGLSLERPTMIKY I NIR+LFGHK ++ RT+TAP+CRFD
Sbjct:  144 TQLRFKPAFNPYTEPSMEIFGYHPDLKKWTEIGNSGMFRPEMLQPMGLPE---------NVRVIAWGLSLERPTMIKYRIKNIRDLFGHKVEMARTRTAPICRFD 239
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BLAST of mRNA_H-elongata_contig49774.12191.1 vs. uniprot
Match: A0A7S4J9M2_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J9M2_9STRA)

HSP 1 Score: 168 bits (426), Expect = 2.480e-52
Identity = 77/104 (74.04%), Postives = 89/104 (85.58%), Query Frame = 1 
Query:   19 QIRFKPAYNPYTEPSMEIFGYHTDLKKWTEIGNSGMFRPEMLLPMGLPKARASRNALGDVRVIAWGLSLERPTMIKYGITNIRELFGHKADLNRTKTAPVCRFD 330
            ++R+KPA+NPYTEPSMEIFGYH DLKKWTEIGNSGMFRPEML PMGLP+         +VRVIAWGLSLERPTMIKY I NIR+LFGHK ++ RT+TAP+CRF+
Sbjct:    4 KLRYKPAFNPYTEPSMEIFGYHPDLKKWTEIGNSGMFRPEMLAPMGLPE---------NVRVIAWGLSLERPTMIKYRIKNIRDLFGHKVEMARTRTAPICRFE 98
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BLAST of mRNA_H-elongata_contig49774.12191.1 vs. uniprot
Match: K0TQQ6_THAOC (Phenylalanine--tRNA ligase (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TQQ6_THAOC)

HSP 1 Score: 171 bits (434), Expect = 1.210e-51
Identity = 80/105 (76.19%), Postives = 87/105 (82.86%), Query Frame = 1 
Query:   16 TQIRFKPAYNPYTEPSMEIFGYHTDLKKWTEIGNSGMFRPEMLLPMGLPKARASRNALGDVRVIAWGLSLERPTMIKYGITNIRELFGHKADLNRTKTAPVCRFD 330
            TQ+RFKPA+NPYTEPSME+FGYH DLKKWTEIGNSGMFRPEML PMGLP+         +VRVIAWGLSLERPTMIKY I NIR LFGHK DL  T+ AP+CRFD
Sbjct:  133 TQLRFKPAFNPYTEPSMEVFGYHPDLKKWTEIGNSGMFRPEMLAPMGLPE---------NVRVIAWGLSLERPTMIKYRIDNIRNLFGHKVDLAMTRNAPICRFD 228
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BLAST of mRNA_H-elongata_contig49774.12191.1 vs. uniprot
Match: A0A7S2XV42_9STRA (Phenylalanine--tRNA ligase n=2 Tax=Bacillariophyta TaxID=2836 RepID=A0A7S2XV42_9STRA)

HSP 1 Score: 174 bits (440), Expect = 1.820e-51
Identity = 81/105 (77.14%), Postives = 90/105 (85.71%), Query Frame = 1 
Query:   16 TQIRFKPAYNPYTEPSMEIFGYHTDLKKWTEIGNSGMFRPEMLLPMGLPKARASRNALGDVRVIAWGLSLERPTMIKYGITNIRELFGHKADLNRTKTAPVCRFD 330
            TQ+RFKPA+NPYTEPSMEIFGYH DLK+WTEIGNSGMFRPEML PMGLP+         +VRVIAWGLSLERPTMIKY I NIR+LFGHK D+ RT+TAPVCR+D
Sbjct:  236 TQLRFKPAFNPYTEPSMEIFGYHPDLKQWTEIGNSGMFRPEMLAPMGLPE---------NVRVIAWGLSLERPTMIKYRIKNIRDLFGHKVDMARTRTAPVCRYD 331
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BLAST of mRNA_H-elongata_contig49774.12191.1 vs. uniprot
Match: A0A6V2DUX8_9STRA (Phenylalanine--tRNA ligase n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2DUX8_9STRA)

HSP 1 Score: 176 bits (445), Expect = 1.370e-50
Identity = 83/105 (79.05%), Postives = 89/105 (84.76%), Query Frame = 1 
Query:   16 TQIRFKPAYNPYTEPSMEIFGYHTDLKKWTEIGNSGMFRPEMLLPMGLPKARASRNALGDVRVIAWGLSLERPTMIKYGITNIRELFGHKADLNRTKTAPVCRFD 330
            TQ+RFKPA+NPYTEPSMEIFGYH DLKKWTEIGNSGMFRPEML PMGLP+         +VRVIAWGLSLERPTMIKY I NIR LFGHK D+ RT+TAPVCRFD
Sbjct:  407 TQLRFKPAFNPYTEPSMEIFGYHPDLKKWTEIGNSGMFRPEMLAPMGLPE---------NVRVIAWGLSLERPTMIKYRINNIRALFGHKVDMARTRTAPVCRFD 502
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BLAST of mRNA_H-elongata_contig49774.12191.1 vs. uniprot
Match: A0A7S2VEP6_9STRA (Phenylalanine--tRNA ligase n=2 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VEP6_9STRA)

HSP 1 Score: 174 bits (441), Expect = 5.900e-50
Identity = 81/105 (77.14%), Postives = 90/105 (85.71%), Query Frame = 1 
Query:   16 TQIRFKPAYNPYTEPSMEIFGYHTDLKKWTEIGNSGMFRPEMLLPMGLPKARASRNALGDVRVIAWGLSLERPTMIKYGITNIRELFGHKADLNRTKTAPVCRFD 330
            TQ+RFKPA+NPYTEPSMEIFGYH DLKKWTEIGNSGMFRPEML PMGLP+         +VRVIAWGLSLERPTMIKY I NIR+LFGHK ++ RT+TAP+CRFD
Sbjct:  410 TQLRFKPAFNPYTEPSMEIFGYHPDLKKWTEIGNSGMFRPEMLQPMGLPE---------NVRVIAWGLSLERPTMIKYRIKNIRDLFGHKVEMARTRTAPICRFD 505
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BLAST of mRNA_H-elongata_contig49774.12191.1 vs. uniprot
Match: A0A1Z5KBW2_FISSO (Phenylalanine--tRNA ligase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KBW2_FISSO)

HSP 1 Score: 174 bits (440), Expect = 7.580e-50
Identity = 82/105 (78.10%), Postives = 89/105 (84.76%), Query Frame = 1 
Query:   16 TQIRFKPAYNPYTEPSMEIFGYHTDLKKWTEIGNSGMFRPEMLLPMGLPKARASRNALGDVRVIAWGLSLERPTMIKYGITNIRELFGHKADLNRTKTAPVCRFD 330
            T++RFKPA+NPYTEPSMEIFGYH DLKKWTEIGNSGMFRPEML PM LP+         +VRVIAWGLSLERPTMIKY I NIRELFGHK D+ RT+TAPVCRFD
Sbjct:  408 TKLRFKPAFNPYTEPSMEIFGYHPDLKKWTEIGNSGMFRPEMLAPMELPE---------NVRVIAWGLSLERPTMIKYRIKNIRELFGHKVDMGRTRTAPVCRFD 503
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig49774.12191.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLA6_ECTSI7.420e-5990.48Phenylalanine--tRNA ligase n=2 Tax=Ectocarpus TaxI... [more]
W7T7M1_9STRA3.580e-5377.88Phenylalanyl-trna synthetase n=1 Tax=Nannochlorops... [more]
A0A835YKG3_9STRA4.150e-5381.90Phenylalanine--tRNA ligase n=2 Tax=Tribonema minus... [more]
A0A7S2Y5I1_9STRA1.120e-5277.14Phenylalanine--tRNA ligase n=1 Tax=Amphiprora palu... [more]
A0A7S4J9M2_9STRA2.480e-5274.04Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
K0TQQ6_THAOC1.210e-5176.19Phenylalanine--tRNA ligase (Fragment) n=1 Tax=Thal... [more]
A0A7S2XV42_9STRA1.820e-5177.14Phenylalanine--tRNA ligase n=2 Tax=Bacillariophyta... [more]
A0A6V2DUX8_9STRA1.370e-5079.05Phenylalanine--tRNA ligase n=1 Tax=Ditylum brightw... [more]
A0A7S2VEP6_9STRA5.900e-5077.14Phenylalanine--tRNA ligase n=2 Tax=Amphiprora palu... [more]
A0A1Z5KBW2_FISSO7.580e-5078.10Phenylalanine--tRNA ligase n=2 Tax=Fistulifera sol... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig49774contigH-elongata_contig49774:1699..2584 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score197.6
Seed ortholog evalue3.1e-48
Seed eggNOG ortholog2880.D8LLA6
Preferred nameFARSA
KEGG rclassRC00055,RC00523
KEGG koko:K01889
KEGG ReactionR03660
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
GOsGO:0000122,GO:0002161,GO:0002181,GO:0003674,GO:0003824,GO:0004812,GO:0004826,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006355,GO:0006357,GO:0006399,GO:0006412,GO:0006418,GO:0006432,GO:0006450,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009328,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016070,GO:0016787,GO:0016788,GO:0016874,GO:0016875,GO:0019219,GO:0019222,GO:0019538,GO:0019752,GO:0022607,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0045892,GO:0045934,GO:0046483,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051259,GO:0051262,GO:0051290,GO:0051291,GO:0052689,GO:0060255,GO:0065003,GO:0065007,GO:0065008,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0106074,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.phenylalanyl-tRNA aminoacylation
EggNOG OGsCOG0016@1,KOG2784@2759
EC6.1.1.20
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Hectar predicted targeting categoryother localisation
Exons2
Model size333
Cds size333
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930820.016664-CDS-H-elongata_contig49774:1698..18901622930820.016664-CDS-H-elongata_contig49774:1698..1890Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49774 1699..1890 +
1691679584.2273536-CDS-H-elongata_contig49774:1698..18901691679584.2273536-CDS-H-elongata_contig49774:1698..1890Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49774 1699..1890 +
1622930820.0342014-CDS-H-elongata_contig49774:2443..25841622930820.0342014-CDS-H-elongata_contig49774:2443..2584Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49774 2444..2584 +
1691679584.2384996-CDS-H-elongata_contig49774:2443..25841691679584.2384996-CDS-H-elongata_contig49774:2443..2584Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig49774 2444..2584 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig49774.12191.1prot_H-elongata_contig49774.12191.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig49774 1699..2584 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig49774.12191.1

>prot_H-elongata_contig49774.12191.1 ID=prot_H-elongata_contig49774.12191.1|Name=mRNA_H-elongata_contig49774.12191.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=111bp
MVSYGTQIRFKPAYNPYTEPSMEIFGYHTDLKKWTEIGNSGMFRPEMLLP
MGLPKARASRNALGDVRVIAWGLSLERPTMIKYGITNIRELFGHKADLNR
TKTAPVCRFD*
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mRNA from alignment at H-elongata_contig49774:1699..2584+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig49774.12191.1 ID=mRNA_H-elongata_contig49774.12191.1|Name=mRNA_H-elongata_contig49774.12191.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=886bp|location=Sequence derived from alignment at H-elongata_contig49774:1699..2584+ (Himanthalia elongata Himel1 dioecious)
ATGGTATCTTATGGTACGCAGATTCGCTTCAAGCCGGCGTATAATCCCTA
CACGGAGCCCTCGATGGAAATCTTCGGGTACCACACCGACCTCAAGAAGT
GGACGGAGATCGGCAACAGCGGCATGTTCCGCCCGGAGATGCTCCTGCCG
ATGGGTCTACCGAAGGCGAGAGCTTCGCGCAACGCGCTGGGTGTCGTTTC
GCGTCCTCTCGGGGGCAGCGACGGCGGCAAAAAGTCCGCTCGAAGACTCT
TGCCAAACGCGAGATCGCCTTTTTGGGTCGAATATTAAGATGACCATGTG
TCGGAGCCTTAAACCTCGGCGTCTTCAGATTGAGCGGGGGGTTCACCACC
CGTTGCTGCCTATATCCCTATACCGACCTCCTCTCCATTTTCTCCATTCG
CTGTTTTTCTTGCTGCGAACCATATCTCGCCCAAGCTCCTCGCCAAAAAC
CCGGCTGATCGTCTTTATTAAAAAGACATATGAACCTCATTAGAACCCTC
CGAACATCCACGCCCTTAGCACCGTGAGAGGTAAATATCTCATTACCGCT
TCTATTAATAGTGTAGATGATACAGTGCTTTTTACAGCTCACGGAACCCG
CGCGCCTTGTTCTGTGTCCCGCGCCCCCCTCCTCGCCGCAATGCCTTCAT
TAAACGCTTAAACCGCGCTTTCTTATTCCCTTCCCTCCTTCCCTCTCATT
CCTTTCGGCTGCCTCTGCTGTCTTGTCTCATCGCGCTCTGGACAGGACGT
GCGTGTCATCGCGTGGGGCCTGAGCCTGGAGCGTCCCACCATGATCAAGT
ACGGCATCACCAATATCCGCGAACTGTTCGGCCACAAAGCAGATCTCAAC
CGAACTAAGACCGCTCCCGTCTGCCGGTTCGACTAA
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Coding sequence (CDS) from alignment at H-elongata_contig49774:1699..2584+

>mRNA_H-elongata_contig49774.12191.1 ID=mRNA_H-elongata_contig49774.12191.1|Name=mRNA_H-elongata_contig49774.12191.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=666bp|location=Sequence derived from alignment at H-elongata_contig49774:1699..2584+ (Himanthalia elongata Himel1 dioecious)
ATGGTATCTTATGGTACGCAGATTCGCTTCAAGCCGGCGTATAATCCCTA
CACGGAGCCCTCGATGGAAATCTTCGGGTACCACACCGACCTCAAGAAGT
GGACGGAGATCGGCAACAGCGGCATGTTCCGCCCGGAGATGCTCCTGCCG
ATGGGTCTACCGAAGGCGAGAGCTTCGCGCAACGCGCTGGGTATGGTATC
TTATGGTACGCAGATTCGCTTCAAGCCGGCGTATAATCCCTACACGGAGC
CCTCGATGGAAATCTTCGGGTACCACACCGACCTCAAGAAGTGGACGGAG
ATCGGCAACAGCGGCATGTTCCGCCCGGAGATGCTCCTGCCGATGGGTCT
ACCGAAGGCGAGAGCTTCGCGCAACGCGCTGGGTGACGTGCGTGTCATCG
CGTGGGGCCTGAGCCTGGAGCGTCCCACCATGATCAAGTACGGCATCACC
AATATCCGCGAACTGTTCGGCCACAAAGCAGATCTCAACCGAACTAAGAC
CGCTCCCGTCTGCCGGTTCGACTAAGACGTGCGTGTCATCGCGTGGGGCC
TGAGCCTGGAGCGTCCCACCATGATCAAGTACGGCATCACCAATATCCGC
GAACTGTTCGGCCACAAAGCAGATCTCAACCGAACTAAGACCGCTCCCGT
CTGCCGGTTCGACTAA
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